Os02g0810500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RabGAP/TBC domain containing protein.
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Os02g0810500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RabGAP/TBC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 151.97 | 0.579 | 5.17 | -0.712 | 0.255 | 1.14 | -0.917 | -1.3 | -0.185 | 5.36 | 9.627 | 1401 | -- | -- |
| 153.1 | 0.576 | 5.14 | -0.493 | 0.244 | 1.05 | -0.981 | -- | -0.119 | 5.54 | 11.47 | 2778 | -- | -- |
| 154 | 0.578 | 5.17 | -0.748 | 0.244 | 1.14 | -- | -1.47 | -0.189 | 5.25 | 13.68 | 1369 | -- | -- |
| 154.55 | 0.579 | 5.15 | -0.615 | 0.274 | 1.14 | -- | -- | -0.125 | 5.31 | 10.75 | 5354 | -- | -- |
| 156.97 | 0.584 | 5.18 | -0.744 | -- | 1.18 | -- | -1.47 | -0.185 | -- | 13.83 | 1326 | -- | -- |
| 175.13 | 0.62 | 5.09 | -0.0724 | 0.312 | -- | -0.95 | -- | 0.0971 | 5.05 | -- | -- | -- | -- |
| 177.36 | 0.624 | 5.09 | -0.0718 | 0.306 | -- | -- | -- | 0.101 | 4.62 | -- | -- | -- | -- |
| 158.18 | 0.586 | 5.15 | -0.63 | -- | 1.2 | -- | -- | -0.139 | -- | 9.313 | 5490 | -- | -- |
| 160.32 | 0.59 | 5.12 | -- | 0.327 | 0.951 | -- | -- | -0.0402 | 4.93 | 14.68 | 1725 | -- | -- |
| 182.33 | 0.631 | 5.09 | -0.0601 | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
| 177.49 | 0.623 | 5.09 | -- | 0.305 | -- | -- | -- | 0.109 | 4.62 | -- | -- | -- | -- |
| 163 | 0.595 | 5.12 | -- | -- | 0.992 | -- | -- | -0.0308 | -- | 12.77 | 1334 | -- | -- |
| 182.43 | 0.63 | 5.09 | -- | -- | -- | -- | -- | 0.116 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 148.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 3 | 148.14 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 143 | 149.98 | temperature | 10 | 1440 | > th | dose dependent | sin | 22 | NA |
| 226 | 150.37 | radiation | 40 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 255 | 150.42 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 270 | 150.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 5 |
| 412 | 151.01 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 433 | 151.07 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 441 | 151.09 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 533 | 151.39 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 11 |
| 571 | 151.47 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 13 |
| 608 | 151.56 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 18 |
| 612 | 151.57 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 22 |
| 618 | 151.60 | temperature | 25 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 632 | 151.63 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 633 | 151.63 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 19 |
| 639 | 151.64 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 21 |
| 653 | 151.65 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 22 |
| 659 | 151.68 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 11 |
| 726 | 151.77 | temperature | 30 | 1440 | < th | dose dependent | sin | 22 | NA |
| 773 | 151.83 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 21 |
| 777 | 151.83 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 16 |
| 795 | 151.86 | temperature | 25 | 4320 | > th | dose independent | rect. | 14 | 4 |
| 818 | 151.89 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 16 |
| 820 | 151.89 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 826 | 151.89 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 21 |
| 875 | 151.96 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 22 |
| 915 | 152.00 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 940 | 152.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 955 | 152.04 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 16 |