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Os04g0540200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, B-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0321) R2 : 0.796
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.68 (0.116) R2dC : 0.204 R2C : 0.536
β3 : 1.58 (0.0973) R2dE : 0.255 R2E : 0.589
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.195 (0.0673) R2dN8 : 0.00486 R2N8 : 0.00238
σ : 0.6
deviance : 166.21
__
_____
C
peak time of C : 21.5
E
wheather : radiation
threshold : 20.56
memory length : 9
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
152.06 0.579 11.1 -0.478 1.68 1.57 1.24 -1.97 0.142 21.6 20.19 10 -- --
163.13 0.599 11.1 -0.465 1.87 1.39 -0.739 -- 0.132 21.9 21.91 18 -- --
153.97 0.578 11.1 -0.501 1.68 1.58 -- -1.13 0.14 21.6 20.69 9 -- --
160.78 0.591 11.1 -0.454 1.71 1.54 -- -- 0.148 21.6 20.33 9 -- --
219.06 0.689 11 -0.492 -- 2.55 -- -1.21 0.126 -- 15.56 4 -- --
201.25 0.665 11.1 -0.522 3.12 -- -0.607 -- 0.125 22.7 -- -- -- --
202.79 0.667 11.1 -0.498 3.13 -- -- -- 0.127 22.7 -- -- -- --
225.97 0.7 11 -0.486 -- 2.54 -- -- 0.139 -- 14.61 3 -- --
166.21 0.6 11.1 -- 1.68 1.58 -- -- 0.195 21.5 20.56 9 -- --
806.4 1.33 11 -0.436 -- -- -- -- 0.145 -- -- -- -- --
209.31 0.677 11.1 -- 3.12 -- -- -- 0.183 22.7 -- -- -- --
231.2 0.708 11 -- -- 2.54 -- -- 0.201 -- 14.5 2 -- --
811.41 1.33 11 -- -- -- -- -- 0.194 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 141.59 radiation 20.0 10 < th dose dependent rect. 2 17
2 143.93 radiation 20.0 10 < th dose dependent sin 1 NA
5 144.34 radiation 40.0 10 < th dose dependent rect. 13 20
6 144.45 radiation 40.0 10 < th dose dependent rect. 12 22
11 144.83 humidity 80.0 270 > th dose independent rect. 23 9
45 147.53 radiation 20.0 10 < th dose independent rect. 2 17
51 148.19 radiation 1.0 270 > th dose independent rect. 4 9
83 149.74 humidity 50.0 270 > th dose dependent rect. 23 9
96 150.46 radiation 10.0 10 > th dose independent sin 0 NA
97 150.46 humidity 80.0 270 > th dose independent rect. 24 15
115 151.14 radiation 40.0 90 < th dose independent rect. 13 6
125 151.62 humidity 60.0 90 > th dose dependent rect. 1 9
129 151.71 radiation 40.0 90 < th dose dependent rect. 13 6
138 152.11 atmosphere 995.0 270 > th dose independent rect. 13 17
141 152.15 radiation 30.0 270 < th dose dependent rect. 23 9
163 152.61 radiation 20.0 30 < th dose independent rect. 12 22
167 152.64 precipitation 0.1 270 < th dose independent rect. 18 19
168 152.64 precipitation 0.1 270 < th dose dependent rect. 18 19
169 152.66 precipitation 0.1 270 < th dose independent rect. 6 7
170 152.66 precipitation 0.1 270 < th dose dependent rect. 6 7
174 152.75 temperature 10.0 270 > th dose independent rect. 6 7
175 152.75 atmosphere 995.0 270 > th dose independent rect. 6 7
176 152.75 atmosphere 1015.0 270 < th dose independent rect. 6 7
177 152.75 temperature 10.0 270 > th dose independent rect. 13 17
184 152.85 wind 1.0 270 > th dose independent rect. 6 7
185 152.85 radiation 40.0 90 < th dose dependent rect. 1 9
192 152.90 radiation 20.0 90 < th dose independent rect. 1 9
193 152.93 radiation 20.0 10 < th dose dependent rect. 15 23
201 153.06 precipitation 0.1 270 < th dose independent rect. 19 16
202 153.06 precipitation 0.1 270 < th dose dependent rect. 19 16
205 153.12 radiation 20.0 10 < th dose dependent no NA NA
206 153.14 atmosphere 1015.0 270 < th dose independent rect. 13 17
218 153.28 humidity 50.0 270 > th dose independent rect. 6 7
219 153.28 radiation 10.0 10 > th dose independent rect. 6 9
238 153.36 wind 9.0 270 < th dose independent rect. 6 7
286 153.88 humidity 80.0 90 < th dose independent rect. 4 10
289 153.92 atmosphere 1015.0 270 < th dose independent rect. 23 8
296 154.02 wind 1.0 270 > th dose independent rect. 7 17
299 154.04 wind 9.0 270 < th dose independent rect. 13 17
325 154.18 humidity 60.0 270 > th dose independent rect. 17 8
342 154.41 radiation 20.0 270 < th dose independent rect. 23 8
349 154.47 humidity 80.0 90 < th dose independent rect. 23 15
350 154.50 radiation 40.0 270 < th dose independent rect. 13 4
371 154.58 atmosphere 1000.0 90 > th dose independent rect. 13 6
379 154.67 temperature 15.0 270 > th dose independent rect. 23 8
390 154.75 humidity 60.0 90 > th dose dependent rect. 1 17
414 154.98 radiation 20.0 270 < th dose dependent rect. 17 8
419 155.06 humidity 50.0 10 > th dose dependent rect. 2 17
433 155.18 temperature 30.0 270 < th dose independent rect. 23 8
434 155.18 humidity 50.0 270 > th dose independent rect. 23 8
436 155.18 atmosphere 995.0 270 > th dose independent rect. 23 8
439 155.18 temperature 10.0 270 > th dose independent rect. 7 16
444 155.22 wind 9.0 270 < th dose independent rect. 23 8
446 155.22 radiation 20.0 10 < th dose dependent rect. 6 13
455 155.28 precipitation 0.1 270 < th dose independent rect. 13 17
456 155.28 precipitation 0.1 270 < th dose dependent rect. 13 17
470 155.41 precipitation 0.1 270 < th dose independent rect. 7 16
471 155.41 precipitation 0.1 270 < th dose dependent rect. 7 16
488 155.48 atmosphere 995.0 270 > th dose independent rect. 1 16
490 155.51 temperature 10.0 270 > th dose independent rect. 13 5
492 155.51 atmosphere 1010.0 270 < th dose independent rect. 13 5
494 155.51 temperature 10.0 270 > th dose independent rect. 18 19
499 155.57 wind 9.0 270 < th dose independent rect. 7 16
502 155.58 wind 9.0 270 < th dose independent rect. 17 8
506 155.64 precipitation 0.1 270 < th dose independent rect. 17 8
507 155.64 precipitation 0.1 270 < th dose dependent rect. 17 8
511 155.66 radiation 1.0 270 < th dose independent rect. 17 7
512 155.67 temperature 10.0 270 > th dose independent rect. 17 8
513 155.67 radiation 20.0 270 < th dose independent rect. 17 8
516 155.67 temperature 10.0 270 > th dose independent rect. 1 16
517 155.67 atmosphere 1015.0 270 < th dose independent rect. 1 16
523 155.74 precipitation 0.1 270 < th dose independent rect. 13 5
524 155.74 precipitation 0.1 270 < th dose dependent rect. 13 5
553 155.79 wind 1.0 270 > th dose independent rect. 18 6
559 155.84 wind 1.0 270 > th dose independent rect. 17 8
564 155.89 temperature 30.0 270 < th dose independent rect. 17 8
566 155.91 temperature 15.0 270 > th dose independent rect. 11 8
570 155.93 temperature 10.0 270 > th dose dependent rect. 24 7
575 155.98 wind 9.0 270 < th dose independent rect. 18 19
576 155.98 atmosphere 995.0 270 > th dose independent rect. 18 19
592 156.03 wind 9.0 270 < th dose independent rect. 1 16
593 156.03 humidity 50.0 270 > th dose independent rect. 18 19
597 156.07 humidity 50.0 10 > th dose dependent rect. 1 9
598 156.08 wind 9.0 270 < th dose independent rect. 13 5
604 156.11 temperature 30.0 270 < th dose independent rect. 18 6
632 156.18 humidity 80.0 10 < th dose independent rect. 4 11
640 156.23 precipitation 0.1 270 < th dose independent rect. 16 22
641 156.23 precipitation 0.1 270 < th dose dependent rect. 16 22
645 156.25 humidity 80.0 10 < th dose independent rect. 22 17
646 156.25 atmosphere 995.0 270 > th dose independent rect. 24 18
670 156.36 atmosphere 1015.0 270 < th dose independent rect. 11 8
672 156.36 temperature 10.0 270 > th dose independent rect. 19 16
673 156.36 atmosphere 995.0 270 > th dose independent rect. 19 16
675 156.37 radiation 10.0 10 > th dose independent no NA NA
761 156.44 precipitation 0.1 270 < th dose independent rect. 18 6
763 156.44 precipitation 0.1 270 < th dose dependent rect. 18 6
770 156.48 humidity 80.0 10 < th dose independent rect. 2 13
771 156.49 wind 9.0 270 < th dose independent rect. 18 6
773 156.50 atmosphere 1015.0 270 < th dose independent rect. 24 18
775 156.51 wind 1.0 270 > th dose independent rect. 13 5
777 156.52 temperature 10.0 270 > th dose independent rect. 18 6
779 156.52 radiation 20.0 270 < th dose independent rect. 18 6
782 156.52 temperature 10.0 270 > th dose independent rect. 24 18
784 156.52 radiation 10.0 10 > th dose independent rect. 9 23
803 156.57 radiation 40.0 270 < th dose independent rect. 13 17
806 156.58 wind 9.0 270 < th dose independent rect. 19 16
855 156.70 wind 9.0 270 < th dose independent rect. 24 18
871 156.78 precipitation 0.1 270 < th dose independent rect. 11 8
872 156.78 precipitation 0.1 270 < th dose dependent rect. 11 8
877 156.84 humidity 80.0 90 < th dose independent sin 5 NA
888 156.85 humidity 50.0 270 > th dose independent rect. 19 16
894 156.87 atmosphere 995.0 90 > th dose independent rect. 19 7
917 156.94 atmosphere 995.0 270 > th dose independent rect. 17 8
918 156.94 atmosphere 995.0 270 > th dose dependent rect. 13 5
971 157.14 wind 9.0 270 < th dose independent rect. 11 8