Os06g0152200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc-finger protein R2931.
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Os06g0152200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc-finger protein R2931.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.75 | 0.203 | 12.3 | -0.346 | 0.279 | 0.501 | 0.0624 | -0.666 | 0.0313 | 18.1 | 21.5 | 1853 | -- | -- |
| 19.68 | 0.207 | 12.3 | -0.162 | 0.28 | 0.55 | 0.0129 | -- | 0.0757 | 18.1 | 21.48 | 1769 | -- | -- |
| 18.15 | 0.198 | 12.3 | -0.359 | 0.292 | 0.476 | -- | -0.814 | 0.0178 | 18.1 | 22.3 | 1510 | -- | -- |
| 19.69 | 0.207 | 12.3 | -0.163 | 0.282 | 0.551 | -- | -- | 0.0761 | 18.1 | 21.46 | 1769 | -- | -- |
| 22.44 | 0.221 | 12.3 | -0.39 | -- | 0.477 | -- | -0.822 | -0.00845 | -- | 22.3 | 1871 | -- | -- |
| 28.5 | 0.25 | 12.2 | 0.083 | 0.292 | -- | 0.0635 | -- | 0.236 | 18.2 | -- | -- | -- | -- |
| 28.51 | 0.25 | 12.2 | 0.0824 | 0.292 | -- | -- | -- | 0.237 | 18.2 | -- | -- | -- | -- |
| 23.71 | 0.227 | 12.3 | -0.179 | -- | 0.563 | -- | -- | 0.065 | -- | 21.4 | 1856 | -- | -- |
| 20.08 | 0.209 | 12.2 | -- | 0.3 | 0.463 | -- | -- | 0.107 | 18.1 | 22.2 | 1641 | -- | -- |
| 32.94 | 0.268 | 12.2 | 0.0743 | -- | -- | -- | -- | 0.23 | -- | -- | -- | -- | -- |
| 28.69 | 0.251 | 12.2 | -- | 0.291 | -- | -- | -- | 0.227 | 18.2 | -- | -- | -- | -- |
| 24.36 | 0.23 | 12.2 | -- | -- | 0.459 | -- | -- | 0.0829 | -- | 22.26 | 1882 | -- | -- |
| 33.08 | 0.268 | 12.2 | -- | -- | -- | -- | -- | 0.222 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 4 |
| 3 | 18.66 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 7 | 18.67 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 8 | 18.68 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 9 | 18.68 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 11 | 18.68 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 4 |
| 13 | 18.68 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 32 | 18.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 51 | 18.76 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 112 | 18.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 10 |
| 168 | 18.92 | humidity | 90 | 14400 | > th | dose dependent | sin | 11 | NA |
| 214 | 18.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 15 |
| 216 | 18.98 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 233 | 18.99 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 247 | 19.00 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 266 | 19.01 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 290 | 19.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 11 |
| 343 | 19.07 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 359 | 19.08 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 425 | 19.12 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 460 | 19.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 463 | 19.14 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 512 | 19.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 526 | 19.18 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 542 | 19.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 577 | 19.21 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 588 | 19.22 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 603 | 19.22 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 7 |
| 642 | 19.25 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 664 | 19.26 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 774 | 19.32 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 821 | 19.36 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 862 | 19.38 | humidity | 80 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 863 | 19.38 | humidity | 80 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 876 | 19.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 877 | 19.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 938 | 19.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |