BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0493000 Os04g0493000|AB001883
(257 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G06040.1 | chr1:1828662-1829659 REVERSE LENGTH=249 163 9e-41
AT2G31380.1 | chr2:13382150-13383302 FORWARD LENGTH=239 150 7e-37
AT1G78600.2 | chr1:29567370-29568662 FORWARD LENGTH=320 94 6e-20
AT1G75540.1 | chr1:28366059-28367398 FORWARD LENGTH=332 84 8e-17
AT4G39070.1 | chr4:18205061-18206421 REVERSE LENGTH=243 82 3e-16
AT4G10240.1 | chr4:6368967-6369526 REVERSE LENGTH=163 77 1e-14
AT5G15850.1 | chr5:5176297-5177473 REVERSE LENGTH=356 60 1e-09
AT2G24790.1 | chr2:10566959-10567946 FORWARD LENGTH=295 59 4e-09
AT5G24930.1 | chr5:8589325-8590949 FORWARD LENGTH=407 58 5e-09
AT2G21320.1 | chr2:9126502-9127652 FORWARD LENGTH=173 55 4e-08
AT3G02380.1 | chr3:487438-488624 REVERSE LENGTH=348 55 4e-08
AT5G15840.1 | chr5:5171343-5172697 REVERSE LENGTH=374 53 1e-07
AT2G33500.1 | chr2:14188159-14190046 REVERSE LENGTH=403 47 1e-05
>AT1G06040.1 | chr1:1828662-1829659 REVERSE LENGTH=249
Length = 248
Score = 163 bits (412), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 127/239 (53%), Gaps = 19/239 (7%)
Query: 24 LCARCDVEIHAANKLASKHQRXXXXXXXXXXXXRCDVCQEKAAFIFCVEDRALFCRDCDE 83
LC +CD+EIHAANKLASKHQR RCD+CQEKAAFIFCVEDRAL CRDCDE
Sbjct: 24 LCPQCDIEIHAANKLASKHQRLHLNSLSTKFP-RCDICQEKAAFIFCVEDRALLCRDCDE 82
Query: 84 PIHVPGTLSGNHQRYLTTGIRVGF-SSVCSANADHLXXXXXXXXXXXXXXXXXXXXXXXX 142
IHV + S NHQR+L TGI+V S++CS +
Sbjct: 83 SIHVANSRSANHQRFLATGIKVALTSTICSKEIE----------KNQPEPSNNQQKANQI 132
Query: 143 XXXXXXQEVPSSPFLPPSGWAVEDLLQLSDYESSDKKGS-PIGFKDLEWLDDIDLFHVQS 201
Q+ P WAV+D SD ES+DKKG +G +L+W D+ F Q
Sbjct: 133 PAKSTSQQQQQPSSATPLPWAVDDFFHFSDIESTDKKGQLDLGAGELDWFSDMGFFGDQI 192
Query: 202 PAKGGSTAAEVPELFASPQPASNMGLYKASGARQS-KKPRVEI--PDDDEDFFIVPDLG 257
K AAEVPEL S ++ YK + S KKPR E DDDE+ FIVPDLG
Sbjct: 193 NDK-ALPAAEVPELSVS--HLGHVHSYKPMKSNVSHKKPRFETRYDDDDEEHFIVPDLG 248
>AT2G31380.1 | chr2:13382150-13383302 FORWARD LENGTH=239
Length = 238
Score = 150 bits (378), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 95/235 (40%), Positives = 119/235 (50%), Gaps = 21/235 (8%)
Query: 24 LCARCDVEIHAANKLASKHQRXXXXXXXXXXXXRCDVCQEKAAFIFCVEDRALFCRDCDE 83
LCA+CDVE+HAANKLASKHQR CD+C EKAAFIFCVEDRAL CRDCDE
Sbjct: 24 LCAKCDVEVHAANKLASKHQRLFLDSLSTKFPP-CDICLEKAAFIFCVEDRALLCRDCDE 82
Query: 84 PIHVPGTLSGNHQRYLTTGIRVGFSSVCSANADHLXXXXXXXXXXXXXXXXXXXXXXXXX 143
H P T S NHQR+L TGIRV SS S N +
Sbjct: 83 ATHAPNTRSANHQRFLATGIRVALSST-SCNQE-----------------VEKNHFDPSN 124
Query: 144 XXXXXQEVPSSPFLPPSGWAVEDLLQLSDYESSDKKGSPIGFKDLEWLDDIDLFHVQSPA 203
