BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0152200 Os06g0152200|AK072231
(360 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0152200 Zinc-finger protein R2931 674 0.0
Os01g0202500 Zinc finger, B-box domain containing protein 202 4e-52
Os05g0204600 Zinc finger, B-box domain containing protein 197 8e-51
Os04g0540200 Zinc finger, B-box domain containing protein 137 1e-32
Os02g0646200 Zinc finger, B-box domain containing protein 135 5e-32
Os12g0209200 Similar to CONSTANS-LIKE a 134 1e-31
Os02g0606200 Zinc finger, B-box domain containing protein 129 4e-30
Os06g0713000 Zinc finger, B-box domain containing protein 129 4e-30
Os04g0493000 Zinc finger, B-box domain containing protein 123 2e-28
Os09g0527900 Similar to Hd1-like protein 84 2e-16
>Os06g0152200 Zinc-finger protein R2931
Length = 360
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/360 (91%), Positives = 328/360 (91%)
Query: 1 MKIQCNACGAAEARVLCCADEAALCTACDEEVHAANKLAGKHQRVPLLSDDGGXXXXXXX 60
MKIQCNACGAAEARVLCCADEAALCTACDEEVHAANKLAGKHQRVPLLSDDGG
Sbjct: 1 MKIQCNACGAAEARVLCCADEAALCTACDEEVHAANKLAGKHQRVPLLSDDGGAAPAAAA 60
Query: 61 XXVPKCDICQEASGYFFCLEDRALLCRDCDVSIHTVNSFVSVHQRFLLTGVQVGLXXXXX 120
VPKCDICQEASGYFFCLEDRALLCRDCDVSIHTVNSFVSVHQRFLLTGVQVGL
Sbjct: 61 PAVPKCDICQEASGYFFCLEDRALLCRDCDVSIHTVNSFVSVHQRFLLTGVQVGLDPADP 120
Query: 121 XXXXXXKHVKSAGGSVDSATKHLQRNPTDLSGENSASLPSQNVINGNYSRQSSVTMAKTG 180
KHVKSAGGSVDSATKHLQRNPTDLSGENSASLPSQNVINGNYSRQSSVTMAKTG
Sbjct: 121 VPPVADKHVKSAGGSVDSATKHLQRNPTDLSGENSASLPSQNVINGNYSRQSSVTMAKTG 180
Query: 181 QVNWTMSNNTIRSIDPPPKYXXXXXXXXXXXXHTSTMAAYSSQISKDSDRIYNLPFTGGN 240
QVNWTMSNNTIRSIDPPPKY HTSTMAAYSSQISKDSDRIYNLPFTGGN
Sbjct: 181 QVNWTMSNNTIRSIDPPPKYSSEESPALLLASHTSTMAAYSSQISKDSDRIYNLPFTGGN 240
Query: 241 GSDSLHDWHVDEFFSNSEFGFAEHGSSKGDNAKPGSAGGSPQCRLAEGLFVEGLLGQVPD 300
GSDSLHDWHVDEFFSNSEFGFAEHGSSKGDNAKPGSAGGSPQCRLAEGLFVEGLLGQVPD
Sbjct: 241 GSDSLHDWHVDEFFSNSEFGFAEHGSSKGDNAKPGSAGGSPQCRLAEGLFVEGLLGQVPD 300
Query: 301 NPWTVPEVPSPPTASGLYWQNNLLCPSYDSTMFVPEISSLENSQNNFTVSAGLKRRRRQF 360
NPWTVPEVPSPPTASGLYWQNNLLCPSYDSTMFVPEISSLENSQNNFTVSAGLKRRRRQF
Sbjct: 301 NPWTVPEVPSPPTASGLYWQNNLLCPSYDSTMFVPEISSLENSQNNFTVSAGLKRRRRQF 360
>Os01g0202500 Zinc finger, B-box domain containing protein
Length = 357
Score = 202 bits (513), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 149/386 (38%), Positives = 190/386 (49%), Gaps = 58/386 (15%)
Query: 1 MKIQCNACGAAEARVLCCADEAALCTACDEEVHAANKLAGKHQRVPLLSDDGGXXXXXXX 60
MK+ C+AC AAEARVLCCAD+AALC CD VHAAN+LAGKH R+PLLS
Sbjct: 1 MKVLCSACEAAEARVLCCADDAALCARCDLHVHAANRLAGKHHRLPLLS----SSSSSSS 56
Query: 61 XXVPKCDICQEASGYFFCLEDRALLCRDCDVSIHTVNSFVSVHQRFLLTGVQVGLXXXXX 120
P CDICQ+A YFFC+EDRALLCR CDV++HT N+ VS H+RFLLTGV VGL
Sbjct: 57 PSPPTCDICQDAHAYFFCVEDRALLCRACDVAVHTANALVSAHRRFLLTGVHVGLDAAAD 116
Query: 121 XXXXXXKHVKSAGGSVDSATKHLQRNPTDLSGENSASLPSQNVINGNYSRQSSVTMAKTG 180
H S+ ++A S S +VI+ + TG
Sbjct: 117 DDDKHPPHPLSSSLPRNTAPPPQPPPKRSPSPIYS----DDDVIDWATGGHD---IGITG 169
Query: 181 QV-NWTMSNNTIRSIDPPPKYXXXXXXXXXXXXHTSTMAAYSSQISKDSDRIYNLPFTGG 239
+ +W++ + + PP T+ AA G
Sbjct: 170 NLPDWSLVDEQFNTPALPPVVTKTPPKRASRGPVTAGTAAA----------------VFG 213
Query: 240 NGSDSLHDWHVDEFFS----NSEFGFAEHGSSKGDNAKPGS-------------AGGSPQ 282
N + DW ++EFF +S FGFAE+G+SK D+ K GS + S
Sbjct: 214 NLAGGSPDWPLNEFFGFADFSSGFGFAENGTSKADSGKIGSMDGSPNGGRSSSSSSSSSA 273
Query: 283 CRLAEGLFVEGLLGQVPDNPWTVPEVPSPPTASGLYWQNNLLCPSYD------STMFVPE 336
G + GQVP+ W VPE+PSPPTASGL+WQ + P Y S +FVP+
Sbjct: 274 AAAGGGGGGQDFFGQVPEVHWAVPELPSPPTASGLHWQRD---PRYGGGATDASAVFVPD 330
Query: 337 ISSLENSQNNFTVSAG----LKRRRR 358
ISS EN F +A +KRRRR
Sbjct: 331 ISSPENPFRCFAAAAAGDHTMKRRRR 356
>Os05g0204600 Zinc finger, B-box domain containing protein
Length = 378
Score = 197 bits (502), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 150/380 (39%), Positives = 189/380 (49%), Gaps = 59/380 (15%)
Query: 1 MKIQCNACGAAEARVLCCADEAALCTACDEEVHAANKLAGKHQRVPLLSDDGGXXXXXXX 60
MK+ C+AC AAEA VLCCADEAALC CD ++HAAN+LAGKH R+PLLS
Sbjct: 37 MKLLCSACEAAEASVLCCADEAALCARCDRDIHAANRLAGKHLRLPLLSPASSSSSSAAA 96
Query: 61 XXVP-----KCDICQEASGYFFCLEDRALLCRDCDVSIHTVNSFVSVHQRFLLTGVQVGL 115
P KCDICQE+ YFFCLEDRALLCR CDV++HT N+FVS H+RFLLTGVQVG
Sbjct: 97 LAPPPPSPPKCDICQESHAYFFCLEDRALLCRSCDVAVHTANAFVSAHRRFLLTGVQVGQ 156
Query: 116 XXXXXXXXXXXKHVKSAGGSVDSATKHLQRNPTDLSGENSASLPSQNVINGNYSRQSSVT 175
S + H P L GE G +S ++ +
Sbjct: 157 EQDEHSPDPPEPSPPPPPPPPASKSDH----PAPLYGEG----------GGGFSWDAADS 202
Query: 176 MAKTGQVNWTMSNNTIRSIDPPPKYXXXXXXXXXXXXHTSTMAAYSSQISKDSDRIYNLP 235
A G +W+ + S PPP+ HT T + +K S R P
Sbjct: 203 PAAGGLPDWSAVVDQFGS-PPPPR-------------HTDTATVTTPPPTKRSPRA---P 245
Query: 236 FTGGNGSDSLHDWHVDEFFSNSEFGFAEH-------GSSKGDNAK-PGSAGGSPQCRLA- 286
