BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0810500 Os02g0810500|AK071602
(427 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0810500 RabGAP/TBC domain containing protein 894 0.0
Os07g0525400 RabGAP/TBC domain containing protein 470 e-132
Os11g0587500 RabGAP/TBC domain containing protein 289 2e-78
Os02g0709800 RabGAP/TBC domain containing protein 154 1e-37
Os09g0528800 RabGAP/TBC domain containing protein 131 1e-30
Os08g0547200 RabGAP/TBC domain containing protein 130 3e-30
Os10g0518100 RabGAP/TBC domain containing protein 128 7e-30
Os01g0908100 RabGAP/TBC domain containing protein 82 6e-16
Os04g0377600 Similar to TBC1 domain family member 13 80 4e-15
Os11g0479300 RabGAP/TBC domain containing protein 78 1e-14
Os01g0100100 RabGAP/TBC domain containing protein 69 5e-12
>Os02g0810500 RabGAP/TBC domain containing protein
Length = 427
Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/427 (100%), Positives = 427/427 (100%)
Query: 1 MNRMMFMACCYNDPDMLIDPDTVYPIRPECREDAAKTRFKPRPGLTLSPRRWKLLHNEEG 60
MNRMMFMACCYNDPDMLIDPDTVYPIRPECREDAAKTRFKPRPGLTLSPRRWKLLHNEEG
Sbjct: 1 MNRMMFMACCYNDPDMLIDPDTVYPIRPECREDAAKTRFKPRPGLTLSPRRWKLLHNEEG 60
Query: 61 VLDIAGMIKRVQRGGTHPNIKGEVWEFLLGCYDPKSNTEQKSQLRQQRRLEYEKLKTKCR 120
VLDIAGMIKRVQRGGTHPNIKGEVWEFLLGCYDPKSNTEQKSQLRQQRRLEYEKLKTKCR
Sbjct: 61 VLDIAGMIKRVQRGGTHPNIKGEVWEFLLGCYDPKSNTEQKSQLRQQRRLEYEKLKTKCR 120
Query: 121 EMDTAVGSGRVITMPVITEDGQPIQDPNSVDAEQQASDTPLPKEVIQWKLTLHQIGLDVN 180
EMDTAVGSGRVITMPVITEDGQPIQDPNSVDAEQQASDTPLPKEVIQWKLTLHQIGLDVN
Sbjct: 121 EMDTAVGSGRVITMPVITEDGQPIQDPNSVDAEQQASDTPLPKEVIQWKLTLHQIGLDVN 180
Query: 181 RTDRQLVYYESQENLARLWDILAVYSWVDKDIGYCQGMSDLCSPMSILLEHEADAFWCFE 240
RTDRQLVYYESQENLARLWDILAVYSWVDKDIGYCQGMSDLCSPMSILLEHEADAFWCFE
Sbjct: 181 RTDRQLVYYESQENLARLWDILAVYSWVDKDIGYCQGMSDLCSPMSILLEHEADAFWCFE 240
Query: 241 RLMRRVRGNFVSSSTSIGVRSQLTILSSVMKAVDPKLHEHLENLDGGEYLFAFRMLMVLF 300
RLMRRVRGNFVSSSTSIGVRSQLTILSSVMKAVDPKLHEHLENLDGGEYLFAFRMLMVLF
Sbjct: 241 RLMRRVRGNFVSSSTSIGVRSQLTILSSVMKAVDPKLHEHLENLDGGEYLFAFRMLMVLF 300
Query: 301 RREFSFVDTMYLWELMWSMEYNPGLFSMLESDNSTSQANTKDENALKQCGKFEQKNLQAA 360
RREFSFVDTMYLWELMWSMEYNPGLFSMLESDNSTSQANTKDENALKQCGKFEQKNLQAA
Sbjct: 301 RREFSFVDTMYLWELMWSMEYNPGLFSMLESDNSTSQANTKDENALKQCGKFEQKNLQAA 360
Query: 361 KKEEQIPLSVFIVASVIEARNKQILTDAKGLDDVVKILNDITGSLDAKKACRGALKIHER 420
KKEEQIPLSVFIVASVIEARNKQILTDAKGLDDVVKILNDITGSLDAKKACRGALKIHER
Sbjct: 361 KKEEQIPLSVFIVASVIEARNKQILTDAKGLDDVVKILNDITGSLDAKKACRGALKIHER 420
Query: 421 YLTTVKA 427
YLTTVKA
Sbjct: 421 YLTTVKA 427
>Os07g0525400 RabGAP/TBC domain containing protein
Length = 451
Score = 470 bits (1209), Expect = e-132, Method: Compositional matrix adjust.
Identities = 218/423 (51%), Positives = 310/423 (73%), Gaps = 30/423 (7%)
Query: 21 DTVYPIRPECREDAAKTRFKPRPGLTLSPRRWKLLHNEEGVLDIAGMIKRVQRGGTHPNI 80
D+ Y +R +C +D K++FK + G TLS R+W+ + +G LDIA ++ R+Q+GG HP +
Sbjct: 14 DSYYEVRSDCTDDVPKSKFKIKAGKTLSVRKWQAAFSTDGCLDIASVLSRIQKGGVHPTV 73
Query: 81 KGEVWEFLLGCYDPKSNTEQKSQLRQQRRLEYEKLKTKCREMDTAVGSGRVITMPVITED 140
+GEVWEFLLGC+DP+S +++ ++RQ RRL+Y + K CREMD+ VGSG+VIT P+ITED
Sbjct: 74 RGEVWEFLLGCFDPRSTFDEREEIRQIRRLQYARWKEDCREMDSHVGSGKVITAPLITED 133
Query: 141 GQPIQDP---------------------NSVDAEQQASDTPLPKEVIQWKLTLHQIGLDV 179
G+PI+DP N + ++ AS K +I WKLTLHQIGLDV
Sbjct: 134 GRPIKDPLVLLEATSSENTSDGTSTSSTNGNEIDESASRIT-DKLIIDWKLTLHQIGLDV 192
Query: 180 NRTDRQLVYYESQENLARLWDILAVYSWVDKDIGYCQGMSDLCSPMSILLEHEADAFWCF 239
RTDR +V+YE++ENL++LWDILAVY+W+DKD+GYCQGMSDLCSPM +LL+ EADAFWCF
Sbjct: 193 LRTDRTMVFYENKENLSKLWDILAVYAWIDKDVGYCQGMSDLCSPMIVLLKDEADAFWCF 252
Query: 240 ERLMRRVRGNFVSSSTSIGVRSQLTILSSVMKAVDPKLHEHLENLDGGEYLFAFRMLMVL 299
E+LMRR+RGNF + S+GV +QL L+S+++ +DPKLH+HLE L GG+YLFAFRM MVL
Sbjct: 253 EKLMRRLRGNFKCTDQSVGVANQLQYLASIIQVLDPKLHDHLEILGGGDYLFAFRMFMVL 312
Query: 300 FRREFSFVDTMYLWELMWSMEYNPGLFSMLESDNST--SQANTKDENALKQCGKFEQ-KN 356
FRRE SF D++YLWE+MW++EY+P +F D S S+ + ++ GK+++ K+
Sbjct: 313 FRREVSFGDSLYLWEMMWALEYDPDIFFAACEDASAHKSKVSKSKLRGVRHFGKWDKDKD 372
Query: 357 LQAAKKEEQ-----IPLSVFIVASVIEARNKQILTDAKGLDDVVKILNDITGSLDAKKAC 411
+ +K + +P+SVF+VASV++ + +++L +A+GLDD+++ILND+ G+LDAKKAC
Sbjct: 373 KENSKNGSEDTDGPVPISVFMVASVLKEKREKLLQEARGLDDLIRILNDVNGNLDAKKAC 432
Query: 412 RGA 414
GA
Sbjct: 433 AGA 435
>Os11g0587500 RabGAP/TBC domain containing protein
Length = 279
Score = 289 bits (740), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 132/249 (53%), Positives = 178/249 (71%), Gaps = 26/249 (10%)
Query: 21 DTVYPIRPECREDAAKTRFKPRPGLTLSPRRWKLLHNEEGVLDIAGMIKRVQRGGTHPNI 80
D Y IR +C +T+FK + G TLS R+W EG LDIA ++ R+Q+GG HP I
Sbjct: 12 DGFYQIRSDCTHKVPETKFKIKVGKTLSVRKWHAAFTREGRLDIASVLNRIQKGGVHPTI 71
Query: 81 KGEVWEFLLGCYDPKSNTEQKSQLRQQRRLEYEKLKTKCREMDTAVGSGRVITMPVITED 140
+GEVWEFLLGC+DP S +++ Q+R++RR++Y K +C++MD+ VGSG++IT P+ITED
