BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0606200 Os02g0606200|AB001885
(271 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G06040.1 | chr1:1828662-1829659 REVERSE LENGTH=249 158 2e-39
AT2G31380.1 | chr2:13382150-13383302 FORWARD LENGTH=239 153 8e-38
AT1G78600.2 | chr1:29567370-29568662 FORWARD LENGTH=320 104 5e-23
AT4G39070.1 | chr4:18205061-18206421 REVERSE LENGTH=243 82 3e-16
AT1G75540.1 | chr1:28366059-28367398 FORWARD LENGTH=332 80 1e-15
AT4G10240.1 | chr4:6368967-6369526 REVERSE LENGTH=163 75 4e-14
AT2G21320.1 | chr2:9126502-9127652 FORWARD LENGTH=173 55 5e-08
AT4G38960.3 | chr4:18161576-18163045 FORWARD LENGTH=227 54 9e-08
AT2G24790.1 | chr2:10566959-10567946 FORWARD LENGTH=295 51 8e-07
AT5G15850.1 | chr5:5176297-5177473 REVERSE LENGTH=356 50 2e-06
AT5G24930.1 | chr5:8589325-8590949 FORWARD LENGTH=407 49 2e-06
>AT1G06040.1 | chr1:1828662-1829659 REVERSE LENGTH=249
Length = 248
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 124/243 (51%), Gaps = 29/243 (11%)
Query: 32 VHAANKLAGKHQRLPLEALSARLPRCDVCQEKAAFIFCVEDRALFCRDCDEPIHVPGTLS 91
+HAANKLA KHQRL L +LS + PRCD+CQEKAAFIFCVEDRAL CRDCDE IHV + S
Sbjct: 32 IHAANKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRS 91
Query: 92 GNHQRYLATGIRVGFASASPCXXXXXXXXXXXXXXXMGSSEHHHHHQQPAPTVAVDTPSP 151
NHQR+LATGI+V S S+ +Q PA + + P
Sbjct: 92 ANHQRFLATGIKVALTST-------ICSKEIEKNQPEPSNNQQKANQIPAKSTSQQQQQP 144
Query: 152 QF-LPQGWAVDELLQFSDYETGDKLQKESSPPLGFQELEWFADIDLFHNQAPKGGAAAGR 210
P WAVD+ FSD E+ D K+ LG EL+WF+D+ F +Q A
Sbjct: 145 SSATPLPWAVDDFFHFSDIESTD---KKGQLDLGAGELDWFSDMGFFGDQINDKALPA-- 199
Query: 211 TTAEVPELFASQAANDVXXXXXXXXXXXXXXXXXXGFRQSKKARVE--LPDDEEDYLIVP 268
AEVPEL S + KK R E DD+E++ IVP
Sbjct: 200 --AEVPELSVSHLGH------------VHSYKPMKSNVSHKKPRFETRYDDDDEEHFIVP 245
Query: 269 DLG 271
DLG
Sbjct: 246 DLG 248
>AT2G31380.1 | chr2:13382150-13383302 FORWARD LENGTH=239
Length = 238
Score = 153 bits (387), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 127/249 (51%), Gaps = 51/249 (20%)
Query: 32 VHAANKLAGKHQRLPLEALSARLPRCDVCQEKAAFIFCVEDRALFCRDCDEPIHVPGTLS 91
VHAANKLA KHQRL L++LS + P CD+C EKAAFIFCVEDRAL CRDCDE H P T S
Sbjct: 32 VHAANKLASKHQRLFLDSLSTKFPPCDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRS 91
Query: 92 GNHQRYLATGIRVGFASASPCXXXXXXXXXXXXXXXMGSSEHHHHHQQPA--------PT 143
NHQR+LATGIRV +S S + E +H P+ PT
Sbjct: 92 ANHQRFLATGIRVALSSTS------------------CNQEVEKNHFDPSNQQSLSKPPT 133
Query: 144 VAVDTPSPQFLPQGWAVDELLQFSDYETGDKLQKESSPPLGFQELEWFADIDLFHNQAPK 203
PSP WA DE +SD + +K +++ L EL+W A++ LF +Q +
Sbjct: 134 QQPAAPSPL-----WATDEFFSYSDLDCSNKEKEQ----LDLGELDWLAEMGLFGDQPDQ 184
Query: 204 GGAAAGRTTAEVPELFASQAANDVXXXXXXXXXXXXXXXXXXGFRQSKKARVELP-DDEE 262
AEVPEL S A+ +KK R+E DDEE
Sbjct: 185 EALP----VAEVPELSFSHLAH-----------AHSYNRPMKSNVPNKKQRLEYRYDDEE 229
Query: 263 DYLIVPDLG 271
++ +VPDLG
Sbjct: 230 EHFLVPDLG 238
>AT1G78600.2 | chr1:29567370-29568662 FORWARD LENGTH=320
Length = 319
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 56/77 (72%)
Query: 32 VHAANKLAGKHQRLPLEALSARLPRCDVCQEKAAFIFCVEDRALFCRDCDEPIHVPGTLS 91
+HAANKLAGKHQR+PL A ++ +P+CD+CQE + F FC++DRAL CR CD IH
Sbjct: 32 IHAANKLAGKHQRVPLSASASSIPKCDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHV 91
Query: 92 GNHQRYLATGIRVGFAS 108
HQR+L TGI+VG S
Sbjct: 92 SAHQRFLLTGIKVGLES 108
>AT4G39070.1 | chr4:18205061-18206421 REVERSE LENGTH=243
Length = 242
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 32 VHAANKLAGKHQRLPLEALSAR-LPRCDVCQEKAAFIFCVEDRALFCRDCDEPIHVPGTL 90
VH ANKLAGKH R L + + + P CD+C E+ A +FC EDRA+ CR+CD PIH
Sbjct: 32 VHFANKLAGKHLRFSLTSPTFKDAPLCDICGERRALLFCQEDRAILCRECDIPIHQANEH 91
Query: 91 SGNHQRYLATGIRVGFASASP 111
+ H R+L TG+++ SASP
Sbjct: 92 TKKHNRFLLTGVKI---SASP 109
>AT1G75540.1 | chr1:28366059-28367398 FORWARD LENGTH=332
Length = 331
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 32 VHAANKLAGKHQRLPL---EALSARLPRCDVCQEKAAFIFCVEDRALFCRDCDEPIHVPG 88
VH ANKLA KH R L + + P CD+CQ+K A +FC +DRA+ C+DCD IH
Sbjct: 32 VHHANKLASKHLRFSLLYPSSSNTSSPLCDICQDKKALLFCQQDRAILCKDCDSSIHAAN 91
Query: 89 TLSGNHQRYLATGIRVGFASA 109
+ H R+L TG+++ S+
Sbjct: 92 EHTKKHDRFLLTGVKLSATSS 112
>AT4G10240.1 | chr4:6368967-6369526 REVERSE LENGTH=163
Length = 162
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 10/80 (12%)
Query: 32 VHAANKLAGKHQRLPLE------ALSARLPRCDVCQEKAAFIFCVEDRALFCRDCDEPIH 85
VH ANKL +H R+ L+ ++ P CD+CQE+ + FC+EDRA+ C DCDE IH
Sbjct: 32 VHEANKLFQRHHRVALQKDAASATTASGAPLCDICQERKGYFFCLEDRAMLCNDCDEAIH 91
Query: 86 VPGTLSGNHQRYLATGIRVG 105
+ HQR+L +G++V
Sbjct: 92 TCNS----HQRFLLSGVQVS 107
>AT2G21320.1 | chr2:9126502-9127652 FORWARD LENGTH=173
Length = 172
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 32 VHAANKLAGKHQRLPLEALSARLPRCDVCQEKAAFIFCVEDRALFCRDCDEPIHVPGTLS 91
VH NKLA +H R+ L A + P CD+C+ AF +C D + C CD +HV G +
Sbjct: 32 VHKCNKLASRHLRVGL-ADPSNAPSCDICENAPAFFYCEIDGSSLCLQCDMVVHVGGKRT 90
Query: 92 GNHQRYLATGIRVGFASASP 111
H+R+L R+ F P
Sbjct: 91 --HRRFLLLRQRIEFPGDKP 108
>AT4G38960.3 | chr4:18161576-18163045 FORWARD LENGTH=227
Length = 226
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 32 VHAANKLAGKHQRLPLEALSARLPRCDVCQEKAAFIFCVEDRALFCRDCDEPIHVPGTLS 91
VH NKLA +H R+ L A + P CD+C+ AF +C D + C CD +HV G +
Sbjct: 75 VHMCNKLASRHVRVGL-AEPSNAPCCDICENAPAFFYCEIDGSSLCLQCDMVVHVGGKRT 133
Query: 92 GNHQRYLATGIRVGFASASP 111
H R+L R+ F P
Sbjct: 134 --HGRFLLLRQRIEFPGDKP 151
>AT2G24790.1 | chr2:10566959-10567946 FORWARD LENGTH=295
Length = 294
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 32 VHAANKLAGKHQRLPLEALSARLPRCDVCQEKAAFIFCVEDRALFCRDCDEPIHVPGTLS 91
+H ANKLA +H+R+ L C+VC++ A + C D A C CD IH LS
Sbjct: 35 IHTANKLASRHERVWL---------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLS 85
Query: 92 GNHQR 96
H+R
Sbjct: 86 RRHER 90
>AT5G15850.1 | chr5:5176297-5177473 REVERSE LENGTH=356
Length = 355
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 32 VHAANKLAGKHQRLPLEALSARLPRCDVCQEKAAFIFCVEDRALFCRDCDEPIHVPGTLS 91
VHAAN+LA +H+R+ + C C+ A FC D A C CD IH L+
Sbjct: 39 VHAANRLASRHERVRV---------CQSCERAPAAFFCKADAASLCTTCDSEIHSANPLA 89
Query: 92 GNHQR 96
HQR
Sbjct: 90 RRHQR 94
>AT5G24930.1 | chr5:8589325-8590949 FORWARD LENGTH=407
Length = 406
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 32 VHAANKLAGKHQRLPLEALSARLPRCDVCQEKAAFIFCVEDRALFCRDCDEPIHVPGTLS 91
VHAANKLA +H R+ + C+VC++ A + C D A C CD IH L+
Sbjct: 77 VHAANKLASRHARVWM---------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLA 127
Query: 92 GNHQRYLAT 100
H+R T
Sbjct: 128 RRHERVPVT 136
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,713,602
Number of extensions: 175087
Number of successful extensions: 790
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 778
Number of HSP's successfully gapped: 11
Length of query: 271
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 174
Effective length of database: 8,447,217
Effective search space: 1469815758
Effective search space used: 1469815758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)