Os06g0713000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, B-box domain containing protein.
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Os06g0713000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, B-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 156.93 | 0.589 | 8.77 | 0.959 | 0.226 | 2.77 | 0.719 | -4.16 | 0.724 | 7.34 | 20.9 | 4709 | -- | -- |
| 157.41 | 0.584 | 8.69 | 1.55 | 0.121 | 3.52 | 0.833 | -- | 0.663 | 8.48 | 12.52 | 7133 | -- | -- |
| 157.82 | 0.585 | 8.77 | 0.928 | 0.25 | 2.76 | -- | -4.36 | 0.716 | 5.92 | 21.1 | 4708 | -- | -- |
| 158.86 | 0.587 | 8.69 | 1.58 | 0.15 | 3.5 | -- | -- | 0.652 | 5.85 | 12 | 7301 | -- | -- |
| 160.46 | 0.59 | 8.78 | 0.961 | -- | 2.79 | -- | -4.44 | 0.736 | -- | 21.2 | 4532 | -- | -- |
| 365.1 | 0.896 | 8.48 | 3.36 | 0.234 | -- | 0.187 | -- | 1.59 | 4.98 | -- | -- | -- | -- |
| 365.13 | 0.895 | 8.48 | 3.36 | 0.235 | -- | -- | -- | 1.59 | 4.49 | -- | -- | -- | -- |
| 159.88 | 0.589 | 8.69 | 1.59 | -- | 3.48 | -- | -- | 0.665 | -- | 11.55 | 7195 | -- | -- |
| 179.22 | 0.624 | 8.79 | -- | 0.187 | 3.61 | -- | -- | 0.204 | 6.01 | 8.591 | 25257 | -- | -- |
| 368.1 | 0.896 | 8.48 | 3.37 | -- | -- | -- | -- | 1.59 | -- | -- | -- | -- | -- |
| 662.92 | 1.2 | 8.56 | -- | 0.299 | -- | -- | -- | 1.21 | 4.22 | -- | -- | -- | -- |
| 180.94 | 0.626 | 8.79 | -- | -- | 3.59 | -- | -- | 0.226 | -- | 8.6 | 25495 | -- | -- |
| 667.76 | 1.21 | 8.57 | -- | -- | -- | -- | -- | 1.22 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 147.55 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 11 | 150.24 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 13 | 150.27 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 22 | 151.40 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 23 | 151.44 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 44 | 153.13 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 73 | 154.96 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 79 | 155.24 | radiation | 1 | 43200 | < th | dose dependent | sin | 13 | NA |
| 85 | 155.28 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 109 | 155.83 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 117 | 156.16 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 7 |
| 122 | 156.23 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 133 | 156.47 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 140 | 156.56 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 21 |
| 164 | 156.84 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 10 |
| 165 | 156.84 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 169 | 156.92 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 9 |
| 195 | 157.29 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 204 | 157.34 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 13 |
| 217 | 157.45 | humidity | 90 | 43200 | > th | dose dependent | sin | 3 | NA |
| 234 | 157.55 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 7 |
| 238 | 157.59 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 9 |
| 266 | 157.68 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 18 |
| 268 | 157.69 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 294 | 157.74 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 312 | 157.77 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 23 |
| 314 | 157.78 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 317 | 157.78 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 22 |
| 337 | 157.86 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 357 | 157.96 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 15 |
| 359 | 157.97 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 360 | 157.97 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 21 |
| 365 | 158.01 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 17 |
| 375 | 158.07 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 381 | 158.11 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 383 | 158.11 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 13 |
| 405 | 158.19 | temperature | 20 | 4320 | > th | dose dependent | sin | 7 | NA |
| 426 | 158.29 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 440 | 158.36 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 7 |
| 443 | 158.38 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 453 | 158.41 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 9 |
| 523 | 158.73 | humidity | 90 | 43200 | < th | dose independent | rect. | 7 | 19 |
| 544 | 158.83 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 17 |
| 556 | 158.91 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 19 |
| 562 | 158.95 | humidity | 90 | 43200 | > th | dose dependent | rect. | 16 | 21 |
| 570 | 158.98 | temperature | 25 | 4320 | < th | dose independent | sin | 4 | NA |
| 586 | 159.03 | temperature | 25 | 4320 | > th | dose independent | sin | 4 | NA |
| 619 | 159.16 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 628 | 159.18 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 643 | 159.21 | temperature | 20 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 650 | 159.24 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 663 | 159.28 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 738 | 159.53 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 753 | 159.57 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 23 |
| 769 | 159.65 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 20 |
| 784 | 159.69 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 800 | 159.74 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 801 | 159.75 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 818 | 159.80 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 16 |
| 820 | 159.80 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 18 |
| 828 | 159.81 | humidity | 90 | 43200 | > th | dose independent | sin | 4 | NA |
| 830 | 159.81 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 14 |
| 847 | 159.84 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 849 | 159.85 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 856 | 159.86 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 871 | 159.91 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 11 |
| 891 | 159.97 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 13 |
| 958 | 160.08 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 959 | 160.08 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 11 |
| 988 | 160.13 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 4 |