Os11g0587500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RabGAP/TBC domain containing protein.
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Os11g0587500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RabGAP/TBC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.03 | 0.336 | 8.46 | -1.31 | 0.66 | 0.431 | -0.208 | -1.25 | -0.122 | 2.39 | 20.1 | 2119 | -- | -- |
| 52.52 | 0.338 | 8.43 | -1.25 | 0.65 | 0.777 | -0.265 | -- | -0.126 | 2.3 | 19 | 5093 | -- | -- |
| 51.17 | 0.333 | 8.46 | -1.32 | 0.656 | 0.432 | -- | -1.28 | -0.124 | 2.39 | 20.19 | 2160 | -- | -- |
| 52.83 | 0.339 | 8.43 | -1.31 | 0.66 | 0.806 | -- | -- | -0.121 | 2.47 | 18.97 | 5107 | -- | -- |
| 75.18 | 0.404 | 8.47 | -1.33 | -- | 0.551 | -- | -1.2 | -0.145 | -- | 20.1 | 2426 | -- | -- |
| 61.59 | 0.368 | 8.39 | -0.81 | 0.681 | -- | -0.319 | -- | 0.0683 | 2.29 | -- | -- | -- | -- |
| 61.97 | 0.369 | 8.39 | -0.801 | 0.68 | -- | -- | -- | 0.0701 | 2.29 | -- | -- | -- | -- |
| 77.18 | 0.409 | 8.42 | -1.22 | -- | 0.926 | -- | -- | -0.102 | -- | 18.44 | 2370 | -- | -- |
| 75.74 | 0.405 | 8.33 | -- | 0.682 | -0.374 | -- | -- | 0.22 | 2.19 | 21.1 | 14529 | -- | -- |
| 89.45 | 0.442 | 8.39 | -0.772 | -- | -- | -- | -- | 0.0867 | -- | -- | -- | -- | -- |
| 78.87 | 0.415 | 8.37 | -- | 0.665 | -- | -- | -- | 0.159 | 2.27 | -- | -- | -- | -- |
| 96.69 | 0.458 | 8.33 | -- | -- | -0.427 | -- | -- | 0.321 | -- | 22.09 | 47520 | -- | -- |
| 105.18 | 0.479 | 8.37 | -- | -- | -- | -- | -- | 0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.59 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 3 | 49.87 | humidity | 90 | 14400 | > th | dose dependent | sin | 17 | NA |
| 4 | 49.88 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 12 |
| 5 | 49.90 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 20 | 50.02 | humidity | 90 | 14400 | > th | dose independent | rect. | 15 | 9 |
| 35 | 50.11 | humidity | 80 | 14400 | > th | dose dependent | rect. | 10 | 5 |
| 38 | 50.12 | humidity | 80 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 42 | 50.12 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 20 |
| 57 | 50.20 | humidity | 80 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 65 | 50.23 | humidity | 80 | 14400 | > th | dose independent | rect. | 11 | 4 |
| 82 | 50.27 | humidity | 90 | 14400 | > th | dose independent | sin | 17 | NA |
| 95 | 50.29 | humidity | 80 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 102 | 50.31 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 17 |
| 111 | 50.33 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 21 |
| 132 | 50.38 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 137 | 50.39 | humidity | 80 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 156 | 50.41 | humidity | 80 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 168 | 50.44 | humidity | 90 | 14400 | > th | dose independent | rect. | 11 | 17 |
| 175 | 50.45 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 192 | 50.48 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 198 | 50.48 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 21 |
| 203 | 50.50 | temperature | 25 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 222 | 50.52 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 228 | 50.52 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 22 |
| 276 | 50.59 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 279 | 50.59 | temperature | 25 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 298 | 50.61 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 325 | 50.64 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 357 | 50.68 | temperature | 25 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 379 | 50.70 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 390 | 50.71 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 16 |
| 406 | 50.74 | temperature | 20 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 432 | 50.76 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 447 | 50.78 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 448 | 50.78 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 6 |
| 451 | 50.78 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 466 | 50.79 | humidity | 90 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 472 | 50.80 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 479 | 50.80 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 23 |
| 483 | 50.81 | humidity | 90 | 14400 | < th | dose independent | rect. | 12 | 11 |
| 501 | 50.82 | humidity | 90 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 523 | 50.83 | humidity | 90 | 14400 | > th | dose dependent | rect. | 10 | 23 |
| 525 | 50.83 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 23 |
| 529 | 50.84 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 16 |
| 555 | 50.86 | temperature | 20 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 568 | 50.87 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 585 | 50.87 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 586 | 50.88 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 602 | 50.89 | humidity | 90 | 14400 | < th | dose independent | sin | 19 | NA |
| 689 | 50.94 | temperature | 30 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 725 | 50.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 5 |
| 734 | 50.97 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 19 |
| 777 | 50.99 | wind | 9 | 14400 | > th | dose independent | rect. | 4 | 7 |
| 864 | 51.04 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 17 |
| 891 | 51.05 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 14 |
| 892 | 51.05 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 917 | 51.07 | wind | 9 | 14400 | > th | dose independent | rect. | 23 | 12 |
| 948 | 51.09 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |