Os01g0100100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RabGAP/TBC domain containing protein.
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Os01g0100100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RabGAP/TBC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.35 | 0.287 | 10.5 | -0.437 | 0.439 | 0.555 | -0.261 | 0.935 | -0.299 | 13.3 | 84.84 | 7136 | -- | -- |
| 38.39 | 0.289 | 10.5 | -0.466 | 0.415 | 0.558 | -0.296 | -- | -0.343 | 13.2 | 94 | 7326 | -- | -- |
| 37.6 | 0.286 | 10.5 | -0.44 | 0.437 | 0.563 | -- | 0.913 | -0.3 | 13.2 | 85 | 7230 | -- | -- |
| 38.75 | 0.29 | 10.5 | -0.476 | 0.417 | 0.566 | -- | -- | -0.34 | 13.1 | 94 | 7317 | -- | -- |
| 47.97 | 0.324 | 10.5 | -0.582 | -- | 0.498 | -- | -0.0503 | -0.205 | -- | 85 | 7466 | -- | -- |
| 43.06 | 0.308 | 10.5 | -0.542 | 0.423 | -- | -0.338 | -- | -0.215 | 13.3 | -- | -- | -- | -- |
| 43.52 | 0.309 | 10.5 | -0.554 | 0.423 | -- | -- | -- | -0.217 | 13.2 | -- | -- | -- | -- |
| 46.91 | 0.32 | 10.5 | -0.563 | -- | 0.539 | -- | -- | -0.229 | -- | 98.41 | 7448 | -- | -- |
| 44.69 | 0.311 | 10.5 | -- | 0.422 | 0.642 | -- | -- | -0.319 | 13.1 | 94 | 7331 | -- | -- |
| 54.58 | 0.345 | 10.5 | -0.57 | -- | -- | -- | -- | -0.226 | -- | -- | -- | -- | -- |
| 51.62 | 0.336 | 10.5 | -- | 0.432 | -- | -- | -- | -0.155 | 13.2 | -- | -- | -- | -- |
| 55.28 | 0.347 | 10.5 | -- | -- | 0.546 | -- | -- | -0.166 | -- | 98.41 | 7448 | -- | -- |
| 63.17 | 0.371 | 10.5 | -- | -- | -- | -- | -- | -0.162 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.89 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 4 |
| 2 | 34.89 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 20 | 35.42 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 21 | 35.46 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 23 | 35.48 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 24 | 35.48 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 4 |
| 25 | 35.48 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 2 |
| 27 | 35.50 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 5 |
| 28 | 35.50 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 29 | 35.50 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 5 |
| 33 | 35.51 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 5 |
| 56 | 35.66 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 57 | 35.66 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 59 | 35.68 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 60 | 35.68 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 67 | 35.72 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 68 | 35.72 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 75 | 35.80 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 77 | 35.80 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 92 | 35.89 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 6 |
| 102 | 35.96 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 11 |
| 103 | 35.96 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 11 |
| 105 | 35.96 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 11 |
| 107 | 35.97 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 108 | 35.97 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 8 |
| 110 | 35.97 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 8 |
| 123 | 36.00 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 16 |
| 125 | 36.00 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 16 |
| 126 | 36.01 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 16 |
| 127 | 36.01 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 147 | 36.08 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 16 |
| 152 | 36.09 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 12 |
| 168 | 36.14 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 2 |
| 179 | 36.16 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 192 | 36.21 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 6 |
| 194 | 36.22 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 4 |
| 219 | 36.26 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 7 |
| 221 | 36.26 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 11 |
| 223 | 36.27 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 258 | 36.35 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 263 | 36.36 | wind | 3.0 | 14400 | < th | dose dependent | sin | 10 | NA |
| 290 | 36.41 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 23 | NA |
| 291 | 36.41 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 23 | NA |
| 292 | 36.41 | wind | 1.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 297 | 36.41 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 23 | NA |
| 305 | 36.43 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 5 |
| 317 | 36.45 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 322 | 36.45 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 351 | 36.51 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 1 | NA |
| 353 | 36.51 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 359 | 36.52 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 7 |
| 408 | 36.60 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 424 | 36.61 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 425 | 36.61 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 8 |
| 443 | 36.63 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 459 | 36.65 | wind | 1.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 483 | 36.67 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 4 |
| 507 | 36.72 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 578 | 36.82 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 602 | 36.85 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 619 | 36.88 | humidity | 80.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 661 | 36.92 | humidity | 80.0 | 1440 | > th | dose independent | sin | 4 | NA |
| 698 | 36.96 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 707 | 36.96 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 4 | 10 |
| 745 | 37.00 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 15 |
| 779 | 37.03 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 810 | 37.06 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 824 | 37.07 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 4 | 10 |
| 853 | 37.10 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 24 | 17 |
| 887 | 37.13 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 19 | 17 |
| 901 | 37.14 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 24 | 17 |
| 904 | 37.14 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 24 | 17 |
| 909 | 37.15 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 918 | 37.16 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 942 | 37.17 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 953 | 37.18 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 980 | 37.20 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 998 | 37.20 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 23 |