Os08g0547200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RabGAP/TBC domain containing protein.
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Os08g0547200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RabGAP/TBC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.31 | 0.32 | 9.91 | 0.549 | 0.552 | -1.04 | 0.203 | 3.91 | -0.1 | 3.68 | 29.44 | 3278 | -- | -- |
| 47.72 | 0.322 | 9.98 | -0.0162 | 0.565 | -0.581 | 0.37 | -- | -0.0903 | 3.19 | 29.19 | 3701 | -- | -- |
| 46.43 | 0.317 | 9.91 | 0.553 | 0.553 | -1.04 | -- | 3.95 | -0.0995 | 3.61 | 29.42 | 3276 | -- | -- |
| 47.08 | 0.32 | 9.98 | -0.0696 | 0.553 | -0.576 | -- | -- | -0.115 | 3.66 | 29.35 | 3263 | -- | -- |
| 62.76 | 0.371 | 9.95 | 0.077 | -- | -1.41 | -- | 4.63 | -0.0325 | -- | 29.19 | 3303 | -- | -- |
| 57.86 | 0.357 | 9.96 | -0.208 | 0.522 | -- | 0.181 | -- | -0.0325 | 3.94 | -- | -- | -- | -- |
| 57.95 | 0.356 | 9.96 | -0.21 | 0.522 | -- | -- | -- | -0.0335 | 3.87 | -- | -- | -- | -- |
| 56.45 | 0.351 | 9.96 | -0.0787 | -- | -0.857 | -- | -- | 0.0132 | -- | 25.79 | 1855 | -- | -- |
| 46.9 | 0.319 | 9.97 | -- | 0.538 | -0.597 | -- | -- | -0.0746 | 3.31 | 28.5 | 2285 | -- | -- |
| 72.91 | 0.399 | 9.96 | -0.189 | -- | -- | -- | -- | -0.0196 | -- | -- | -- | -- | -- |
| 59.12 | 0.36 | 9.96 | -- | 0.518 | -- | -- | -- | -0.0101 | 3.87 | -- | -- | -- | -- |
| 56.55 | 0.351 | 9.95 | -- | -- | -0.865 | -- | -- | 0.0241 | -- | 25.7 | 1848 | -- | -- |
| 73.85 | 0.401 | 9.96 | -- | -- | -- | -- | -- | 0.00134 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.18 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 16 |
| 2 | 46.19 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 18 |
| 3 | 46.20 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 18 |
| 6 | 46.29 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 6 |
| 11 | 46.32 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 16 |
| 21 | 46.36 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 43 | 46.37 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 18 |
| 62 | 46.49 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 78 | 46.50 | temperature | 30 | 4320 | < th | dose independent | sin | 8 | NA |
| 80 | 46.51 | temperature | 30 | 4320 | > th | dose independent | sin | 8 | NA |
| 83 | 46.51 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 4 |
| 115 | 46.55 | temperature | 30 | 4320 | > th | dose dependent | sin | 9 | NA |
| 234 | 46.82 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 17 |
| 239 | 46.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 246 | 46.85 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 16 |
| 256 | 46.89 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 17 |
| 324 | 46.96 | temperature | 30 | 4320 | > th | dose dependent | rect. | 14 | 22 |
| 336 | 46.97 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 12 |
| 385 | 47.01 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 10 |
| 408 | 47.03 | wind | 7 | 43200 | > th | dose dependent | sin | 16 | NA |
| 412 | 47.04 | wind | 7 | 43200 | > th | dose independent | sin | 18 | NA |
| 419 | 47.04 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 420 | 47.04 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 11 |
| 516 | 47.05 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 19 |
| 526 | 47.06 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 19 |
| 587 | 47.08 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 12 |
| 631 | 47.09 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 12 |
| 648 | 47.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 649 | 47.09 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 10 |
| 661 | 47.10 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 14 |
| 694 | 47.11 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 10 |
| 696 | 47.11 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 12 |
| 697 | 47.11 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 14 |
| 707 | 47.11 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 715 | 47.12 | wind | 7 | 43200 | < th | dose independent | sin | 18 | NA |
| 721 | 47.12 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 14 |
| 852 | 47.18 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 8 |
| 858 | 47.18 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 13 |