BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0606200 Os02g0606200|AB001885
(271 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0606200 Zinc finger, B-box domain containing protein 394 e-110
Os04g0493000 Zinc finger, B-box domain containing protein 238 2e-63
Os06g0152200 Zinc-finger protein R2931 99 3e-21
Os02g0646200 Zinc finger, B-box domain containing protein 90 2e-18
Os04g0540200 Zinc finger, B-box domain containing protein 87 2e-17
Os06g0713000 Zinc finger, B-box domain containing protein 83 2e-16
Os01g0202500 Zinc finger, B-box domain containing protein 78 8e-15
Os12g0209200 Similar to CONSTANS-LIKE a 75 6e-14
Os05g0204600 Zinc finger, B-box domain containing protein 74 9e-14
>Os02g0606200 Zinc finger, B-box domain containing protein
Length = 271
Score = 394 bits (1013), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/240 (86%), Positives = 207/240 (86%)
Query: 32 VHAANKLAGKHQRLPLEALSARLPRCDVCQEKAAFIFCVEDRALFCRDCDEPIHVPGTLS 91
VHAANKLAGKHQRLPLEALSARLPRCDVCQEKAAFIFCVEDRALFCRDCDEPIHVPGTLS
Sbjct: 32 VHAANKLAGKHQRLPLEALSARLPRCDVCQEKAAFIFCVEDRALFCRDCDEPIHVPGTLS 91
Query: 92 GNHQRYLATGIRVGFASASPCXXXXXXXXXXXXXXXMGSSEHHHHHQQPAPTVAVDTPSP 151
GNHQRYLATGIRVGFASASPC MGSSEHHHHHQQPAPTVAVDTPSP
Sbjct: 92 GNHQRYLATGIRVGFASASPCDGGSDAHDSDHHAPPMGSSEHHHHHQQPAPTVAVDTPSP 151
Query: 152 QFLPQGWAVDELLQFSDYETGDKLQKESSPPLGFQELEWFADIDLFHNQAPKGGAAAGRT 211
QFLPQGWAVDELLQFSDYETGDKLQKESSPPLGFQELEWFADIDLFHNQAPKGGAAAGRT
Sbjct: 152 QFLPQGWAVDELLQFSDYETGDKLQKESSPPLGFQELEWFADIDLFHNQAPKGGAAAGRT 211
Query: 212 TAEVPELFASQAANDVXXXXXXXXXXXXXXXXXXGFRQSKKARVELPDDEEDYLIVPDLG 271
TAEVPELFASQAANDV GFRQSKKARVELPDDEEDYLIVPDLG
Sbjct: 212 TAEVPELFASQAANDVAYYRPPTRTAAAAFTAATGFRQSKKARVELPDDEEDYLIVPDLG 271
>Os04g0493000 Zinc finger, B-box domain containing protein
Length = 257
Score = 238 bits (608), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 137/251 (54%), Positives = 154/251 (61%), Gaps = 36/251 (14%)
Query: 32 VHAANKLAGKHQRLPLEA-LSARLPRCDVCQEKAAFIFCVEDRALFCRDCDEPIHVPGTL 90
+HAANKLA KHQRLPL+A L A LPRCDVCQEKAAFIFCVEDRALFCRDCDEPIHVPGTL
Sbjct: 32 IHAANKLASKHQRLPLDAALPAALPRCDVCQEKAAFIFCVEDRALFCRDCDEPIHVPGTL 91
Query: 91 SGNHQRYLATGIRVGFASAS---------PCXXXXXXXXXXXXXXXMGSSEHHHHHQQPA 141
SGNHQRYL TGIRVGF+S P Q
Sbjct: 92 SGNHQRYLTTGIRVGFSSVCSANADHLPPPAPKGNSKPPASGIAAAAAPKPAVSAAAQEV 151
Query: 142 PTVAVDTPSPQFLPQGWAVDELLQFSDYETGDKLQKESSPPLGFQELEWFADIDLFHNQA 201
P+ SP P GWAV++LLQ SDYE+ DK P+GF++LEW DIDLFH Q+
Sbjct: 152 PS------SPFLPPSGWAVEDLLQLSDYESSDK----KGSPIGFKDLEWLDDIDLFHVQS 201
Query: 202 PKGGAAAGRTTAEVPELFAS-QAANDVXXXXXXXXXXXXXXXXXXGFRQSKKARVELPDD 260
P G G T AEVPELFAS Q A+++ G RQSKK RVE+PDD
Sbjct: 202 PAKG---GSTAAEVPELFASPQPASNM------------GLYKASGARQSKKPRVEIPDD 246
Query: 261 EEDYLIVPDLG 271
+ED+ IVPDLG
Sbjct: 247 DEDFFIVPDLG 257
>Os06g0152200 Zinc-finger protein R2931
Length = 360
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 58/89 (65%), Gaps = 9/89 (10%)
Query: 32 VHAANKLAGKHQRLPL---------EALSARLPRCDVCQEKAAFIFCVEDRALFCRDCDE 82
VHAANKLAGKHQR+PL A + +P+CD+CQE + + FC+EDRAL CRDCD
Sbjct: 32 VHAANKLAGKHQRVPLLSDDGGAAPAAAAPAVPKCDICQEASGYFFCLEDRALLCRDCDV 91
Query: 83 PIHVPGTLSGNHQRYLATGIRVGFASASP 111
IH + HQR+L TG++VG A P