Sbjct: 72 RGEVWEFLLGCFDPGSTFDEREQIREKRRIQYAIWKQECKDMDSHVGSGKIITAPIITED 131
Query: 141 GQPIQDP-----------------------NSVDAEQQASDTPLPKEVIQWKLTLHQIGL 177
G+PI+DP N VD ++ + + K++I+WKL LHQIGL
Sbjct: 132 GKPIKDPLVLLEATSDQHTMQGSSSSSRNENEVD---KSENCVVDKQIIEWKLLLHQIGL 188
Query: 178 DVNRTDRQLVYYESQENLARLWDILAVYSWVDKDIGYCQGMSDLCSPMSILLEHEADAFW 237
DV RTDR +V+YE++ENL++LWDILAVY+W+DK+IGYCQGMSDLCSPM +LL EADAFW
Sbjct: 189 DVLRTDRSMVFYENKENLSKLWDILAVYAWIDKEIGYCQGMSDLCSPMIVLLNDEADAFW 248
Query: 238 CFERLMRRV 246
CFERLMRR+
Sbjct: 249 CFERLMRRL 257
>Os02g0709800 RabGAP/TBC domain containing protein
Length = 679
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/311 (31%), Positives = 156/311 (50%), Gaps = 43/311 (13%)
Query: 11 YNDPDMLIDPDTVYPIRPECREDAAKTRFKPRPGLTLSPRRWKLLHNEEG-VLDIAGMIK 69
Y D + D D++ E + A + + +P LS W+ + EG V+D + K
Sbjct: 317 YKDQQITPDKDSLLSDSMESNKILAWGKPREQP---LSVDEWRSFLDPEGRVMDSKALRK 373
Query: 70 RVQRGGTHPNIKGEVWEFLLGCYDPKSNTEQKSQLRQQRRLEYEKLKTKCREMDTAVGSG 129
+V GG ++ EVW+FLLG ++ S ++ L +R EYE +K++ + + +
Sbjct: 374 KVFYGGIDHVLRKEVWKFLLGYHEYDSTYAEREYLAVMKRTEYEAIKSQWKSISST---- 429
Query: 130 RVITMPVITEDGQPIQDPNSVDAEQQASDTPLPKEVIQWKLTLHQIGLDVNRTDRQLVYY 189
QA K +++ I DV RTDR + YY
Sbjct: 430 -------------------------QA------KRFTKFRERKGLIDKDVVRTDRSVPYY 458
Query: 190 ES--QENLARLWDILAVYSWVDKDIGYCQGMSDLCSPMSILLEHEADAFWCFERLMRRVR 247
E +N+ L DIL YS+ + D+GYCQGMSD +P+ ++E E+++FWCF LM R+
Sbjct: 459 EGDDNQNVLVLRDILLTYSFYNFDLGYCQGMSDFLAPILYVMEDESESFWCFAILMERLG 518
Query: 248 GNFVSSSTSIGVRSQLTILSSVMKAVDPKLHEHLENLDGGEYLFAFRMLMVLFRREFSFV 307
NF G+ +QL LS +++ +DP+LH + D Y F FR +++ F+REFSF
Sbjct: 519 ANFNRDQN--GMHAQLLALSKLVELLDPQLHNYFRKNDCLNYFFCFRWVLIQFKREFSFD 576
Query: 308 DTMYLWELMWS 318
M LWE++W+
Sbjct: 577 QIMLLWEVLWT 587
>Os09g0528800 RabGAP/TBC domain containing protein
Length = 579
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 125/233 (53%), Gaps = 31/233 (13%)
Query: 175 IGL-DVNRTDRQLVYYESQENLARLWDILAVYSWVDKDIGYCQGMSDLCSPMSILLEHEA 233
+GL D + D ++Y+ ARL +L Y+ D +IGYCQGMSDL SP+ ++E +
Sbjct: 358 VGLRDYDHLDPSMIYHA-----ARLVGLLEAYAVYDPEIGYCQGMSDLLSPIIAVMEEDD 412
