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Os12g0209200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to CONSTANS-LIKE a.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0325) R2 : 0.729
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.44 (0.0901) R2dC : 0.176 R2C : 0.318
β3 : -2.07 (0.0982) R2dE : 0.3 R2E : 0.458
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.709 (0.0685) R2dN8 : 0.0839 R2N8 : 0.097
σ : 0.609
deviance : 170.79
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_____
C
peak time of C : 17.3
E
wheather : radiation
threshold : 0.7901
memory length : 89
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 1.38
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
164.64 0.603 11 -0.363 1.47 -2.08 -0.926 -0.779 -0.756 17.1 0.8 89 1.15 --
165.95 0.6 11 -0.359 1.45 -2.11 -0.795 -- -0.75 17 0.7901 89 1.16 --
166.72 0.601 11 -0.365 1.46 -2.09 -- -0.575 -0.755 17.2 0.8696 89 1.27 --
167.42 0.603 11 -0.345 1.45 -2.1 -- -- -0.739 17.3 0.7925 89 1.39 --
248.58 0.734 11 -0.386 -- -2.74 -- -0.18 -0.761 -- 0.8 66 2.12 --
229.52 0.71 11.1 -0.352 2.5 -- -0.151 -- -0.895 19.4 -- -- -- --
229.58 0.71 11.1 -0.349 2.5 -- -- -- -0.895 19.4 -- -- -- --
248.44 0.734 11 -0.388 -- -2.72 -- -- -0.761 -- 0.7972 66 2 --
170.79 0.609 11 -- 1.44 -2.07 -- -- -0.709 17.3 0.7901 89 1.38 --
562.7 1.11 11 -0.39 -- -- -- -- -0.936 -- -- -- -- --
232.79 0.714 11.1 -- 2.51 -- -- -- -0.856 19.4 -- -- -- --
252.57 0.74 11 -- -- -2.73 -- -- -0.741 -- 0.8 66 1.99 --
566.71 1.11 11 -- -- -- -- -- -0.893 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 162.58 precipitation 0.1 270 < th dose independent rect. 3 7
2 162.58 precipitation 0.1 270 < th dose dependent rect. 3 7
3 163.57 temperature 15.0 270 > th dose independent rect. 3 7
4 163.62 humidity 60.0 270 > th dose independent rect. 3 8
7 165.02 wind 7.0 270 < th dose independent rect. 3 7
11 165.38 atmosphere 995.0 270 > th dose independent rect. 3 7
12 165.38 atmosphere 1015.0 270 < th dose independent rect. 3 7
13 165.38 temperature 10.0 270 > th dose independent rect. 10 17
14 165.41 radiation 40.0 270 < th dose independent rect. 3 7
15 165.63 radiation 1.0 90 > th dose independent sin 7 NA
16 165.71 radiation 1.0 90 < th dose independent sin 8 NA
17 165.76 radiation 1.0 90 > th dose independent rect. 4 7
31 166.08 radiation 1.0 90 < th dose dependent sin 7 NA
32 166.22 wind 9.0 270 < th dose independent rect. 10 17
33 166.24 temperature 30.0 270 < th dose independent rect. 3 7
36 167.23 radiation 40.0 270 < th dose independent rect. 16 17
37 167.58 precipitation 0.1 270 < th dose independent rect. 16 17
38 167.58 precipitation 0.1 270 < th dose dependent rect. 16 17
39 167.62 radiation 40.0 270 < th dose dependent rect. 16 17
41 167.66 precipitation 0.1 270 < th dose independent rect. 10 17
42 167.66 precipitation 0.1 270 < th dose dependent rect. 10 17
45 167.71 humidity 50.0 270 > th dose independent rect. 16 17
50 168.24 temperature 15.0 270 > th dose independent rect. 5 16
61 168.83 radiation 1.0 270 < th dose dependent rect. 21 14
62 168.84 radiation 1.0 90 < th dose independent rect. 23 12
63 168.89 temperature 10.0 270 > th dose independent rect. 9 7
64 168.89 atmosphere 1015.0 270 < th dose independent rect. 9 7
65 168.89 radiation 1.0 90 < th dose independent rect. 23 9
66 168.89 temperature 10.0 270 > th dose independent rect. 16 17
68 168.90 wind 9.0 270 < th dose independent rect. 16 17
73 169.30 atmosphere 995.0 270 > th dose independent rect. 16 17
75 169.39 precipitation 0.1 270 < th dose independent rect. 9 7
76 169.39 precipitation 0.1 270 < th dose dependent rect. 9 7
86 169.91 wind 9.0 270 < th dose independent rect. 9 7
87 169.94 wind 1.0 270 > th dose independent rect. 9 7
89 169.99 humidity 50.0 270 > th dose dependent rect. 4 6
91 170.31 radiation 1.0 90 < th dose dependent rect. 23 12
92 170.35 radiation 1.0 90 < th dose dependent rect. 23 9
107 170.83 precipitation 0.1 270 < th dose independent rect. 4 17
108 170.83 precipitation 0.1 270 < th dose dependent rect. 4 17
111 170.93 radiation 1.0 270 > th dose independent rect. 9 7
114 170.99 radiation 1.0 270 < th dose dependent rect. 21 8
115 171.01 radiation 1.0 270 < th dose dependent sin 11 NA
127 171.57 temperature 10.0 270 > th dose independent rect. 21 7
128 171.57 temperature 30.0 270 < th dose independent rect. 21 7
129 171.57 humidity 50.0 270 > th dose independent rect. 21 7
132 171.57 atmosphere 995.0 270 > th dose independent rect. 21 7
133 171.57 radiation 1.0 270 < th dose independent rect. 21 7
144 171.59 atmosphere 1015.0 270 < th dose independent rect. 4 17
145 171.62 wind 9.0 270 < th dose independent rect. 21 7
148 171.67 radiation 40.0 270 < th dose independent rect. 14 9
154 171.76 wind 1.0 270 > th dose independent rect. 15 8
180 172.10 wind 9.0 270 < th dose independent rect. 4 17
188 172.42 atmosphere 995.0 270 > th dose independent rect. 9 7
216 173.13 humidity 50.0 270 > th dose dependent rect. 21 7
257 173.93 wind 9.0 270 < th dose dependent rect. 3 7
263 174.01 atmosphere 995.0 270 > th dose independent rect. 4 17
265 174.12 temperature 30.0 270 < th dose independent rect. 16 17
272 174.19 precipitation 0.1 270 < th dose independent rect. 21 7
273 174.19 precipitation 0.1 270 < th dose dependent rect. 21 7
284 174.33 radiation 40.0 270 < th dose independent rect. 4 17
302 174.64 temperature 10.0 270 > th dose independent rect. 15 8
303 174.64 temperature 10.0 270 > th dose independent rect. 23 16
304 174.64 precipitation 0.1 270 < th dose independent rect. 15 19
305 174.64 precipitation 0.1 270 < th dose dependent rect. 15 19
310 174.66 atmosphere 995.0 270 > th dose independent rect. 23 15
312 174.70 radiation 1.0 90 > th dose independent rect. 11 8
336 175.08 radiation 1.0 270 < th dose independent rect. 21 14
341 175.15 radiation 1.0 90 < th dose independent rect. 21 11
349 175.32 atmosphere 995.0 270 > th dose dependent rect. 10 5
358 175.55 humidity 50.0 270 > th dose independent rect. 4 16
359 175.58 wind 9.0 270 < th dose independent rect. 15 8
367 175.68 wind 1.0 270 > th dose independent rect. 10 5
368 175.69 temperature 10.0 270 > th dose independent rect. 10 5
369 175.69 atmosphere 1015.0 270 < th dose independent rect. 10 5
371 175.69 temperature 10.0 270 > th dose independent rect. 15 19
375 175.73 wind 9.0 270 < th dose independent rect. 15 19
397 175.93 precipitation 0.1 270 < th dose independent rect. 10 5
398 175.93 precipitation 0.1 270 < th dose dependent rect. 10 5
406 176.14 precipitation 0.1 270 < th dose independent rect. 15 8
407 176.14 precipitation 0.1 270 < th dose dependent rect. 15 8
413 176.21 atmosphere 995.0 270 > th dose independent rect. 15 19
432 176.36 wind 9.0 270 < th dose independent rect. 23 16
441 176.48 wind 9.0 270 < th dose independent rect. 10 5
446 176.52 radiation 40.0 270 < th dose dependent rect. 5 4
454 176.62 atmosphere 1015.0 270 < th dose independent rect. 16 17
464 176.70 wind 9.0 270 < th dose dependent rect. 21 7
468 176.76 atmosphere 995.0 270 > th dose independent rect. 10 5
469 176.77 temperature 10.0 270 > th dose dependent rect. 3 7
477 176.87 atmosphere 995.0 270 > th dose independent rect. 10 17
484 176.97 radiation 1.0 270 < th dose independent sin 11 NA
486 177.01 atmosphere 995.0 270 > th dose independent rect. 15 8
502 177.23 atmosphere 1015.0 270 < th dose independent rect. 15 8
509 177.28 radiation 40.0 270 < th dose dependent rect. 4 6
550 177.74 humidity 70.0 270 > th dose independent rect. 4 16
559 177.84 atmosphere 1015.0 270 < th dose independent rect. 23 16
585 178.20 precipitation 0.1 270 < th dose independent rect. 23 16
586 178.20 precipitation 0.1 270 < th dose dependent rect. 23 16
669 178.94 humidity 50.0 270 > th dose dependent rect. 4 16
699 179.14 radiation 1.0 270 > th dose independent sin 11 NA
795 180.32 humidity 50.0 270 > th dose independent rect. 14 9
797 180.37 temperature 10.0 90 > th dose dependent rect. 5 6
844 180.84 humidity 50.0 270 > th dose independent rect. 15 7
846 180.84 radiation 40.0 270 < th dose dependent rect. 4 17
850 180.92 humidity 50.0 270 > th dose independent rect. 23 15
864 181.03 radiation 40.0 270 < th dose dependent rect. 14 8
865 181.06 wind 1.0 270 > th dose independent rect. 16 16
875 181.15 atmosphere 1015.0 270 < th dose independent rect. 21 7
911 181.40 atmosphere 1015.0 270 < th dose independent rect. 10 17
943 181.69 humidity 50.0 270 > th dose independent rect. 10 5
983 182.01 humidity 50.0 270 > th dose independent rect. 9 7
997 182.16 wind 1.0 90 > th dose independent rect. 5 6