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Os01g0202500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, B-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.32 (0.0526) R2 : 0.873
β1 : -0.134 (0.224) R2dD : 0.000146 R2D : -0.00162
β2 : 6.01 (0.143) R2dC : 0.611 R2C : 0.782
β3 : -2.73 (0.211) R2dE : 0.0611 R2E : 0.22
β4 : 2.73 (0.558) R2dD*C : 0.00718 R2D*C : 0.0134
β5 : -6.6 (1.42) R2dD*E : 0.00925 R2D*E : 0.0228
γ1 : 0.673 (0.117) R2dN8 : 0.014 R2N8 : -0.000573
σ : 0.971
deviance : 427.51
__
_____
C
peak time of C : 15.2
E
wheather : temperature
threshold : 19.61
memory length : 275
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.93
open length of G : 2.98

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
427.51 0.971 9.32 -0.134 6.01 -2.73 2.73 -6.6 0.673 15.2 19.61 275 2.93 2.98
444.77 0.982 9.29 0.445 5.9 -2.69 3.26 -- 0.748 15.2 17.04 295 2.85 2.91
449.16 0.987 9.32 -0.0553 6.01 -2.71 -- -6.67 0.717 15.2 18.92 278 2.84 2.93
479.94 1.02 9.28 0.519 5.9 -2.71 -- -- 0.788 15.1 17.15 298 2.88 2.75
1413.61 1.75 9.19 0.727 -- -6.11 -- -4.18 1.09 -- 4.566 227 0.00303 6.51
569.97 1.12 9.38 0.272 7.01 -- 3.9 -- 0.496 15.7 -- -- -- --
615.71 1.16 9.37 0.332 7.03 -- -- -- 0.518 15.7 -- -- -- --
1428.14 1.76 9.22 0.514 -- -5.96 -- -- 0.894 -- 1.684 231 0.00256 6.43
486.43 1.03 9.28 -- 5.86 -2.77 -- -- 0.752 15.1 16.78 298 2.85 2.82
3349.37 2.7 9.36 0.0388 -- -- -- -- 0.331 -- -- -- -- --
618.61 1.16 9.38 -- 7.02 -- -- -- 0.482 15.7 -- -- -- --
1435.08 1.76 9.25 -- -- -5.85 -- -- 0.833 -- 0.2257 226 0.0167 6.47
3349.41 2.7 9.36 -- -- -- -- -- 0.327 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 428.78 temperature 20.0 270 > th dose dependent rect. 3 3
3 431.42 temperature 20.0 270 > th dose independent rect. 2 4
12 440.48 wind 5.0 90 < th dose dependent rect. 3 6
19 443.82 wind 3.0 90 < th dose independent rect. 3 6
23 445.60 wind 5.0 10 < th dose dependent rect. 4 5
25 446.33 wind 3.0 270 < th dose independent rect. 2 4
27 447.31 wind 5.0 270 < th dose dependent rect. 2 4
46 452.14 wind 3.0 10 < th dose independent rect. 4 5
47 452.57 wind 5.0 270 < th dose dependent rect. 3 2
63 454.93 wind 3.0 270 < th dose independent rect. 3 2
66 455.46 temperature 20.0 10 > th dose dependent rect. 3 4
69 455.69 wind 3.0 270 < th dose independent rect. 1 6
86 457.58 temperature 20.0 270 > th dose independent rect. 22 3
100 458.76 wind 5.0 90 < th dose dependent rect. 3 8
110 459.74 temperature 20.0 10 > th dose independent rect. 22 6
127 460.68 humidity 70.0 270 > th dose dependent rect. 2 4
128 460.76 humidity 60.0 90 > th dose dependent rect. 3 6
131 461.24 temperature 20.0 10 > th dose independent rect. 24 4
146 462.18 humidity 70.0 270 > th dose dependent rect. 3 2
165 463.78 humidity 80.0 90 > th dose independent rect. 3 5
170 464.25 radiation 20.0 90 < th dose independent rect. 3 6
172 464.27 humidity 50.0 10 > th dose dependent rect. 4 5
185 465.05 radiation 40.0 90 < th dose dependent rect. 3 6
187 465.07 temperature 25.0 720 > th dose dependent rect. 20 1
190 465.15 humidity 90.0 720 < th dose dependent rect. 19 2
191 465.16 precipitation 0.1 270 < th dose independent rect. 2 4
192 465.16 precipitation 0.1 270 < th dose dependent rect. 2 4
194 465.25 humidity 80.0 270 > th dose independent rect. 3 2
209 466.14 precipitation 0.1 270 < th dose independent rect. 3 2
210 466.14 precipitation 0.1 270 < th dose dependent rect. 3 2
217 466.85 radiation 40.0 10 < th dose dependent rect. 4 5
218 466.88 wind 3.0 90 < th dose independent rect. 3 8
225 467.28 temperature 20.0 270 > th dose independent rect. 2 15
230 467.58 atmosphere 1010.0 270 < th dose independent rect. 2 4
235 467.82 atmosphere 1015.0 270 < th dose dependent rect. 3 2
244 468.23 atmosphere 1015.0 90 < th dose dependent rect. 3 4
246 468.28 radiation 10.0 270 < th dose independent rect. 2 4
259 468.59 temperature 10.0 270 > th dose independent rect. 2 4
261 468.59 temperature 30.0 270 < th dose independent rect. 2 4
262 468.59 humidity 50.0 270 > th dose independent rect. 2 4
265 468.59 atmosphere 995.0 270 > th dose independent rect. 2 4
270 468.59 temperature 10.0 270 > th dose independent rect. 6 20
276 468.79 radiation 20.0 10 < th dose independent rect. 4 5
291 469.23 radiation 40.0 270 < th dose dependent rect. 2 4
302 469.53 humidity 70.0 4320 < th dose independent rect. 19 1
345 470.62 temperature 10.0 270 > th dose independent rect. 3 2
348 470.62 humidity 50.0 270 > th dose independent rect. 3 2
351 470.62 atmosphere 995.0 270 > th dose independent rect. 3 2
352 470.62 atmosphere 1010.0 270 < th dose independent rect. 3 2
354 470.62 radiation 20.0 270 < th dose independent rect. 3 2
357 470.62 temperature 10.0 270 > th dose independent rect. 5 22
359 470.72 radiation 40.0 270 < th dose dependent rect. 3 2
366 470.85 radiation 1.0 270 < th dose independent rect. 3 2
368 470.87 wind 9.0 270 < th dose independent rect. 6 20
402 471.96 atmosphere 1015.0 10 < th dose dependent rect. 4 3
412 472.18 humidity 70.0 10 > th dose independent rect. 4 5
414 472.35 temperature 15.0 270 > th dose independent rect. 11 10
415 472.35 precipitation 0.1 270 < th dose independent rect. 6 20
417 472.35 precipitation 0.1 270 < th dose dependent rect. 6 20
443 472.76 wind 9.0 90 < th dose dependent rect. 3 14
462 473.32 temperature 30.0 4320 > th dose dependent rect. 18 15
465 473.37 precipitation 0.1 90 < th dose independent rect. 3 6
466 473.37 precipitation 0.1 90 < th dose dependent rect. 3 6
469 473.44 temperature 30.0 4320 > th dose dependent rect. 18 1
485 473.61 humidity 70.0 4320 > th dose independent rect. 19 1
497 473.86 humidity 70.0 4320 > th dose independent rect. 19 10
508 474.14 wind 3.0 90 < th dose dependent rect. 3 10
510 474.19 atmosphere 1015.0 10 < th dose dependent rect. 4 5
514 474.22 precipitation 0.1 10 < th dose independent rect. 4 5
515 474.22 precipitation 0.1 10 < th dose dependent rect. 4 5
549 474.70 atmosphere 1010.0 90 < th dose independent rect. 3 6
551 474.73 wind 9.0 270 < th dose independent rect. 5 22
552 474.75 humidity 70.0 4320 > th dose independent rect. 19 5
556 474.77 temperature 10.0 720 > th dose dependent rect. 18 12
582 475.38 temperature 10.0 10 > th dose independent rect. 4 5
584 475.38 temperature 30.0 10 < th dose independent rect. 4 5
585 475.38 humidity 50.0 10 > th dose independent rect. 4 5
587 475.38 atmosphere 995.0 10 > th dose independent rect. 4 5
588 475.38 atmosphere 1015.0 10 < th dose independent rect. 4 5
589 475.38 temperature 10.0 10 > th dose independent rect. 9 19
591 475.53 temperature 10.0 10 > th dose dependent rect. 4 18
596 475.61 wind 3.0 90 < th dose dependent rect. 3 12
628 476.16 precipitation 0.1 10 < th dose independent rect. 4 3
630 476.16 precipitation 0.1 10 < th dose dependent rect. 4 3
640 476.36 radiation 40.0 1440 < th dose dependent rect. 18 10
662 476.75 temperature 10.0 270 > th dose independent rect. 21 14
663 476.75 atmosphere 995.0 270 > th dose independent rect. 21 14
673 476.91 humidity 70.0 4320 < th dose dependent rect. 19 12
700 477.29 temperature 10.0 10 > th dose independent rect. 4 3
702 477.29 temperature 30.0 10 < th dose independent rect. 4 3
703 477.29 humidity 50.0 10 > th dose independent rect. 4 3
706 477.29 atmosphere 995.0 10 > th dose independent rect. 4 3
707 477.29 atmosphere 1015.0 10 < th dose independent rect. 4 3
711 477.29 temperature 10.0 10 > th dose independent rect. 7 21
714 477.38 wind 9.0 270 < th dose independent rect. 11 10
736 477.54 humidity 70.0 4320 < th dose dependent rect. 19 2
749 477.61 temperature 10.0 90 > th dose independent rect. 3 6
752 477.61 atmosphere 995.0 90 > th dose independent rect. 3 6
754 477.61 temperature 10.0 90 > th dose independent rect. 9 18
793 478.30 wind 9.0 10 < th dose independent rect. 9 19
801 478.43 wind 3.0 90 < th dose dependent rect. 3 18
804 478.47 atmosphere 1015.0 270 < th dose independent rect. 6 20
810 478.57 atmosphere 1015.0 90 < th dose dependent rect. 3 6
829 478.73 wind 9.0 270 < th dose independent rect. 21 14
832 478.77 precipitation 0.1 270 < th dose independent rect. 11 10
833 478.77 precipitation 0.1 270 < th dose dependent rect. 11 10
846 478.97 temperature 20.0 270 > th dose independent rect. 1 20
860 479.24 humidity 50.0 270 > th dose independent rect. 21 14
872 479.42 humidity 80.0 720 < th dose independent rect. 19 2
876 479.45 precipitation 0.1 270 < th dose independent rect. 5 22
877 479.45 precipitation 0.1 270 < th dose dependent rect. 5 22
904 479.84 wind 9.0 10 < th dose independent rect. 7 21
918 480.03 wind 9.0 90 < th dose independent rect. 9 18
919 480.04 atmosphere 995.0 270 > th dose independent rect. 6 20
938 480.39 atmosphere 995.0 10 > th dose independent rect. 9 19
964 480.82 atmosphere 1015.0 10 < th dose independent rect. 9 19
999 481.20 radiation 1.0 720 > th dose dependent rect. 18 1