Query: 234 DAFWCFERLMRRVRGNFVSSSTSIGVRSQLTILSSVMKAVDPKLHEHLENLDGGEYLFAF 293
+AFWCF MR+ R NF +G+R QL I+S ++K D L++HL+ L + F +
Sbjct: 413 EAFWCFVGFMRKARHNF--RLDEVGIRRQLKIVSQIIKRKDSHLYKHLQKLQAEDCFFVY 470
Query: 294 RMLMVLFRREFSFVDTMYLWELMWSMEYNPGLFSMLESDNSTSQANTKDENALKQCGKFE 353
RM++VLFRRE +F T+ LWE+MW +D + +A +
Sbjct: 471 RMVVVLFRRELTFEQTVCLWEVMW-------------ADQAAIRAGIGRST-------WA 510
Query: 354 QKNLQAAKKEEQIPLSVFIVASVIEARNKQILTDAKGLDDVVKILNDITGSLD 406
+ L+A ++ L ++ +A+ + R K I+ +D++++ N + G LD
Sbjct: 511 KIRLRAPPTDD---LLLYAIAACVLQRRKLIIEKYSSMDEILRECNSMAGQLD 560
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 73/123 (59%), Gaps = 10/123 (8%)
Query: 46 TLSPRRWKLLHNEEGVLDIAG--MIKRVQRGGTHPNIKGEVWEFLLGCYDPKSNTEQKSQ 103
LS ++W+ L + G L G +K+V+ GG P I+ EVW FLLG YD S ++++
Sbjct: 104 VLSRQQWEGLFSANGKLRDRGKKFLKKVRSGGIEPGIRAEVWPFLLGVYDLNSTEDERNT 163
Query: 104 LRQQRRLEYEKLKTKCRE-MDTAVGSGRVITMPVITEDGQPIQDPNSVDAEQQASDTPLP 162
++ ++R EYEKL+ +C++ ++ G+G + VI E+ ++ + ++ + S++P
Sbjct: 164 IKIKKRKEYEKLRRQCQQILNCYKGNG----LKVINENN---EECSGIEFSAEGSESPCF 216
Query: 163 KEV 165
++V
Sbjct: 217 EDV 219
>Os08g0547200 RabGAP/TBC domain containing protein
Length = 565
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 31/233 (13%)
Query: 175 IGL-DVNRTDRQLVYYESQENLARLWDILAVYSWVDKDIGYCQGMSDLCSPMSILLEHEA 233
+GL D + + ++Y+ ARL +L Y+ D +IGYCQGMSDL SP+ +++E +
Sbjct: 344 VGLKDYDHLEPYMIYHA-----ARLVAVLEAYALFDPEIGYCQGMSDLLSPIIVVMEEDH 398
Query: 234 DAFWCFERLMRRVRGNFVSSSTSIGVRSQLTILSSVMKAVDPKLHEHLENLDGGEYLFAF 293
+AFWCF MR+ R NF +G+R QL I+S ++K D L+ HL+ L + F +
Sbjct: 399 EAFWCFVGFMRKARHNF--RLDEVGIRRQLKIVSQIIKRKDSHLYRHLQKLQAEDCFFVY 456
Query: 294 RMLMVLFRREFSFVDTMYLWELMWSMEYNPGLFSMLESDNSTSQANTKDENALKQCGKFE 353
RM++VLFRRE +F T+ LWE+MW +D + +A +
Sbjct: 457 RMVVVLFRRELTFEQTLCLWEVMW-------------ADQAAIRAGIGRST-------WS 496
Query: 354 QKNLQAAKKEEQIPLSVFIVASVIEARNKQILTDAKGLDDVVKILNDITGSLD 406
+ L A ++ L ++ +A+ + + K I+ +D++++ N + G LD
Sbjct: 497 KIRLHAPPTDD---LLLYAIAACVLQKRKLIIERYSSMDEILRECNSMAGQLD 546
>Os10g0518100 RabGAP/TBC domain containing protein
