BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0587500 Os11g0587500|AK065976
(279 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0587500 RabGAP/TBC domain containing protein 545 e-155
Os07g0525400 RabGAP/TBC domain containing protein 389 e-108
Os02g0810500 RabGAP/TBC domain containing protein 273 7e-74
Os02g0709800 RabGAP/TBC domain containing protein 80 2e-15
Os01g0100100 RabGAP/TBC domain containing protein 68 7e-12
Os10g0518100 RabGAP/TBC domain containing protein 68 7e-12
Os08g0547200 RabGAP/TBC domain containing protein 67 1e-11
Os09g0528800 RabGAP/TBC domain containing protein 65 4e-11
>Os11g0587500 RabGAP/TBC domain containing protein
Length = 279
Score = 545 bits (1403), Expect = e-155, Method: Compositional matrix adjust.
Identities = 267/279 (95%), Positives = 267/279 (95%)
Query: 1 MLRRAGKGEVADGFYQIRSDCTHKVPETKFKIKVGKTLSVRKWHAAFTREGRLDIASVLN 60
MLRRAGKGEVADGFYQIRSDCTHKVPETKFKIKVGKTLSVRKWHAAFTREGRLDIASVLN
Sbjct: 1 MLRRAGKGEVADGFYQIRSDCTHKVPETKFKIKVGKTLSVRKWHAAFTREGRLDIASVLN 60
Query: 61 RIQKGGVHPTIRGEVWEFLLGCFDPGSTFDXXXXXXXXXXXXYAIWKQECKDMDSHVGSG 120
RIQKGGVHPTIRGEVWEFLLGCFDPGSTFD YAIWKQECKDMDSHVGSG
Sbjct: 61 RIQKGGVHPTIRGEVWEFLLGCFDPGSTFDEREQIREKRRIQYAIWKQECKDMDSHVGSG 120
Query: 121 KIITAPIITEDGKPIKDPLVLLEATSDQHTMQGSSSSSRNENEVDKSENCVVDKQIIEWK 180
KIITAPIITEDGKPIKDPLVLLEATSDQHTMQGSSSSSRNENEVDKSENCVVDKQIIEWK
Sbjct: 121 KIITAPIITEDGKPIKDPLVLLEATSDQHTMQGSSSSSRNENEVDKSENCVVDKQIIEWK 180
Query: 181 LLLHQIGLDVLRTDRSMVFYENKENLSKLWDILAVYAWIDKEIGYCQGMSDLCSPMIVLL 240
LLLHQIGLDVLRTDRSMVFYENKENLSKLWDILAVYAWIDKEIGYCQGMSDLCSPMIVLL
Sbjct: 181 LLLHQIGLDVLRTDRSMVFYENKENLSKLWDILAVYAWIDKEIGYCQGMSDLCSPMIVLL 240
Query: 241 NDEADAFWCFERLMRRLMHTAICWGGEPASAPCVYHSSA 279
NDEADAFWCFERLMRRLMHTAICWGGEPASAPCVYHSSA
Sbjct: 241 NDEADAFWCFERLMRRLMHTAICWGGEPASAPCVYHSSA 279
>Os07g0525400 RabGAP/TBC domain containing protein
Length = 451
Score = 389 bits (1000), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/256 (73%), Positives = 217/256 (84%)
Query: 8 GEVADGFYQIRSDCTHKVPETKFKIKVGKTLSVRKWHAAFTREGRLDIASVLNRIQKGGV 67
G AD +Y++RSDCT VP++KFKIK GKTLSVRKW AAF+ +G LDIASVL+RIQKGGV
Sbjct: 10 GTPADSYYEVRSDCTDDVPKSKFKIKAGKTLSVRKWQAAFSTDGCLDIASVLSRIQKGGV 69
Query: 68 HPTIRGEVWEFLLGCFDPGSTFDXXXXXXXXXXXXYAIWKQECKDMDSHVGSGKIITAPI 127
HPT+RGEVWEFLLGCFDP STFD YA WK++C++MDSHVGSGK+ITAP+
Sbjct: 70 HPTVRGEVWEFLLGCFDPRSTFDEREEIRQIRRLQYARWKEDCREMDSHVGSGKVITAPL 129
Query: 128 ITEDGKPIKDPLVLLEATSDQHTMQGSSSSSRNENEVDKSENCVVDKQIIEWKLLLHQIG 187
ITEDG+PIKDPLVLLEATS ++T G+S+SS N NE+D+S + + DK II+WKL LHQIG
Sbjct: 130 ITEDGRPIKDPLVLLEATSSENTSDGTSTSSTNGNEIDESASRITDKLIIDWKLTLHQIG 189
Query: 188 LDVLRTDRSMVFYENKENLSKLWDILAVYAWIDKEIGYCQGMSDLCSPMIVLLNDEADAF 247
LDVLRTDR+MVFYENKENLSKLWDILAVYAWIDK++GYCQGMSDLCSPMIVLL DEADAF
Sbjct: 190 LDVLRTDRTMVFYENKENLSKLWDILAVYAWIDKDVGYCQGMSDLCSPMIVLLKDEADAF 249
Query: 248 WCFERLMRRLMHTAIC 263
WCFE+LMRRL C
Sbjct: 250 WCFEKLMRRLRGNFKC 265
>Os02g0810500 RabGAP/TBC domain containing protein
Length = 427
Score = 273 bits (699), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 128/249 (51%), Positives = 167/249 (67%), Gaps = 26/249 (10%)
Query: 12 DGFYQIRSDCTHKVPETKFKIKVGKTLSVRKWHAAFTREGRLDIASVLNRIQKGGVHPTI 71
D Y IR +C +T+FK + G TLS R+W EG LDIA ++ R+Q+GG HP I
Sbjct: 21 DTVYPIRPECREDAAKTRFKPRPGLTLSPRRWKLLHNEEGVLDIAGMIKRVQRGGTHPNI 80
