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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0527900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Hd1-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.033) R2 : 0.941
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.38 (0.0866) R2dC : 0.2 R2C : 0.29
β3 : -6.54 (0.093) R2dE : 0.649 R2E : 0.725
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.565 (0.0695) R2dN8 : 0.011 R2N8 : 0.000229
σ : 0.619
deviance : 176.68
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_____
C
peak time of C : 6.95
E
wheather : temperature
threshold : 10.81
memory length : 181
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.4
open length of G : 7.38

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
169.63 0.612 12.2 0.689 3.52 -7.14 1.42 1.85 0.576 6.62 10.62 245 19.1 7.12
166.18 0.6 12.2 0.632 3.5 -6.82 1.42 -- 0.642 6.54 9.926 198 19.3 7.47
165.31 0.599 12.2 0.775 3.47 -6.95 -- 1.89 0.666 6.59 10.89 198 19.3 7.47
167.09 0.602 12.2 0.624 3.37 -6.68 -- -- 0.638 6.92 11.31 190 19.4 7.4
535.06 1.08 12.3 0.524 -- -7.52 -- 0.0677 0.697 -- 10.14 196 18.4 7.7
762.29 1.29 12.2 0.331 6.07 -- 0.701 -- 0.372 10.3 -- -- -- --
764.26 1.29 12.2 0.359 6.07 -- -- -- 0.374 10.3 -- -- -- --
532.91 1.08 12.3 0.668 -- -7.61 -- -- 0.709 -- 10.44 195 18.4 7.7
176.68 0.619 12.2 -- 3.38 -6.54 -- -- 0.565 6.95 10.81 181 19.4 7.38
3002.29 2.56 12.4 0.268 -- -- -- -- 0.358 -- -- -- -- --
767.67 1.3 12.2 -- 6.06 -- -- -- 0.333 10.3 -- -- -- --
538.76 1.08 12.3 -- -- -7.56 -- -- 0.586 -- 9.265 210 18.3 7.55
3004.18 2.56 12.4 -- -- -- -- -- 0.329 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 177.06 temperature 10.0 270 > th dose dependent rect. 19 7
15 259.93 temperature 20.0 270 > th dose independent rect. 19 7
78 355.38 atmosphere 1015.0 270 < th dose independent rect. 19 7
81 356.04 precipitation 0.1 270 < th dose independent rect. 6 9
82 356.04 precipitation 0.1 270 < th dose dependent rect. 6 9
84 356.78 temperature 10.0 270 > th dose independent rect. 6 9
85 356.78 atmosphere 1015.0 270 < th dose independent rect. 6 9
86 356.78 temperature 10.0 270 > th dose independent rect. 15 15
89 358.61 radiation 40.0 270 < th dose independent rect. 15 15
90 358.94 wind 9.0 270 < th dose independent rect. 6 9
96 360.92 atmosphere 995.0 270 > th dose independent rect. 6 9
99 361.51 precipitation 0.1 90 < th dose independent rect. 20 8
100 361.51 precipitation 0.1 90 < th dose dependent rect. 20 8
102 362.48 radiation 1.0 90 < th dose dependent rect. 20 8
104 362.50 temperature 30.0 90 < th dose independent rect. 20 8
105 362.50 humidity 50.0 90 > th dose independent rect. 20 8
108 362.50 atmosphere 995.0 90 > th dose independent rect. 20 8
109 362.50 radiation 1.0 90 < th dose independent rect. 20 8
114 362.50 temperature 10.0 90 > th dose independent rect. 4 16
115 362.50 atmosphere 1015.0 90 < th dose independent rect. 4 16
120 362.74 wind 9.0 90 < th dose independent rect. 20 8
124 363.85 wind 9.0 270 < th dose independent rect. 15 15
131 367.62 wind 9.0 90 < th dose independent rect. 4 16
132 367.79 precipitation 0.1 270 < th dose independent rect. 15 15
133 367.79 precipitation 0.1 270 < th dose dependent rect. 15 15
134 367.91 precipitation 0.1 90 < th dose independent rect. 4 16
135 367.91 precipitation 0.1 90 < th dose dependent rect. 4 16
148 368.94 temperature 10.0 270 > th dose independent rect. 2 17
149 368.94 atmosphere 1015.0 270 < th dose independent rect. 2 17
154 369.41 precipitation 0.1 270 < th dose independent rect. 2 17
155 369.41 precipitation 0.1 270 < th dose dependent rect. 2 17
175 375.44 wind 9.0 270 < th dose independent rect. 2 17
183 379.32 radiation 20.0 90 < th dose dependent rect. 4 16
185 379.51 atmosphere 995.0 270 > th dose independent rect. 15 15
193 383.75 temperature 20.0 270 > th dose independent rect. 7 18
224 388.15 atmosphere 995.0 270 > th dose independent rect. 2 17
225 388.25 atmosphere 995.0 90 > th dose independent rect. 4 16
242 390.28 atmosphere 1015.0 90 < th dose dependent rect. 20 7
245 390.81 radiation 1.0 270 > th dose independent rect. 6 9
280 395.18 radiation 10.0 90 < th dose independent rect. 4 16
287 397.25 humidity 50.0 90 > th dose dependent rect. 20 8
327 402.91 humidity 50.0 270 > th dose independent rect. 6 9
329 403.81 atmosphere 1015.0 270 < th dose independent rect. 7 18
337 405.15 temperature 10.0 1440 > th dose independent rect. 21 8
340 405.15 temperature 30.0 1440 < th dose independent rect. 21 8
344 405.15 humidity 50.0 1440 > th dose independent rect. 21 8
350 405.15 atmosphere 995.0 1440 > th dose independent rect. 21 8
351 405.15 radiation 20.0 1440 < th dose independent rect. 21 8
363 405.15 temperature 10.0 1440 > th dose independent rect. 5 16
422 411.07 atmosphere 1015.0 270 < th dose independent rect. 6 20
426 411.95 radiation 20.0 270 < th dose dependent rect. 2 5
471 413.10 wind 7.0 270 < th dose independent rect. 2 4
497 414.01 wind 9.0 90 < th dose dependent rect. 20 8
499 414.16 precipitation 0.1 270 < th dose independent rect. 2 4
500 414.16 precipitation 0.1 270 < th dose dependent rect. 2 4
504 414.71 radiation 10.0 270 < th dose independent rect. 2 4
510 415.05 temperature 10.0 270 > th dose independent rect. 2 4
512 415.05 temperature 30.0 270 < th dose independent rect. 2 4
513 415.05 humidity 50.0 270 > th dose independent rect. 2 4
516 415.05 atmosphere 995.0 270 > th dose independent rect. 2 4
517 415.05 atmosphere 1015.0 270 < th dose independent rect. 2 4
523 415.26 wind 9.0 270 < th dose independent rect. 6 20
525 415.73 wind 7.0 270 < th dose independent rect. 1 6
543 416.93 wind 1.0 270 > th dose independent rect. 19 7
575 417.79 radiation 30.0 270 < th dose dependent rect. 1 7
579 418.02 humidity 70.0 270 > th dose independent rect. 1 6
582 418.30 precipitation 0.1 270 < th dose independent rect. 1 6
583 418.30 precipitation 0.1 270 < th dose dependent rect. 1 6
590 418.67 wind 1.0 270 > th dose independent rect. 6 9
593 418.77 wind 9.0 270 < th dose independent rect. 7 18
594 418.78 temperature 10.0 270 > th dose independent rect. 1 6
596 418.78 temperature 30.0 270 < th dose independent rect. 1 6
597 418.78 humidity 50.0 270 > th dose independent rect. 1 6
599 418.78 atmosphere 995.0 270 > th dose independent rect. 1 6
600 418.78 atmosphere 1015.0 270 < th dose independent rect. 1 6
622 419.84 precipitation 0.1 270 < th dose independent rect. 6 20
624 419.84 precipitation 0.1 270 < th dose dependent rect. 6 20
659 423.41 precipitation 0.1 270 < th dose independent rect. 7 18
660 423.41 precipitation 0.1 270 < th dose dependent rect. 7 18
722 425.12 temperature 10.0 270 > th dose dependent rect. 19 18
748 427.26 wind 9.0 270 < th dose dependent rect. 2 4
785 427.95 atmosphere 1015.0 270 < th dose independent rect. 20 17
790 428.27 humidity 50.0 270 > th dose dependent rect. 2 4
810 429.07 radiation 30.0 90 < th dose dependent rect. 15 18
984 435.05 radiation 40.0 270 < th dose dependent rect. 15 15
985 435.08 temperature 15.0 270 > th dose independent rect. 20 17