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Os04g0493000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, B-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.2 (0.0206) R2 : 0.921
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.04 (0.0842) R2dC : 0.3 R2C : 0.708
β3 : -2.25 (0.11) R2dE : 0.215 R2E : 0.615
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.221 (0.0441) R2dN8 : 0.00519 R2N8 : -0.00493
σ : 0.387
deviance : 68.98
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C
peak time of C : 12.1
E
wheather : temperature
threshold : 15.9
memory length : 180
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.4
open length of G : 8.7

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.12 0.358 15.2 0.677 1.93 -2.49 -0.547 0.582 0.277 12 16.27 252 18.1 8.37
58.19 0.355 15.2 0.638 1.98 -2.44 -0.582 -- 0.237 11.9 15.88 220 18.2 8.67
58.18 0.355 15.2 0.685 1.97 -2.46 -- 1.3 0.279 12.1 16.03 222 18.2 8.58
59.95 0.361 15.2 0.592 2 -2.39 -- -- 0.275 12.1 16.11 203 18.2 8.69
102.99 0.473 15.2 0.811 -- -3.63 -- 0.885 0.4 -- 7.037 151 18.4 9.32
127.21 0.529 15.2 0.423 3.44 -- -0.328 -- 0.0898 12.1 -- -- -- --
127.67 0.529 15.2 0.41 3.44 -- -- -- 0.0883 12.1 -- -- -- --
93 0.449 15.2 0.693 -- -4.16 -- -- 0.253 -- 9.526 217 18 9.2
68.98 0.387 15.2 -- 2.04 -2.25 -- -- 0.221 12.1 15.9 180 18.4 8.7
872.89 1.38 15.3 0.302 -- -- -- -- 0.0393 -- -- -- -- --
132.1 0.538 15.2 -- 3.44 -- -- -- 0.0427 12.1 -- -- -- --
87.96 0.437 15.3 -- -- -4.17 -- -- 0.148 -- 7.899 316 16.5 10.1
875.29 1.38 15.3 -- -- -- -- -- 0.00582 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 60.28 temperature 15 270 > th dose dependent rect. 18 8
3 63.56 temperature 20 90 > th dose independent rect. 19 9
23 70.65 temperature 20 10 > th dose independent rect. 20 9
26 70.80 temperature 20 90 > th dose independent rect. 8 20
63 76.49 temperature 15 10 > th dose dependent rect. 20 9
86 78.68 temperature 30 270 < th dose dependent rect. 15 16
279 87.89 temperature 25 270 < th dose dependent sin 14 NA
297 88.16 temperature 15 270 > th dose dependent rect. 18 17
320 88.85 atmosphere 1015 90 < th dose dependent rect. 19 9
357 89.68 temperature 20 90 > th dose independent rect. 20 17
383 90.17 temperature 20 10 > th dose independent rect. 20 18
390 90.32 temperature 20 90 > th dose independent rect. 19 19
392 90.36 atmosphere 1010 90 < th dose independent rect. 18 10
420 90.89 temperature 10 90 > th dose dependent rect. 8 20
427 91.11 temperature 20 90 > th dose independent sin 13 NA
450 91.50 temperature 20 90 < th dose independent sin 13 NA
514 92.23 temperature 25 720 < th dose dependent rect. 13 10
536 92.47 temperature 20 10 < th dose independent sin 12 NA
553 92.63 temperature 20 90 < th dose independent rect. 17 14
575 92.81 temperature 25 720 < th dose dependent rect. 17 5
598 92.95 atmosphere 1015 10 < th dose dependent rect. 20 9
640 93.25 temperature 25 720 < th dose dependent rect. 19 2
645 93.27 temperature 20 90 < th dose independent rect. 17 12
648 93.27 atmosphere 995 270 > th dose dependent rect. 12 19
672 93.41 temperature 10 10 > th dose dependent rect. 8 21
698 93.58 temperature 20 10 < th dose independent rect. 16 14
727 93.80 temperature 20 10 < th dose independent rect. 16 16
775 94.06 temperature 10 270 > th dose dependent sin 11 NA
979 95.15 atmosphere 995 10 > th dose dependent rect. 14 18