BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0713000 Os06g0713000|AK105957
(308 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0713000 Zinc finger, B-box domain containing protein 372 e-103
Os02g0646200 Zinc finger, B-box domain containing protein 150 1e-36
Os04g0540200 Zinc finger, B-box domain containing protein 149 3e-36
Os06g0152200 Zinc-finger protein R2931 127 1e-29
Os02g0606200 Zinc finger, B-box domain containing protein 109 2e-24
Os04g0493000 Zinc finger, B-box domain containing protein 108 4e-24
Os12g0209200 Similar to CONSTANS-LIKE a 106 2e-23
Os05g0204600 Zinc finger, B-box domain containing protein 99 3e-21
Os01g0202500 Zinc finger, B-box domain containing protein 98 7e-21
Os09g0527900 Similar to Hd1-like protein 77 2e-14
>Os06g0713000 Zinc finger, B-box domain containing protein
Length = 308
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 202/308 (65%), Positives = 202/308 (65%)
Query: 1 MRVQCDVCAAEPAAVLCCADEAALCSACDRRVHRANRLASKHRRLPLVHPXXXXXXXXXX 60
MRVQCDVCAAEPAAVLCCADEAALCSACDRRVHRANRLASKHRRLPLVHP
Sbjct: 1 MRVQCDVCAAEPAAVLCCADEAALCSACDRRVHRANRLASKHRRLPLVHPSSSSSGDGGA 60
Query: 61 XXXPLCDVCREKRGLVFCVEDRAILCADCDEPIHSANDLTAKHTRFLLVGAKLSPAALAE 120
PLCDVCREKRGLVFCVEDRAILCADCDEPIHSANDLTAKHTRFLLVGAKLSPAALAE
Sbjct: 61 AAAPLCDVCREKRGLVFCVEDRAILCADCDEPIHSANDLTAKHTRFLLVGAKLSPAALAE 120
Query: 121 QPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLDAXXXXXXXXXXXXXXXXXDYL 180
QPLP PLDA DYL
Sbjct: 121 QPLPSSDCSSDDDAAAAATEEEYHSSAASTGAAVSAPLDASSNGAGGGGGVGGSSISDYL 180
Query: 181 TTICPGWRVEDLLPXXXXXXXXXXXXGKEKDERVPFLDADLFDVVAGRPEKKGGAWAPHV 240
TTICPGWRVEDLLP GKEKDERVPFLDADLFDVVAGRPEKKGGAWAPHV
Sbjct: 181 TTICPGWRVEDLLPDDDAFAAAAAQAGKEKDERVPFLDADLFDVVAGRPEKKGGAWAPHV 240
Query: 241 PHLPAWCLDEXXXXXXXXXXXXXXXXXXKQGHVRDSHWSDSDAFAVPEFXXXXXXXXXXX 300
PHLPAWCLDE KQGHVRDSHWSDSDAFAVPEF
Sbjct: 241 PHLPAWCLDEVPVVVAASAAPAATPVKAKQGHVRDSHWSDSDAFAVPEFSPPPPPAKRAR 300
Query: 301 XXXQFWCF 308
QFWCF
Sbjct: 301 PSSQFWCF 308
>Os02g0646200 Zinc finger, B-box domain containing protein
Length = 269
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 90/119 (75%), Gaps = 3/119 (2%)
Query: 1 MRVQCDVCAAEPAAVLCCADEAALCSACDRRVHRANRLASKHRRLPLVHPXXXXXXXXXX 60
M+VQCDVCAAE A+V CCADEAALC ACD RVHRAN+LA KHRR L++P
Sbjct: 1 MKVQCDVCAAEAASVFCCADEAALCDACDHRVHRANKLAGKHRRFSLLNP-SASGRSPTS 59
Query: 61 XXXPLCDVCREKRGLVFCVEDRAILCADCDEPIHSANDLTAKHTRFLLVGAKLS--PAA 117
PLCD+C+EKRG +FC EDRAILC +CD P+H+A++LT +H+R+LL G +LS PAA
Sbjct: 60 TTAPLCDICQEKRGFLFCKEDRAILCRECDVPVHTASELTMRHSRYLLTGVRLSSEPAA 118
>Os04g0540200 Zinc finger, B-box domain containing protein
Length = 250
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 100/193 (51%), Gaps = 23/193 (11%)
Query: 1 MRVQCDVCAAEPAAVLCCADEAALCSACDRRVHRANRLASKHRRLPLVHPXXXXXXXXXX 60
M+VQCDVCAAE A+V CCADEAALC ACDRRVH AN+LA KHRR L+ P
Sbjct: 1 MKVQCDVCAAEAASVFCCADEAALCDACDRRVHSANKLAGKHRRFSLLQP---LASSSSA 57
Query: 61 XXXPLCDVCREKRGLVFCVEDRAILCADCDEPIHSANDLTAKHTRFLLVGAKLSPAALAE 120
PLCD+C+EKRG +FC EDRAILC +CD +H+ ++LT +H RFLL G +LS A + +
Sbjct: 58 QKPPLCDICQEKRGFLFCKEDRAILCRECDVTVHTTSELTRRHGRFLLTGVRLSSAPM-D 116
Query: 121 QPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLDAXXXXXXXXXXXXXXXXXDYL 180
P P + +YL
Sbjct: 117 SPAPSEEEEEEAGEDYSCSP-------------------SSVAGTAAGSASDGSSISEYL 157
Query: 181 TTICPGWRVEDLL 193
T PGW VED L
Sbjct: 158 TKTLPGWHVEDFL 170
>Os06g0152200 Zinc-finger protein R2931
Length = 360
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 73/113 (64%)
Query: 1 MRVQCDVCAAEPAAVLCCADEAALCSACDRRVHRANRLASKHRRLPLVHPXXXXXXXXXX 60
M++QC+ C A A VLCCADEAALC+ACD VH AN+LA KH+R+PL+
Sbjct: 1 MKIQCNACGAAEARVLCCADEAALCTACDEEVHAANKLAGKHQRVPLLSDDGGAAPAAAA 60
Query: 61 XXXPLCDVCREKRGLVFCVEDRAILCADCDEPIHSANDLTAKHTRFLLVGAKL 113
P CD+C+E G FC+EDRA+LC DCD IH+ N + H RFLL G ++
Sbjct: 61 PAVPKCDICQEASGYFFCLEDRALLCRDCDVSIHTVNSFVSVHQRFLLTGVQV 113
>Os02g0606200 Zinc finger, B-box domain containing protein
Length = 271
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 75/117 (64%), Gaps = 9/117 (7%)
Query: 1 MRVQCDVCAAEPAAVLCCADEAALCSACDRRVHRANRLASKHRRLPLVHPXXXXXXXXXX 60
M++QCD C + AAV+CCADEAALC+ACD VH AN+LA KH+RLPL
Sbjct: 1 MKIQCDACESAAAAVVCCADEAALCAACDVEVHAANKLAGKHQRLPL---------EALS 51
Query: 61 XXXPLCDVCREKRGLVFCVEDRAILCADCDEPIHSANDLTAKHTRFLLVGAKLSPAA 117
P CDVC+EK +FCVEDRA+ C DCDEPIH L+ H R+L G ++ A+
Sbjct: 52 ARLPRCDVCQEKAAFIFCVEDRALFCRDCDEPIHVPGTLSGNHQRYLATGIRVGFAS 108
>Os04g0493000 Zinc finger, B-box domain containing protein
Length = 257
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 72/114 (63%), Gaps = 8/114 (7%)
Query: 1 MRVQCDVCAAEPAAVLCCADEAALCSACDRRVHRANRLASKHRRLPLVHPXXXXXXXXXX 60
MR+QCD C A A V+CCADEAALC+ CD +H AN+LASKH+RLPL
Sbjct: 1 MRIQCDACEAAAATVVCCADEAALCARCDVEIHAANKLASKHQRLPL--------DAALP 52
Query: 61 XXXPLCDVCREKRGLVFCVEDRAILCADCDEPIHSANDLTAKHTRFLLVGAKLS 114
P CDVC+EK +FCVEDRA+ C DCDEPIH L+ H R+L G ++
Sbjct: 53 AALPRCDVCQEKAAFIFCVEDRALFCRDCDEPIHVPGTLSGNHQRYLTTGIRVG 106
>Os12g0209200 Similar to CONSTANS-LIKE a
Length = 210
