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Os02g0606200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, B-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.4 (0.0206) R2 : 0.898
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.54 (0.0559) R2dE : 0.897 R2E : 0.891
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.222 (0.0433) R2dN8 : 0.00755 R2N8 : 0.00178
σ : 0.387
deviance : 68.91
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.06
memory length : 575
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
63.1 0.373 15.4 -0.0282 3.09 1.13 0.44 -0.897 0.115 6.11 2.253 40 -- --
67.67 0.383 15.4 -0.0521 3.04 1.17 0.594 -- 0.122 6.17 2.528 45 -- --
63.39 0.371 15.4 -0.0261 3.06 1.16 -- -0.918 0.118 6.16 2.19 48 -- --
68.39 0.385 15.4 -0.0415 3.04 1.17 -- -- 0.12 6.16 2.52 48 -- --
81.34 0.42 15.4 0.166 -- 3.37 -- 1.97 0.194 -- 1.297 570 -- --
92.63 0.451 15.4 -0.088 3.31 -- 0.0208 -- 0.0622 4.53 -- -- -- --
92.63 0.451 15.4 -0.0881 3.31 -- -- -- 0.062 4.53 -- -- -- --
68.43 0.385 15.4 0.135 -- 3.54 -- -- 0.235 -- 1.956 575 -- --
68.41 0.385 15.4 -- 3.02 1.17 -- -- 0.127 6.17 2.251 55 -- --
676.99 1.22 15.5 0.0402 -- -- -- -- 0.149 -- -- -- -- --
92.84 0.451 15.4 -- 3.31 -- -- -- 0.0719 4.53 -- -- -- --
68.91 0.387 15.4 -- -- 3.54 -- -- 0.222 -- 2.06 575 -- --
677.04 1.21 15.5 -- -- -- -- -- 0.145 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 58.25 temperature 10.0 720 > th dose dependent rect. 13 2
2 58.85 temperature 10.0 720 > th dose dependent rect. 12 4
9 60.44 radiation 1.0 720 < th dose dependent rect. 24 19
11 60.86 radiation 20.0 720 < th dose dependent rect. 17 10
12 61.12 radiation 1.0 720 > th dose independent rect. 12 19
18 61.82 radiation 1.0 720 < th dose independent rect. 24 19
20 62.13 temperature 15.0 30 > th dose dependent rect. 5 21
27 62.62 radiation 1.0 30 < th dose independent rect. 21 23
37 62.96 radiation 20.0 720 < th dose dependent rect. 16 3
40 63.16 radiation 1.0 90 < th dose dependent rect. 21 23
42 63.20 radiation 1.0 30 < th dose independent rect. 15 15
80 63.87 temperature 10.0 270 > th dose dependent rect. 12 12
83 63.98 radiation 1.0 30 < th dose independent rect. 17 23
84 64.00 radiation 1.0 30 > th dose independent no NA NA
85 64.00 radiation 1.0 30 > th dose independent rect. 5 14
140 64.01 radiation 1.0 30 < th dose independent no NA NA
159 64.03 radiation 1.0 30 < th dose dependent rect. 15 15
163 64.05 radiation 20.0 90 < th dose dependent rect. 15 14
182 64.18 radiation 20.0 90 < th dose dependent rect. 10 19
183 64.19 radiation 30.0 720 < th dose independent rect. 15 14
220 64.64 temperature 30.0 90 < th dose dependent rect. 11 18
229 64.65 radiation 1.0 30 < th dose dependent rect. 17 23
231 64.68 radiation 1.0 30 < th dose dependent no NA NA
250 64.72 radiation 1.0 720 < th dose independent rect. 17 2
277 64.88 humidity 50.0 720 > th dose independent rect. 17 10
278 64.92 precipitation 0.1 720 < th dose independent rect. 19 22
279 64.92 precipitation 0.1 720 < th dose dependent rect. 19 22
280 64.93 temperature 10.0 10 > th dose dependent rect. 14 12
285 65.00 temperature 30.0 720 < th dose independent rect. 17 1
302 65.28 humidity 50.0 90 > th dose dependent rect. 17 12
319 65.65 radiation 10.0 720 < th dose independent rect. 16 11
324 65.78 precipitation 0.1 720 < th dose independent rect. 3 14
325 65.78 precipitation 0.1 720 < th dose dependent rect. 3 14
328 65.84 temperature 30.0 90 < th dose dependent rect. 15 14
333 65.93 precipitation 0.1 720 < th dose independent rect. 5 10
334 65.93 precipitation 0.1 720 < th dose dependent rect. 5 10
409 66.42 temperature 30.0 90 < th dose dependent rect. 17 12
416 66.49 humidity 50.0 720 > th dose independent rect. 17 2
687 67.39 temperature 30.0 90 < th dose independent rect. 17 12
695 67.43 radiation 1.0 30 < th dose independent rect. 1 23
698 67.45 humidity 60.0 90 > th dose independent rect. 17 12
777 67.60 temperature 15.0 720 > th dose independent rect. 5 10
789 67.63 wind 9.0 90 < th dose independent rect. 5 12
800 67.70 radiation 1.0 720 > th dose independent rect. 12 5
804 67.73 temperature 15.0 720 > th dose independent rect. 3 14
814 67.80 temperature 10.0 270 > th dose dependent rect. 3 21
826 67.89 temperature 15.0 90 > th dose independent rect. 5 12
848 67.95 radiation 1.0 30 < th dose dependent rect. 1 23
849 67.96 atmosphere 1015.0 720 < th dose independent rect. 3 14
856 68.01 wind 9.0 720 < th dose independent rect. 5 10
887 68.19 precipitation 0.1 720 < th dose independent rect. 20 19
888 68.19 precipitation 0.1 720 < th dose dependent rect. 20 19
900 68.30 radiation 1.0 720 < th dose dependent rect. 7 20
904 68.35 radiation 1.0 720 < th dose independent rect. 7 21
910 68.38 precipitation 0.1 90 < th dose independent rect. 5 12
911 68.38 humidity 70.0 90 > th dose independent rect. 11 18
912 68.38 precipitation 0.1 90 < th dose dependent rect. 5 12
916 68.42 temperature 30.0 720 < th dose dependent rect. 8 11
921 68.47 temperature 30.0 10 < th dose dependent rect. 10 20
924 68.49 wind 9.0 720 < th dose dependent rect. 5 2
939 68.61 temperature 30.0 720 < th dose independent rect. 17 11
945 68.64 precipitation 0.1 720 < th dose independent rect. 5 18
947 68.64 precipitation 0.1 720 < th dose dependent rect. 5 18
949 68.66 precipitation 0.1 720 < th dose independent rect. 5 2
950 68.66 precipitation 0.1 720 < th dose dependent rect. 5 2
954 68.67 atmosphere 1015.0 720 < th dose independent rect. 5 10
955 68.67 temperature 10.0 720 > th dose independent rect. 15 14
960 68.68 radiation 40.0 30 < th dose dependent sin 12 NA
966 68.71 radiation 20.0 30 < th dose dependent sin 11 NA
970 68.72 atmosphere 995.0 90 > th dose independent rect. 17 12
977 68.75 temperature 10.0 720 > th dose independent rect. 17 10
978 68.75 radiation 30.0 720 < th dose independent rect. 17 10
990 68.84 wind 9.0 720 < th dose independent rect. 3 14
992 68.86 precipitation 0.1 720 < th dose independent rect. 19 13
994 68.86 precipitation 0.1 720 < th dose dependent rect. 19 13