GG G + DW + EFF G+SK D+ K GS GSP R +
Sbjct: 246 AFGGQG--GMMDWPLGEFFGGFTDFTGGFGFGFGDSGTSKADSGKLGGSTDGSPYYRSSS 303
Query: 287 -EGLFVEGLLGQVPDNPWTVPEVPSPPTASGLYWQNNLLCPSY------DSTMFVPEISS 339
+ + L GQVP+ W+VPE+PSPPTASGL+WQ + D+T FVP+I S
Sbjct: 304 EDDRNADELFGQVPEIQWSVPELPSPPTASGLHWQRHPAATHGGGGGGPDTTAFVPDICS 363
Query: 340 LENSQNNFTVSAGLKRRRRQ 359
++ A +RRRQ
Sbjct: 364 PDS-----CFPATTSKRRRQ 378
>Os04g0540200 Zinc finger, B-box domain containing protein
Length = 250
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/113 (55%), Positives = 75/113 (66%), Gaps = 3/113 (2%)
Query: 1 MKIQCNACGAAEARVLCCADEAALCTACDEEVHAANKLAGKHQRVPLLSDDGGXXXXXXX 60
MK+QC+ C A A V CCADEAALC ACD VH+ANKLAGKH+R LL
Sbjct: 1 MKVQCDVCAAEAASVFCCADEAALCDACDRRVHSANKLAGKHRRFSLLQP---LASSSSA 57
Query: 61 XXVPKCDICQEASGYFFCLEDRALLCRDCDVSIHTVNSFVSVHQRFLLTGVQV 113
P CDICQE G+ FC EDRA+LCR+CDV++HT + H RFLLTGV++
Sbjct: 58 QKPPLCDICQEKRGFLFCKEDRAILCRECDVTVHTTSELTRRHGRFLLTGVRL 110
>Os02g0646200 Zinc finger, B-box domain containing protein
Length = 269
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 74/113 (65%), Gaps = 1/113 (0%)
Query: 1 MKIQCNACGAAEARVLCCADEAALCTACDEEVHAANKLAGKHQRVPLLSDDGGXXXXXXX 60
MK+QC+ C A A V CCADEAALC ACD VH ANKLAGKH+R LL +
Sbjct: 1 MKVQCDVCAAEAASVFCCADEAALCDACDHRVHRANKLAGKHRRFSLL-NPSASGRSPTS 59
Query: 61 XXVPKCDICQEASGYFFCLEDRALLCRDCDVSIHTVNSFVSVHQRFLLTGVQV 113
P CDICQE G+ FC EDRA+LCR+CDV +HT + H R+LLTGV++
Sbjct: 60 TTAPLCDICQEKRGFLFCKEDRAILCRECDVPVHTASELTMRHSRYLLTGVRL 112
>Os12g0209200 Similar to CONSTANS-LIKE a
Length = 210
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/114 (60%), Positives = 81/114 (71%)
Query: 1 MKIQCNACGAAEARVLCCADEAALCTACDEEVHAANKLAGKHQRVPLLSDDGGXXXXXXX 60
MKI C+AC AEA VLCCADEAALC CD VH+AN+LAGKH RV LL
Sbjct: 1 MKIGCDACEQAEAAVLCCADEAALCRRCDAAVHSANRLAGKHTRVALLLPSSSSAAAGDD 60
Query: 61 XXVPKCDICQEASGYFFCLEDRALLCRDCDVSIHTVNSFVSVHQRFLLTGVQVG 114
P CDICQE +GYFFCLEDRALLCR CDV++HT + + H+RFL+TGV++G
Sbjct: 61 DHHPTCDICQEKTGYFFCLEDRALLCRSCDVAVHTATAHAAAHRRFLITGVRIG 114
>Os02g0606200 Zinc finger, B-box domain containing protein
Length = 271
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 80/115 (69%), Gaps = 9/115 (7%)
Query: 1 MKIQCNACGAAEARVLCCADEAALCTACDEEVHAANKLAGKHQRVPLLSDDGGXXXXXXX 60
MKIQC+AC +A A V+CCADEAALC ACD EVHAANKLAGKHQR+PL