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 69/114 (60%)
Query: 1 MRVQCDVCAAEPAAVLCCADEAALCSACDRRVHRANRLASKHRRLPLVHPXXXXXXXXXX 60
M++ CD C AAVLCCADEAALC CD VH ANRLA KH R+ L+ P
Sbjct: 1 MKIGCDACEQAEAAVLCCADEAALCRRCDAAVHSANRLAGKHTRVALLLPSSSSAAAGDD 60
Query: 61 XXXPLCDVCREKRGLVFCVEDRAILCADCDEPIHSANDLTAKHTRFLLVGAKLS 114
P CD+C+EK G FC+EDRA+LC CD +H+A A H RFL+ G ++
Sbjct: 61 DHHPTCDICQEKTGYFFCLEDRALLCRSCDVAVHTATAHAAAHRRFLITGVRIG 114
>Os05g0204600 Zinc finger, B-box domain containing protein
Length = 378
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 71/119 (59%), Gaps = 5/119 (4%)
Query: 1 MRVQCDVCAAEPAAVLCCADEAALCSACDRRVHRANRLASKHRRLPLVHPXXXXXXXXXX 60
M++ C C A A+VLCCADEAALC+ CDR +H ANRLA KH RLPL+ P
Sbjct: 37 MKLLCSACEAAEASVLCCADEAALCARCDRDIHAANRLAGKHLRLPLLSPASSSSSSAAA 96
Query: 61 XXXPL-----CDVCREKRGLVFCVEDRAILCADCDEPIHSANDLTAKHTRFLLVGAKLS 114
P CD+C+E FC+EDRA+LC CD +H+AN + H RFLL G ++
Sbjct: 97 LAPPPPSPPKCDICQESHAYFFCLEDRALLCRSCDVAVHTANAFVSAHRRFLLTGVQVG 155
>Os01g0202500 Zinc finger, B-box domain containing protein
Length = 357
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 68/114 (59%), Gaps = 4/114 (3%)
Query: 1 MRVQCDVCAAEPAAVLCCADEAALCSACDRRVHRANRLASKHRRLPLVHPXXXXXXXXXX 60
M+V C C A A VLCCAD+AALC+ CD VH ANRLA KH RLPL+
Sbjct: 1 MKVLCSACEAAEARVLCCADDAALCARCDLHVHAANRLAGKHHRLPLL----SSSSSSSS 56
Query: 61 XXXPLCDVCREKRGLVFCVEDRAILCADCDEPIHSANDLTAKHTRFLLVGAKLS 114
P CD+C++ FCVEDRA+LC CD +H+AN L + H RFLL G +
Sbjct: 57 PSPPTCDICQDAHAYFFCVEDRALLCRACDVAVHTANALVSAHRRFLLTGVHVG 110
>Os09g0527900 Similar to Hd1-like protein
Length = 211
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 1 MRVQCDVCAAEPAAVLCCADEAALCSACDRRVHRANRLASKHRRLPLVHPXXXXXXXXXX 60
MR CDVC + PA + C ADEAALC +CD +VH N+LA +H R+ L P
Sbjct: 1 MRTICDVCESAPAVLFCVADEAALCRSCDEKVHMCNKLARRHVRVGLADPNKVQR----- 55
Query: 61 XXXPLCDVCREKRGLVFCVEDRAILCADCDEPIHSANDLTAKHTRFLLVGAKL 113
CD+C +C D LC CD +H T H R+LL+ ++
Sbjct: 56 -----CDICENAPAFFYCEIDGTSLCLSCDMTVHVGGKRT--HGRYLLLRQRV 101
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.139 0.478
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,652,511
Number of extensions: 239446
Number of successful extensions: 684
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 650
Number of HSP's successfully gapped: 14
Length of query: 308
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 207
Effective length of database: 11,762,187
Effective search space: 2434772709
Effective search space used: 2434772709
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)