+ P P WA ++ SD + S+K+ + +L+WL ++ LF Q P
Sbjct: 125 QQSLSKPPTQQPAAPSPLWATDEFFSYSDLDCSNKEKEQLDLGELDWLAEMGLFGDQ-PD 183
Query: 204 KGGSTAAEVPELFASPQPASNMGLYKASGARQSKKPRVEIP-DDDEDFFIVPDLG 257
+ AEVPEL S ++ +KK R+E DD+E+ F+VPDLG
Sbjct: 184 QEALPVAEVPELSFSHLAHAHSYNRPMKSNVPNKKQRLEYRYDDEEEHFLVPDLG 238
>AT1G78600.2 | chr1:29567370-29568662 FORWARD LENGTH=320
Length = 319
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 24 LCARCDVEIHAANKLASKHQRXXXXXXXXXXXXRCDVCQEKAAFIFCVEDRALFCRDCDE 83
LC CD +IHAANKLA KHQR +CD+CQE + F FC++DRAL CR CD
Sbjct: 24 LCWACDEKIHAANKLAGKHQRVPLSASASSIP-KCDICQEASGFFFCLQDRALLCRKCDV 82
Query: 84 PIHVPGTLSGNHQRYLTTGIRVGFSSV 110
IH HQR+L TGI+VG S+
Sbjct: 83 AIHTVNPHVSAHQRFLLTGIKVGLESI 109
>AT1G75540.1 | chr1:28366059-28367398 FORWARD LENGTH=332
Length = 331
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 24 LCARCDVEIHAANKLASKHQRXXXXXXXXXXXXR--CDVCQEKAAFIFCVEDRALFCRDC 81
LC CD ++H ANKLASKH R CD+CQ+K A +FC +DRA+ C+DC
Sbjct: 24 LCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDICQDKKALLFCQQDRAILCKDC 83
Query: 82 DEPIHVPGTLSGNHQRYLTTGIRVGFSS 109
D IH + H R+L TG+++ +S
Sbjct: 84 DSSIHAANEHTKKHDRFLLTGVKLSATS 111
>AT4G39070.1 | chr4:18205061-18206421 REVERSE LENGTH=243
Length = 242
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 48/85 (56%)
Query: 24 LCARCDVEIHAANKLASKHQRXXXXXXXXXXXXRCDVCQEKAAFIFCVEDRALFCRDCDE 83
LC CD +H ANKLA KH R CD+C E+ A +FC EDRA+ CR+CD
Sbjct: 24 LCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDICGERRALLFCQEDRAILCRECDI 83
Query: 84 PIHVPGTLSGNHQRYLTTGIRVGFS 108
PIH + H R+L TG+++ S
Sbjct: 84 PIHQANEHTKKHNRFLLTGVKISAS 108
>AT4G10240.1 | chr4:6368967-6369526 REVERSE LENGTH=163
Length = 162
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 24 LCARCDVEIHAANKLASKHQRXXXXXXXXXXXXR-----CDVCQEKAAFIFCVEDRALFC 78
LC CD+++H ANKL +H R CD+CQE+ + FC+EDRA+ C
Sbjct: 24 LCKPCDIKVHEANKLFQRHHRVALQKDAASATTASGAPLCDICQERKGYFFCLEDRAMLC 83
Query: 79 RDCDEPIHVPGTLSGNHQRYLTTGIRVGFSSV 110
DCDE IH + HQR+L +G++V S+
Sbjct: 84 NDCDEAIHTCNS----HQRFLLSGVQVSDQSL 111
>AT5G15850.1 | chr5:5176297-5177473 REVERSE LENGTH=356
Length = 355
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 24 LCARCDVEIHAANKLASKHQRXXXXXXXXXXXXRCDVCQEKAAFIFCVEDRALFCRDCDE 83
LC+ CD ++HAAN+LAS+H+R C C+ A FC D A C CD
Sbjct: 31 LCSSCDAQVHAANRLASRHERVRV----------CQSCERAPAAFFCKADAASLCTTCDS 80
Query: 84 PIHVPGTLSGNHQR 97
IH L+ HQR
Sbjct: 81 EIHSANPLARRHQR 94
>AT2G24790.1 | chr2:10566959-10567946 FORWARD LENGTH=295
Length = 294
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 24 LCARCDVEIHAANKLASKHQRXXXXXXXXXXXXRCDVCQEKAAFIFCVEDRALFCRDCDE 83