Sbjct: 1 MKIQCDACESAAAAVVCCADEAALCAACDVEVHAANKLAGKHQRLPL---------EALS 51
Query: 61 XXVPKCDICQEASGYFFCLEDRALLCRDCDVSIHTVNSFVSVHQRFLLTGVQVGL 115
+P+CD+CQE + + FC+EDRAL CRDCD IH + HQR+L TG++VG
Sbjct: 52 ARLPRCDVCQEKAAFIFCVEDRALFCRDCDEPIHVPGTLSGNHQRYLATGIRVGF 106
>Os06g0713000 Zinc finger, B-box domain containing protein
Length = 308
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 73/113 (64%)
Query: 1 MKIQCNACGAAEARVLCCADEAALCTACDEEVHAANKLAGKHQRVPLLSDDGGXXXXXXX 60
M++QC+ C A A VLCCADEAALC+ACD VH AN+LA KH+R+PL+
Sbjct: 1 MRVQCDVCAAEPAAVLCCADEAALCSACDRRVHRANRLASKHRRLPLVHPSSSSSGDGGA 60
Query: 61 XXVPKCDICQEASGYFFCLEDRALLCRDCDVSIHTVNSFVSVHQRFLLTGVQV 113
P CD+C+E G FC+EDRA+LC DCD IH+ N + H RFLL G ++
Sbjct: 61 AAAPLCDVCREKRGLVFCVEDRAILCADCDEPIHSANDLTAKHTRFLLVGAKL 113
>Os04g0493000 Zinc finger, B-box domain containing protein
Length = 257
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 78/115 (67%), Gaps = 8/115 (6%)
Query: 1 MKIQCNACGAAEARVLCCADEAALCTACDEEVHAANKLAGKHQRVPLLSDDGGXXXXXXX 60
M+IQC+AC AA A V+CCADEAALC CD E+HAANKLA KHQR+PL
Sbjct: 1 MRIQCDACEAAAATVVCCADEAALCARCDVEIHAANKLASKHQRLPL--------DAALP 52
Query: 61 XXVPKCDICQEASGYFFCLEDRALLCRDCDVSIHTVNSFVSVHQRFLLTGVQVGL 115
+P+CD+CQE + + FC+EDRAL CRDCD IH + HQR+L TG++VG
Sbjct: 53 AALPRCDVCQEKAAFIFCVEDRALFCRDCDEPIHVPGTLSGNHQRYLTTGIRVGF 107
>Os09g0527900 Similar to Hd1-like protein
Length = 211
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 62/113 (54%), Gaps = 12/113 (10%)
Query: 1 MKIQCNACGAAEARVLCCADEAALCTACDEEVHAANKLAGKHQRVPLLSDDGGXXXXXXX 60
M+ C+ C +A A + C ADEAALC +CDE+VH NKLA +H RV L +
Sbjct: 1 MRTICDVCESAPAVLFCVADEAALCRSCDEKVHMCNKLARRHVRVGLADPN--------- 51
Query: 61 XXVPKCDICQEASGYFFCLEDRALLCRDCDVSIHTVNSFVSVHQRFLLTGVQV 113
V +CDIC+ A +F+C D LC CD+++H H R+LL +V
Sbjct: 52 -KVQRCDICENAPAFFYCEIDGTSLCLSCDMTVHVGGK--RTHGRYLLLRQRV 101
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,915,985
Number of extensions: 532727
Number of successful extensions: 1468
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1435
Number of HSP's successfully gapped: 12
Length of query: 360
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 258
Effective length of database: 11,709,973
Effective search space: 3021173034
Effective search space used: 3021173034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)