BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0540200 Os04g0540200|AK061333
(250 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G75540.1 | chr1:28366059-28367398 FORWARD LENGTH=332 108 2e-24
AT4G39070.1 | chr4:18205061-18206421 REVERSE LENGTH=243 105 2e-23
AT1G78600.2 | chr1:29567370-29568662 FORWARD LENGTH=320 98 3e-21
AT1G06040.1 | chr1:1828662-1829659 REVERSE LENGTH=249 91 6e-19
AT2G31380.1 | chr2:13382150-13383302 FORWARD LENGTH=239 87 1e-17
AT4G10240.1 | chr4:6368967-6369526 REVERSE LENGTH=163 83 1e-16
AT2G21320.1 | chr2:9126502-9127652 FORWARD LENGTH=173 60 1e-09
AT2G24790.1 | chr2:10566959-10567946 FORWARD LENGTH=295 56 1e-08
AT5G15850.1 | chr5:5176297-5177473 REVERSE LENGTH=356 55 5e-08
AT5G24930.1 | chr5:8589325-8590949 FORWARD LENGTH=407 54 7e-08
AT3G02380.1 | chr3:487438-488624 REVERSE LENGTH=348 52 2e-07
AT5G15840.1 | chr5:5171343-5172697 REVERSE LENGTH=374 52 3e-07
AT4G15250.1 | chr4:8709942-8711106 REVERSE LENGTH=331 51 5e-07
AT4G38960.3 | chr4:18161576-18163045 FORWARD LENGTH=227 51 6e-07
AT3G07650.1 | chr3:2442494-2443901 FORWARD LENGTH=373 50 9e-07
AT5G48250.1 | chr5:19561719-19563113 REVERSE LENGTH=374 50 1e-06
AT2G47890.1 | chr2:19608245-19609476 FORWARD LENGTH=333 47 7e-06
>AT1G75540.1 | chr1:28366059-28367398 FORWARD LENGTH=332
Length = 331
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 66/110 (60%), Gaps = 3/110 (2%)
Query: 1 MKVQCDVCAAEAASVFXXXXXXXXXXXXXRRVHSANKLAGKHRRFXXXXXXXXXXXXXXX 60
MK++CDVC E ASVF +VH ANKLA KH RF
Sbjct: 1 MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPL- 59
Query: 61 XXCDICQEKRGFLFCKEDRAILCRECDVTVHTTSELTRRHGRFLLTGVRL 110
CDICQ+K+ LFC++DRAILC++CD ++H +E T++H RFLLTGV+L
Sbjct: 60 --CDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKL 107
>AT4G39070.1 | chr4:18205061-18206421 REVERSE LENGTH=243
Length = 242
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 64/110 (58%), Gaps = 5/110 (4%)
Query: 1 MKVQCDVCAAEAASVFXXXXXXXXXXXXXRRVHSANKLAGKHRRFXXXXXXXXXXXXXXX 60
MK+ C VC E ASVF R VH ANKLAGKH RF
Sbjct: 1 MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPL--- 57
Query: 61 XXCDICQEKRGFLFCKEDRAILCRECDVTVHTTSELTRRHGRFLLTGVRL 110
CDIC E+R LFC+EDRAILCRECD+ +H +E T++H RFLLTGV++
Sbjct: 58 --CDICGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKI 105
>AT1G78600.2 | chr1:29567370-29568662 FORWARD LENGTH=320
Length = 319
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 62/110 (56%), Gaps = 6/110 (5%)
Query: 1 MKVQCDVCAAEAASVFXXXXXXXXXXXXXRRVHSANKLAGKHRRFXXXXXXXXXXXXXXX 60
MK+QC+VC A A+V ++H+ANKLAGKH+R
Sbjct: 1 MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPK---- 56
Query: 61 XXCDICQEKRGFLFCKEDRAILCRECDVTVHTTSELTRRHGRFLLTGVRL 110
CDICQE GF FC +DRA+LCR+CDV +HT + H RFLLTG+++
Sbjct: 57 --CDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKV 104
>AT1G06040.1 | chr1:1828662-1829659 REVERSE LENGTH=249
Length = 248
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 1 MKVQCDVCAAEAASVFXXXXXXXXXXXXXRRVHSANKLAGKHRRFXXXXXXXXXXXXXXX 60
MK+QCDVC A+V +H+ANKLA KH+R
Sbjct: 1 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPR---- 56
Query: 61 XXCDICQEKRGFLFCKEDRAILCRECDVTVHTTSELTRRHGRFLLTGVRL 110
CDICQEK F+FC EDRA+LCR+CD ++H + + H RFL TG+++
Sbjct: 57 --CDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKV 104
>AT2G31380.1 | chr2:13382150-13383302 FORWARD LENGTH=239
Length = 238
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 1 MKVQCDVCAAEAASVFXXXXXXXXXXXXXRRVHSANKLAGKHRRFXXXXXXXXXXXXXXX 60
MK+QCDVC A++ VH+ANKLA KH+R
Sbjct: 1 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPP---- 56
Query: 61 XXCDICQEKRGFLFCKEDRAILCRECDVTVHTTSELTRRHGRFLLTGVRL 110
CDIC EK F+FC EDRA+LCR+CD H + + H RFL TG+R+
Sbjct: 57 --CDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRV 104
>AT4G10240.1 | chr4:6368967-6369526 REVERSE LENGTH=163
Length = 162
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 1 MKVQCDVCAAEAASVFXXXXXXXXXXXXXRRVHSANKLAGKHRRFXXXXXXXXXXXXXXX 60
MK+QC+VC A V +VH ANKL +H R
Sbjct: 1 MKIQCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEANKLFQRHHRVALQKDAASATTASGA 60
Query: 61 XXCDICQEKRGFLFCKEDRAILCRECDVTVHTTSELTRRHGRFLLTGVRL 110
CDICQE++G+ FC EDRA+LC +CD +HT + H RFLL+GV++
Sbjct: 61 PLCDICQERKGYFFCLEDRAMLCNDCDEAIHTCN----SHQRFLLSGVQV 106
>AT2G21320.1 | chr2:9126502-9127652 FORWARD LENGTH=173
Length = 172
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 1 MKVQCDVCAAEAASVFXXXXXXXXXXXXXRRVHSANKLAGKHRRFXXXXXXXXXXXXXXX 60
M++ CD C + AA VF +VH NKLA +H R
Sbjct: 1 MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNAPS----- 55
Query: 61 XXCDICQEKRGFLFCKEDRAILCRECDVTVHTTSELTRRHGRFLLTGVRL 110
CDIC+ F +C+ D + LC +CD+ VH + R H RFLL R+
Sbjct: 56 --CDICENAPAFFYCEIDGSSLCLQCDMVVHVGGK--RTHRRFLLLRQRI 101
>AT2G24790.1 | chr2:10566959-10567946 FORWARD LENGTH=295
Length = 294
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 5 CDVCAAEAASVFXXXXXXXXXXXXXRRVHSANKLAGKHRRFXXXXXXXXXXXXXXXXXCD 64
CD C + AA++F ++H+ANKLA +H R C+
Sbjct: 8 CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL---------------CE 52
Query: 65 ICQEKRGFLFCKEDRAILCRECDVTVHTTSELTRRHGRFLLT 106
+C++ + CK D A LC CD +H+ + L+RRH R +T
Sbjct: 53 VCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPIT 94
>AT5G15850.1 | chr5:5176297-5177473 REVERSE LENGTH=356
Length = 355
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 15/104 (14%)
Query: 5 CDVCAAEAASVFXXXXXXXXXXXXXRRVHSANKLAGKHRRFXXXXXXXXXXXXXXXXXCD 64
CD C + A +V+ +VH+AN+LA +H R C
Sbjct: 12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV---------------CQ 56
Query: 65 ICQEKRGFLFCKEDRAILCRECDVTVHTTSELTRRHGRFLLTGV 108
C+ FCK D A LC CD +H+ + L RRH R + +
Sbjct: 57 SCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPI 100
>AT5G24930.1 | chr5:8589325-8590949 FORWARD LENGTH=407
Length = 406
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 15/102 (14%)
Query: 5 CDVCAAEAASVFXXXXXXXXXXXXXRRVHSANKLAGKHRRFXXXXXXXXXXXXXXXXXCD 64
CD C + A+++ +VH+ANKLA +H R C+
Sbjct: 50 CDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWM---------------CE 94
Query: 65 ICQEKRGFLFCKEDRAILCRECDVTVHTTSELTRRHGRFLLT 106
+C++ + CK D A LC CD +H+ + L RRH R +T
Sbjct: 95 VCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVT 136
>AT3G02380.1 | chr3:487438-488624 REVERSE LENGTH=348
Length = 347
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 15/101 (14%)
Query: 5 CDVCAAEAASVFXXXXXXXXXXXXXRRVHSANKLAGKHRRFXXXXXXXXXXXXXXXXXCD 64
CD C + A +V+ RVH+AN++A +H R C
Sbjct: 16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRV---------------CQ 60
Query: 65 ICQEKRGFLFCKEDRAILCRECDVTVHTTSELTRRHGRFLL 105
C+ CK D A LC CD +H+ + L RRH R +
Sbjct: 61 SCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPI 101
>AT5G15840.1 | chr5:5171343-5172697 REVERSE LENGTH=374
Length = 373
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 15/104 (14%)
Query: 5 CDVCAAEAASVFXXXXXXXXXXXXXRRVHSANKLAGKHRRFXXXXXXXXXXXXXXXXXCD 64
CD C + A +V+ +VHSAN++A +H+R C+
Sbjct: 20 CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRV---------------CE 64
Query: 65 ICQEKRGFLFCKEDRAILCRECDVTVHTTSELTRRHGRFLLTGV 108
C+ C+ D A LC CD VH+ + L RRH R + +
Sbjct: 65 SCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPI 108
>AT4G15250.1 | chr4:8709942-8711106 REVERSE LENGTH=331
Length = 330
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 63 CDICQEKRGFLFCKEDRAILCRECDVTVHTTSELTRRHGRFLL 105
CD C ++ ++CK D A LC CDV VH+ + L++RH R LL
Sbjct: 5 CDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLL 47
>AT4G38960.3 | chr4:18161576-18163045 FORWARD LENGTH=227
Length = 226
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 32 VHSANKLAGKHRRFXXXXXXXXXXXXXXXXXCDICQEKRGFLFCKEDRAILCRECDVTVH 91
VH NKLA +H R CDIC+ F +C+ D + LC +CD+ VH
Sbjct: 75 VHMCNKLASRHVRVGLAEPSNAPC-------CDICENAPAFFYCEIDGSSLCLQCDMVVH 127
Query: 92 TTSELTRRHGRFLLTGVRL 110
+ R HGRFLL R+
Sbjct: 128 VGGK--RTHGRFLLLRQRI 144
>AT3G07650.1 | chr3:2442494-2443901 FORWARD LENGTH=373
Length = 372
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 63 CDICQEKRGFLFCKEDRAILCRECDVTVHTTSELTRRHGRFLL 105
CD C E+R ++C+ D A LC CD +VH+ + L++RH R L+
Sbjct: 5 CDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLV 47
>AT5G48250.1 | chr5:19561719-19563113 REVERSE LENGTH=374
Length = 373
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 63 CDICQEKRGFLFCKEDRAILCRECDVTVHTTSELTRRHGRFLL 105
CD C E+R ++C+ D A LC CD VH+ + L++RH R L+
Sbjct: 5 CDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLV 47
>AT2G47890.1 | chr2:19608245-19609476 FORWARD LENGTH=333
Length = 332
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 5 CDVCAAEAASVFXXXXXXXXXXXXXRRVHSANKLAGKHRRFXXXXXXXXXXXXXXXXXCD 64
CD C + A V+ ++VH AN+L KH R CD
Sbjct: 13 CDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFR---------------SLLCD 57
Query: 65 ICQEKRGFLFCKEDRAILCRECDVTVHTTS 94
C E LFC+ +R++LC+ CD HT S
Sbjct: 58 SCNESPSSLFCETERSVLCQNCDWQHHTAS 87
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.135 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,841,064
Number of extensions: 119180
Number of successful extensions: 355
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 20
Length of query: 250
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 154
Effective length of database: 8,474,633
Effective search space: 1305093482
Effective search space used: 1305093482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 110 (47.0 bits)