LC CD +IH ANKLAS+H+R C+VC++ A + C D A C CD
Sbjct: 27 LCGDCDGKIHTANKLASRHERVWL----------CEVCEQAPAHVTCKADAAALCVTCDR 76
Query: 84 PIHVPGTLSGNHQR 97
IH LS H+R
Sbjct: 77 DIHSANPLSRRHER 90
>AT5G24930.1 | chr5:8589325-8590949 FORWARD LENGTH=407
Length = 406
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 24 LCARCDVEIHAANKLASKHQRXXXXXXXXXXXXRCDVCQEKAAFIFCVEDRALFCRDCDE 83
LC CD ++HAANKLAS+H R C+VC++ A + C D A C CD
Sbjct: 69 LCLSCDSKVHAANKLASRHARVWM----------CEVCEQAPAHVTCKADAAALCVTCDR 118
Query: 84 PIHVPGTLSGNHQRYLTT 101
IH L+ H+R T
Sbjct: 119 DIHSANPLARRHERVPVT 136
>AT2G21320.1 | chr2:9126502-9127652 FORWARD LENGTH=173
Length = 172
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 24 LCARCDVEIHAANKLASKHQRXXXXXXXXXXXXRCDVCQEKAAFIFCVEDRALFCRDCDE 83
LC CD ++H NKLAS+H R CD+C+ AF +C D + C CD
Sbjct: 24 LCCSCDEKVHKCNKLASRHLRVGLADPSNAPS--CDICENAPAFFYCEIDGSSLCLQCDM 81
Query: 84 PIHVPGTLSGNHQRYLTTGIRVGF 107
+HV G + H+R+L R+ F
Sbjct: 82 VVHVGGKRT--HRRFLLLRQRIEF 103
>AT3G02380.1 | chr3:487438-488624 REVERSE LENGTH=348
Length = 347
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 24 LCARCDVEIHAANKLASKHQRXXXXXXXXXXXXRCDVCQEKAAFIFCVEDRALFCRDCDE 83
LC CD +HAAN++AS+H+R C C+ A C D A C CD
Sbjct: 35 LCTTCDARVHAANRVASRHERVRV----------CQSCESAPAAFLCKADAASLCTACDA 84
Query: 84 PIHVPGTLSGNHQR 97
IH L+ HQR
Sbjct: 85 EIHSANPLARRHQR 98
>AT5G15840.1 | chr5:5171343-5172697 REVERSE LENGTH=374
Length = 373
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 24 LCARCDVEIHAANKLASKHQRXXXXXXXXXXXXRCDVCQEKAAFIFCVEDRALFCRDCDE 83
LC CD ++H+AN++AS+H+R C+ C+ A C D A C CD
Sbjct: 39 LCMSCDAQVHSANRVASRHKRVRV----------CESCERAPAAFLCEADDASLCTACDS 88
Query: 84 PIHVPGTLSGNHQR 97
+H L+ HQR
Sbjct: 89 EVHSANPLARRHQR 102
>AT2G33500.1 | chr2:14188159-14190046 REVERSE LENGTH=403
Length = 402
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 24 LCARCDVEIHAANKLASKHQRXXXXXXXXXXXXRCDVCQEKAAFIFCVEDRALFCRDCDE 83
LC CD +H+AN L+ KH R CD C ++ + C D + C++CD
Sbjct: 31 LCLPCDQHVHSANLLSRKHVRSQI----------CDNCSKEPVSVRCFTDNLVLCQECDW 80
Query: 84 PIHVPGTLSGNHQRYLTTGI 103
+H + S H+R G
Sbjct: 81 DVHGSCSSSATHERSAVEGF 100
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,715,610
Number of extensions: 177139
Number of successful extensions: 536
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 511
Number of HSP's successfully gapped: 18
Length of query: 257
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 161
Effective length of database: 8,474,633
Effective search space: 1364415913
Effective search space used: 1364415913
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)