Length = 586
Score = 128 bits (322), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 25/213 (11%)
Query: 194 NLARLWDILAVYSWVDKDIGYCQGMSDLCSPMSILLEHEADAFWCFERLMRRVRGNFVSS 253
+ ARL IL Y+ D +IGYCQGMSDL +P+ +LE + +AFWCF MR+ R NF
Sbjct: 379 HAARLVPILEAYAIYDPEIGYCQGMSDLLAPLLAVLEDDNEAFWCFAGFMRKARHNF--R 436
Query: 254 STSIGVRSQLTILSSVMKAVDPKLHEHLENLDGGEYLFAFRMLMVLFRREFSFVDTMYLW 313
+G+R QL +++ ++K D L+ HLE L + F +RM++V+FRRE +F T+ LW
Sbjct: 437 LDEVGIRRQLNMVARIIKYKDFHLYRHLEMLQAEDCFFVYRMVVVMFRRELTFEQTLCLW 496
Query: 314 ELMWSMEYNPGLFSMLESDNSTSQANTKDENALKQCGKFEQKNLQAAKKEEQIPLSVFIV 373
E+MW+ QA + A GK L A ++ L ++ +
Sbjct: 497 EVMWA-----------------DQAANRAGIAKSSLGKL---RLGAPPTDD---LLLYAI 533
Query: 374 ASVIEARNKQILTDAKGLDDVVKILNDITGSLD 406
A+ + + K I+ +D++++ N + G LD
Sbjct: 534 AASVLQKRKLIIESYSSMDEIIRECNSMAGQLD 566
>Os01g0908100 RabGAP/TBC domain containing protein
Length = 368
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 127/270 (47%), Gaps = 40/270 (14%)
Query: 80 IKGEVWEFLLGCYDPKSNTEQKSQLRQQRRLEYEKLKTKCREMDTAVGSGRVITMPVITE 139
++ VW+ LLG Y P + +L ++R +Y K + + R +
Sbjct: 53 VRPTVWKLLLG-YLPSDRALWEQELAKKRS-QYAAFKEEFLSNPMEIARQREL------- 103
Query: 140 DGQPIQDPNSV------DAEQQASDTPLP-------KEVIQWKLTLHQIGLDVNRTDRQL 186
+GQ ++ S+ +E + PL + ++ + QI DV RT +
Sbjct: 104 EGQGSENAGSIYNGLLHRSEVTQEEHPLSLGKTTAWNQFFEYSEIIEQIDRDVKRTHPDM 163
Query: 187 VYYESQENLAR-----LWDILAVYSWVDKDIGYCQGMSDLCSPMSILLEH---------- 231
++ + A+ L +IL +++ ++ I Y QGM+++ +P+ + +
Sbjct: 164 HFFCGDSSFAKSNQESLKNILIIFAKLNAGIRYVQGMNEILAPLFFVFRNDPDDKNANFA 223
Query: 232 EADAFWCFERLMRRVRGNFVSS--STSIGVRSQLTILSSVMKAVDPKLHEHLE-NLDGGE 288
EAD+F+CF L+ R NF ++++G++ L+ LS ++ D +L +LE +
Sbjct: 224 EADSFFCFMELLSGFRDNFCQKLDNSAVGIQGTLSKLSQLVAKYDGELQRYLEITTEINP 283
Query: 289 YLFAFRMLMVLFRREFSFVDTMYLWELMWS 318
+AFR + +L +EF+F DT+++W+ + S
Sbjct: 284 QFYAFRWITLLLTQEFNFADTIHIWDTLLS 313
>Os04g0377600 Similar to TBC1 domain family member 13
Length = 316
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 90/167 (53%), Gaps = 24/167 (14%)
Query: 171 TLHQIGLDVNRTDRQLVYYE--------SQENLARLWDILAVYSWVDKDIGYCQGMSDLC 222
