FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0204600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, B-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0274) R2 : 0.801
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.08 (0.0724) R2dC : 0.814 R2C : 0.734
β3 : 1.31 (0.108) R2dE : 0.0668 R2E : -0.0171
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0696 (0.0578) R2dN8 : 0.000787 R2N8 : -0.00409
σ : 0.513
deviance : 121.28
__
_____
C
peak time of C : 6.57
E
wheather : humidity
threshold : 78.83
memory length : 1034
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.42 0.494 11.2 0.394 3.14 1.36 1.32 -0.639 0.118 6.61 78.68 967 -- --
110.59 0.49 11.1 0.445 3.21 1.32 1.49 -- 0.129 6.63 81.02 920 -- --
114.56 0.499 11.2 0.391 3.15 1.37 -- -1.06 0.109 6.61 79.24 967 -- --
115.78 0.501 11.2 0.48 3.16 1.26 -- -- 0.105 6.59 81.39 957 -- --
545.6 1.09 11.2 0.598 -- 1.46 -- -0.25 0.127 -- 87.25 1318 -- --
139.95 0.555 11.2 0.637 2.94 -- 1.09 -- 0.063 6.2 -- -- -- --
142.83 0.56 11.2 0.649 2.95 -- -- -- 0.0589 6.17 -- -- -- --
545.63 1.09 11.2 0.566 -- 1.42 -- -- 0.123 -- 87.32 1320 -- --
121.28 0.513 11.2 -- 3.08 1.31 -- -- 0.0696 6.57 78.83 1034 -- --
593.86 1.14 11.2 0.731 -- -- -- -- 0.124 -- -- -- -- --
153.92 0.58 11.2 -- 2.96 -- -- -- -0.0134 6.16 -- -- -- --
553.42 1.1 11.2 -- -- 1.49 -- -- 0.095 -- 84 1322 -- --
607.95 1.15 11.2 -- -- -- -- -- 0.043 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 105.82 humidity 80 1440 < th dose independent rect. 7 7
6 107.52 humidity 80 1440 > th dose independent rect. 7 7
21 109.10 humidity 50 1440 > th dose dependent rect. 12 1
22 109.10 humidity 90 1440 < th dose dependent rect. 12 1
38 110.36 humidity 70 1440 > th dose independent rect. 18 20
51 110.82 humidity 80 1440 < th dose dependent rect. 7 7
92 111.69 humidity 80 1440 < th dose independent sin 3 NA
103 111.86 radiation 10 1440 > th dose independent rect. 17 21
106 111.91 radiation 10 1440 > th dose independent rect. 6 8
123 111.94 humidity 70 1440 < th dose independent rect. 17 22
153 112.13 humidity 70 1440 > th dose independent rect. 23 15
155 112.14 humidity 70 1440 > th dose independent rect. 21 17
156 112.15 humidity 80 1440 > th dose independent sin 2 NA
168 112.19 humidity 80 1440 < th dose dependent sin 3 NA
175 112.29 humidity 50 1440 > th dose dependent rect. 9 6
193 112.44 wind 1 43200 < th dose independent rect. 23 5
224 112.57 humidity 50 720 > th dose dependent rect. 6 19
253 112.80 humidity 80 1440 < th dose independent rect. 7 3
254 112.80 humidity 70 720 > th dose independent rect. 6 19
269 112.87 humidity 70 1440 > th dose independent rect. 9 10
277 112.88 humidity 70 1440 > th dose independent rect. 9 19
343 112.98 humidity 80 1440 < th dose dependent rect. 18 20
366 113.04 humidity 50 720 > th dose dependent rect. 6 17
371 113.05 humidity 70 1440 > th dose independent rect. 3 17
402 113.07 humidity 70 1440 > th dose independent no NA NA
474 113.20 radiation 10 1440 > th dose independent sin 4 NA
575 113.47 humidity 70 1440 < th dose independent no NA NA
576 113.47 radiation 10 1440 > th dose independent rect. 8 6
744 113.74 humidity 70 720 < th dose independent rect. 12 23
788 113.85 radiation 10 1440 > th dose independent rect. 11 23
870 114.02 wind 1 43200 < th dose dependent rect. 23 6
937 114.18 humidity 50 720 > th dose dependent rect. 11 14
944 114.20 radiation 10 1440 > th dose independent rect. 8 23