BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0100100 Os01g0100100|J013041H02
(410 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0100100 RabGAP/TBC domain containing protein 827 0.0
Os11g0587500 RabGAP/TBC domain containing protein 78 1e-14
Os07g0525400 RabGAP/TBC domain containing protein 75 1e-13
Os02g0810500 RabGAP/TBC domain containing protein 69 5e-12
Os09g0528800 RabGAP/TBC domain containing protein 67 2e-11
Os08g0547200 RabGAP/TBC domain containing protein 66 5e-11
>Os01g0100100 RabGAP/TBC domain containing protein
Length = 410
Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/410 (97%), Positives = 399/410 (97%)
Query: 1 MSSAAGQDNGDTAGDYIKWMCXXXXXXXXXXXNLQRGVGSLVRDIGDPCLNPSPVKGSKM 60
MSSAAGQDNGDTAGDYIKWMC NLQRGVGSLVRDIGDPCLNPSPVKGSKM
Sbjct: 1 MSSAAGQDNGDTAGDYIKWMCGAGGRAGGAMANLQRGVGSLVRDIGDPCLNPSPVKGSKM 60
Query: 61 LKPEKWHTCFDNDGKVIGFRKALKFIVLGGVDPTIRAEVWEFLLGCYALSSTSEYRRKLR 120
LKPEKWHTCFDNDGKVIGFRKALKFIVLGGVDPTIRAEVWEFLLGCYALSSTSEYRRKLR
Sbjct: 61 LKPEKWHTCFDNDGKVIGFRKALKFIVLGGVDPTIRAEVWEFLLGCYALSSTSEYRRKLR 120
Query: 121 AVRREKYQILVRQCQSMHPSIGTGELAYAVGSKLMDVRTMSKETHIAEEVSTSQQTSQNT 180
AVRREKYQILVRQCQSMHPSIGTGELAYAVGSKLMDVRTMSKETHIAEEVSTSQQTSQNT
Sbjct: 121 AVRREKYQILVRQCQSMHPSIGTGELAYAVGSKLMDVRTMSKETHIAEEVSTSQQTSQNT 180
Query: 181 AGSLVEDSDYGPGGAQQSQKRESCSKSAELVGFNVHNDTSLYDSSNFIVSSTEVNNCSKD 240
AGSLVEDSDYGPGGAQQSQKRESCSKSAELVGFNVHNDTSLYDSSNFIVSSTEVNNCSKD
Sbjct: 181 AGSLVEDSDYGPGGAQQSQKRESCSKSAELVGFNVHNDTSLYDSSNFIVSSTEVNNCSKD 240
Query: 241 SQDYNDMGEPRYDTETFDDYPSLPVTNFFSTDGVGSNGVDKNHCSFSVPEDRLRHRDERM 300
SQDYNDMGEPRYDTETFDDYPSLPVTNFFSTDGVGSNGVDKNHCSFSVPEDRLRHRDERM
Sbjct: 241 SQDYNDMGEPRYDTETFDDYPSLPVTNFFSTDGVGSNGVDKNHCSFSVPEDRLRHRDERM 300
Query: 301 HSFQINNNIDLIIESNSCSSDVFRASNSDSAIFHSDAYKQDRWLDDNGYNREVIDSLRIS 360
HSFQINNNIDLIIESNSCSSDVFRASNSDSAIFHSDAYKQDRWLDDNGYNREVIDSLRIS
Sbjct: 301 HSFQINNNIDLIIESNSCSSDVFRASNSDSAIFHSDAYKQDRWLDDNGYNREVIDSLRIS 360
Query: 361 DAPEADFVDGTKSNSVVASKDRVSEWLWTLHRIGMLYFFFTSSCNYSGIL 410
DAPEADFVDGTKSNSVVASKDRVSEWLWTLHRIGMLYFFFTSSCNYSGIL
Sbjct: 361 DAPEADFVDGTKSNSVVASKDRVSEWLWTLHRIGMLYFFFTSSCNYSGIL 410
>Os11g0587500 RabGAP/TBC domain containing protein
Length = 279
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 55 VKGSKMLKPEKWHTCFDNDGKVIGFRKALKFIVLGGVDPTIRAEVWEFLLGCYALSSTSE 114
+K K L KWH F +G+ + L I GGV PTIR EVWEFLLGC+ ST +
Sbjct: 32 IKVGKTLSVRKWHAAFTREGR-LDIASVLNRIQKGGVHPTIRGEVWEFLLGCFDPGSTFD 90
Query: 115 YRRKLRAVRREKYQILVRQCQSMHPSIGTGELAYA 149
R ++R RR +Y I ++C+ M +G+G++ A
Sbjct: 91 EREQIREKRRIQYAIWKQECKDMDSHVGSGKIITA 125
>Os07g0525400 RabGAP/TBC domain containing protein
Length = 451
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 55 VKGSKMLKPEKWHTCFDNDGKVIGFRKALKFIVLGGVDPTIRAEVWEFLLGCYALSSTSE 114
+K K L KW F DG + L I GGV PT+R EVWEFLLGC+ ST +
Sbjct: 34 IKAGKTLSVRKWQAAFSTDG-CLDIASVLSRIQKGGVHPTVRGEVWEFLLGCFDPRSTFD 92
Query: 115 YRRKLRAVRREKYQILVRQCQSMHPSIGTGELAYA 149
R ++R +RR +Y C+ M +G+G++ A
Sbjct: 93 EREEIRQIRRLQYARWKEDCREMDSHVGSGKVITA 127
>Os02g0810500 RabGAP/TBC domain containing protein
Length = 427
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 61 LKPEKWHTCFDNDGKVIGFRKALKFIVLGGVDPTIRAEVWEFLLGCYALSSTSEYRRKLR 120
L P +W + +G V+ +K + GG P I+ EVWEFLLGCY S +E + +LR
Sbjct: 47 LSPRRWKLLHNEEG-VLDIAGMIKRVQRGGTHPNIKGEVWEFLLGCYDPKSNTEQKSQLR 105
Query: 121 AVRREKYQILVRQCQSMHPSIGTGEL 146
RR +Y+ L +C+ M ++G+G +
Sbjct: 106 QQRRLEYEKLKTKCREMDTAVGSGRV 131
>Os09g0528800 RabGAP/TBC domain containing protein
Length = 579
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 56 KGSKMLKPEKWHTCFDNDGKVIGF-RKALKFIVLGGVDPTIRAEVWEFLLGCYALSSTSE 114
K ++L ++W F +GK+ +K LK + GG++P IRAEVW FLLG Y L+ST +
Sbjct: 100 KRKRVLSRQQWEGLFSANGKLRDRGKKFLKKVRSGGIEPGIRAEVWPFLLGVYDLNSTED 159
Query: 115 YRRKLRAVRREKYQILVRQCQSM 137
R ++ +R++Y+ L RQCQ +
Sbjct: 160 ERNTIKIKKRKEYEKLRRQCQQI 182
>Os08g0547200 RabGAP/TBC domain containing protein
Length = 565
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 56 KGSKMLKPEKWHTCFDNDGKVI-GFRKALKFIVLGGVDPTIRAEVWEFLLGCYALSSTSE 114
K + L W+ F +DGK+ G RK LK + GGV+P IRA+VW FLLG Y L+ST
Sbjct: 90 KRKRPLSCRHWNHLFSSDGKLRDGGRKFLKKVRGGGVEPEIRAKVWPFLLGVYDLNSTEA 149
Query: 115 YRRKLRAVRREKYQILVRQCQS-MHPSIGTG 144
R ++ +R Y+ L R+C +H G+G
Sbjct: 150 ERNVIQTNKRNDYEKLRRKCHHVLHSYKGSG 180
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,093,839
Number of extensions: 583981
Number of successful extensions: 1625
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1624
Number of HSP's successfully gapped: 6
Length of query: 410
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 307
Effective length of database: 11,657,759
Effective search space: 3578932013
Effective search space used: 3578932013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)