Query: 72 RGEVWEFLLGCFDPGSTFDXXXXXXXXXXXXYAIWKQECKDMDSHVGSGKIITAPIITED 131
+GEVWEFLLGC+DP S + Y K +C++MD+ VGSG++IT P+ITED
Sbjct: 81 KGEVWEFLLGCYDPKSNTEQKSQLRQQRRLEYEKLKTKCREMDTAVGSGRVITMPVITED 140
Query: 132 GKPIKDPLVLLEATSDQHTMQGSSSSSRNENEVD---KSENCVVDKQIIEWKLLLHQIGL 188
G+PI+DP N VD ++ + + K++I+WKL LHQIGL
Sbjct: 141 GQPIQDP-----------------------NSVDAEQQASDTPLPKEVIQWKLTLHQIGL 177
Query: 189 DVLRTDRSMVFYENKENLSKLWDILAVYAWIDKEIGYCQGMSDLCSPMIVLLNDEADAFW 248
DV RTDR +V+YE++ENL++LWDILAVY+W+DK+IGYCQGMSDLCSPM +LL EADAFW
Sbjct: 178 DVNRTDRQLVYYESQENLARLWDILAVYSWVDKDIGYCQGMSDLCSPMSILLEHEADAFW 237
Query: 249 CFERLMRRL 257
CFERLMRR+
Sbjct: 238 CFERLMRRV 246
>Os02g0709800 RabGAP/TBC domain containing protein
Length = 679
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 6/105 (5%)
Query: 159 RNENEVDKSE-NCVVDKQIIEWKLLLHQIGL---DVLRTDRSMVFYE--NKENLSKLWDI 212
R E E KS+ + Q + + GL DV+RTDRS+ +YE + +N+ L DI
Sbjct: 413 RTEYEAIKSQWKSISSTQAKRFTKFRERKGLIDKDVVRTDRSVPYYEGDDNQNVLVLRDI 472
Query: 213 LAVYAWIDKEIGYCQGMSDLCSPMIVLLNDEADAFWCFERLMRRL 257
L Y++ + ++GYCQGMSD +P++ ++ DE+++FWCF LM RL
Sbjct: 473 LLTYSFYNFDLGYCQGMSDFLAPILYVMEDESESFWCFAILMERL 517
>Os01g0100100 RabGAP/TBC domain containing protein
Length = 410
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 3/129 (2%)
Query: 32 IKVGKTLSVRKWHAAFTREGR-LDIASVLNRIQKGGVHPTIRGEVWEFLLGCFDPGSTFD 90
+K K L KWH F +G+ + L I GGV PTIR EVWEFLLGC+ ST +
Sbjct: 55 VKGSKMLKPEKWHTCFDNDGKVIGFRKALKFIVLGGVDPTIRAEVWEFLLGCYALSSTSE 114
Query: 91 XXXXXXXXXXXXYAIWKQECKDMDSHVGSGKIITA--PIITEDGKPIKDPLVLLEATSDQ 148
Y I ++C+ M +G+G++ A + + K+ + E ++ Q
Sbjct: 115 YRRKLRAVRREKYQILVRQCQSMHPSIGTGELAYAVGSKLMDVRTMSKETHIAEEVSTSQ 174
Query: 149 HTMQGSSSS 157
T Q ++ S
Sbjct: 175 QTSQNTAGS 183
>Os10g0518100 RabGAP/TBC domain containing protein
Length = 586
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%)
Query: 207 SKLWDILAVYAWIDKEIGYCQGMSDLCSPMIVLLNDEADAFWCFERLMRRLMHT 260
++L IL YA D EIGYCQGMSDL +P++ +L D+ +AFWCF MR+ H
Sbjct: 381 ARLVPILEAYAIYDPEIGYCQGMSDLLAPLLAVLEDDNEAFWCFAGFMRKARHN 434
>Os08g0547200 RabGAP/TBC domain containing protein
Length = 565
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 38/54 (70%)
Query: 207 SKLWDILAVYAWIDKEIGYCQGMSDLCSPMIVLLNDEADAFWCFERLMRRLMHT 260
++L +L YA D EIGYCQGMSDL SP+IV++ ++ +AFWCF MR+ H
Sbjct: 361 ARLVAVLEAYALFDPEIGYCQGMSDLLSPIIVVMEEDHEAFWCFVGFMRKARHN 414
>Os09g0528800 RabGAP/TBC domain containing protein
Length = 579
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 6/76 (7%)
Query: 186 IGL-DVLRTDRSMVFYENKENLSKLWDILAVYAWIDKEIGYCQGMSDLCSPMIVLLNDEA 244
+GL D D SM+++ ++L +L YA D EIGYCQGMSDL SP+I ++ ++
Sbjct: 358 VGLRDYDHLDPSMIYHA-----ARLVGLLEAYAVYDPEIGYCQGMSDLLSPIIAVMEEDD 412
Query: 245 DAFWCFERLMRRLMHT 260
+AFWCF MR+ H
Sbjct: 413 EAFWCFVGFMRKARHN 428
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,650,257
Number of extensions: 383493
Number of successful extensions: 934
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 934
Number of HSP's successfully gapped: 8
Length of query: 279
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 179
Effective length of database: 11,814,401
Effective search space: 2114777779
Effective search space used: 2114777779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)