Sbjct: 92 SIHTVNSFVSVHQRFLLTGVQVGLDPADP 120
>Os02g0646200 Zinc finger, B-box domain containing protein
Length = 269
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 50/81 (61%), Gaps = 8/81 (9%)
Query: 32 VHAANKLAGKHQRLPL--------EALSARLPRCDVCQEKAAFIFCVEDRALFCRDCDEP 83
VH ANKLAGKH+R L S P CD+CQEK F+FC EDRA+ CR+CD P
Sbjct: 32 VHRANKLAGKHRRFSLLNPSASGRSPTSTTAPLCDICQEKRGFLFCKEDRAILCRECDVP 91
Query: 84 IHVPGTLSGNHQRYLATGIRV 104
+H L+ H RYL TG+R+
Sbjct: 92 VHTASELTMRHSRYLLTGVRL 112
>Os04g0540200 Zinc finger, B-box domain containing protein
Length = 250
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 55/82 (67%), Gaps = 6/82 (7%)
Query: 32 VHAANKLAGKHQRL----PLEALSA--RLPRCDVCQEKAAFIFCVEDRALFCRDCDEPIH 85
VH+ANKLAGKH+R PL + S+ + P CD+CQEK F+FC EDRA+ CR+CD +H
Sbjct: 32 VHSANKLAGKHRRFSLLQPLASSSSAQKPPLCDICQEKRGFLFCKEDRAILCRECDVTVH 91
Query: 86 VPGTLSGNHQRYLATGIRVGFA 107
L+ H R+L TG+R+ A
Sbjct: 92 TTSELTRRHGRFLLTGVRLSSA 113
>Os06g0713000 Zinc finger, B-box domain containing protein
Length = 308
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 53/86 (61%), Gaps = 9/86 (10%)
Query: 32 VHAANKLAGKHQRLPL---------EALSARLPRCDVCQEKAAFIFCVEDRALFCRDCDE 82
VH AN+LA KH+RLPL + +A P CDVC+EK +FCVEDRA+ C DCDE
Sbjct: 32 VHRANRLASKHRRLPLVHPSSSSSGDGGAAAAPLCDVCREKRGLVFCVEDRAILCADCDE 91
Query: 83 PIHVPGTLSGNHQRYLATGIRVGFAS 108
PIH L+ H R+L G ++ A+
Sbjct: 92 PIHSANDLTAKHTRFLLVGAKLSPAA 117
>Os01g0202500 Zinc finger, B-box domain containing protein
Length = 357
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 51/80 (63%), Gaps = 5/80 (6%)
Query: 32 VHAANKLAGKHQRLPLEALSARLP-----RCDVCQEKAAFIFCVEDRALFCRDCDEPIHV 86
VHAAN+LAGKH RLPL + S+ CD+CQ+ A+ FCVEDRAL CR CD +H
Sbjct: 32 VHAANRLAGKHHRLPLLSSSSSSSSPSPPTCDICQDAHAYFFCVEDRALLCRACDVAVHT 91
Query: 87 PGTLSGNHQRYLATGIRVGF 106
L H+R+L TG+ VG
Sbjct: 92 ANALVSAHRRFLLTGVHVGL 111
>Os12g0209200 Similar to CONSTANS-LIKE a
Length = 210
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 9/83 (10%)
Query: 32 VHAANKLAGKHQRLPLEALSARL---------PRCDVCQEKAAFIFCVEDRALFCRDCDE 82
VH+AN+LAGKH R+ L S+ P CD+CQEK + FC+EDRAL CR CD
Sbjct: 32 VHSANRLAGKHTRVALLLPSSSSAAAGDDDHHPTCDICQEKTGYFFCLEDRALLCRSCDV 91
Query: 83 PIHVPGTLSGNHQRYLATGIRVG 105
+H + H+R+L TG+R+G
Sbjct: 92 AVHTATAHAAAHRRFLITGVRIG 114
>Os05g0204600 Zinc finger, B-box domain containing protein
Length = 378
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 14/88 (15%)
Query: 32 VHAANKLAGKHQRLPLEALSARLP--------------RCDVCQEKAAFIFCVEDRALFC 77
+HAAN+LAGKH RLPL + ++ +CD+CQE A+ FC+EDRAL C
Sbjct: 68 IHAANRLAGKHLRLPLLSPASSSSSSAAALAPPPPSPPKCDICQESHAYFFCLEDRALLC 127
Query: 78 RDCDEPIHVPGTLSGNHQRYLATGIRVG 105
R CD +H H+R+L TG++VG
Sbjct: 128 RSCDVAVHTANAFVSAHRRFLLTGVQVG 155
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,867,310
Number of extensions: 305270
Number of successful extensions: 1414
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1399
Number of HSP's successfully gapped: 9
Length of query: 271
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 172
Effective length of database: 11,866,615
Effective search space: 2041057780
Effective search space used: 2041057780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)