T+ QI DV RT ++ ++ +QE+L R IL +++ ++ I Y QGM+++
Sbjct: 91 TIEQIDRDVKRTHPEMQFFNGDSSDALSNQESLKR---ILTIFAKLNPGIRYVQGMNEVL 147
Query: 223 SPMSILLEH----------EADAFWCFERLMRRVRGNFVSS--STSIGVRSQLTILSSVM 270
+P+ + ++ E DAF+CF L+ R NF ++ +G+RS ++ LS ++
Sbjct: 148 APLYYVFKNDPEENNAESAEPDAFFCFVELLSGFRDNFCKQLDNSVVGIRSTISKLSQLL 207
Query: 271 KAVDPKLHEHLENLDG-GEYLFAFRMLMVLFRREFSFVDTMYLWELM 316
K D +L HLE + +AFR + +L +EF F D +++W+ +
Sbjct: 208 KRHDEELWRHLEVVTKVNPQFYAFRWITLLLTQEFKFRDCIHIWDAL 254
>Os11g0479300 RabGAP/TBC domain containing protein
Length = 338
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 86/157 (54%), Gaps = 15/157 (9%)
Query: 172 LHQIGLDVNRTDRQLVYYESQENLARLWDILAVYSWVDKDIGYCQGMSDLCSPMSILLEH 231
L QI DV RT ++ ++ ++ N L +L ++S ++ I Y QGM+++ +P+ + ++
Sbjct: 119 LEQIDRDVKRTHPEMPFFSAKANQESLRRVLIIFSKLNPTIRYVQGMNEVLAPLFYVFKN 178
Query: 232 ----------EADAFWCFERLMRRVRGNFVSS--STSIGVRSQLTILSSVMKAVDPKLHE 279
EAD F+CF L+ + N+ ++ +G+RS L+ LS ++K D +L
Sbjct: 179 DPDTSNSASAEADTFFCFVELLSGFKDNYCKHLDNSQVGIRSTLSKLSQLLKRHDEELWR 238
Query: 280 HLENLDGGEY--LFAFRMLMVLFRREFSFVDTMYLWE 314
H+E + Y +AFR + +L EFSF +++W+
Sbjct: 239 HME-ITTKVYPQYYAFRWITLLLTMEFSFNVCIHIWD 274
>Os01g0100100 RabGAP/TBC domain containing protein
Length = 410
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 47 LSPRRWKLLHNEEG-VLDIAGMIKRVQRGGTHPNIKGEVWEFLLGCYDPKSNTEQKSQLR 105
L P +W + +G V+ +K + GG P I+ EVWEFLLGCY S +E + +LR
Sbjct: 61 LKPEKWHTCFDNDGKVIGFRKALKFIVLGGVDPTIRAEVWEFLLGCYALSSTSEYRRKLR 120
Query: 106 QQRRLEYEKLKTKCREMDTAVGSGRV 131
RR +Y+ L +C+ M ++G+G +
Sbjct: 121 AVRREKYQILVRQCQSMHPSIGTGEL 146
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,381,696
Number of extensions: 604982
Number of successful extensions: 1427
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 1411
Number of HSP's successfully gapped: 13
Length of query: 427
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 323
Effective length of database: 11,605,545
Effective search space: 3748591035
Effective search space used: 3748591035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)