BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0204600 Os05g0204600|AK106865
(378 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0204600 Zinc finger, B-box domain containing protein 510 e-145
Os01g0202500 Zinc finger, B-box domain containing protein 221 1e-57
Os06g0152200 Zinc-finger protein R2931 149 4e-36
Os12g0209200 Similar to CONSTANS-LIKE a 120 1e-27
Os04g0540200 Zinc finger, B-box domain containing protein 115 5e-26
Os02g0646200 Zinc finger, B-box domain containing protein 113 2e-25
Os04g0493000 Zinc finger, B-box domain containing protein 102 3e-22
Os02g0606200 Zinc finger, B-box domain containing protein 102 5e-22
Os06g0713000 Zinc finger, B-box domain containing protein 100 2e-21
Os09g0527900 Similar to Hd1-like protein 77 2e-14
>Os05g0204600 Zinc finger, B-box domain containing protein
Length = 378
Score = 510 bits (1314), Expect = e-145, Method: Compositional matrix adjust.
Identities = 267/363 (73%), Positives = 267/363 (73%)
Query: 16 RSSPTTTGGGARVLAAAELARMKLLCSACEAAEASVLCCADEAALCARCDRDIHAANRLA 75
RSSPTTTGGGARVLAAAELARMKLLCSACEAAEASVLCCADEAALCARCDRDIHAANRLA
Sbjct: 16 RSSPTTTGGGARVLAAAELARMKLLCSACEAAEASVLCCADEAALCARCDRDIHAANRLA 75
Query: 76 GKHLRXXXXXXXXXXXXXXXXXXXXXXXXXKCDICQESHAYFFCLEDRALLCRSCDVAVH 135
GKHLR KCDICQESHAYFFCLEDRALLCRSCDVAVH
Sbjct: 76 GKHLRLPLLSPASSSSSSAAALAPPPPSPPKCDICQESHAYFFCLEDRALLCRSCDVAVH 135
Query: 136 TANAFVSAHRRFLLTGVQVGQEQDXXXXXXXXXXXXXXXXXXXXXXXXXXXLYGEGGGGF 195
TANAFVSAHRRFLLTGVQVGQEQD LYGEGGGGF
Sbjct: 136 TANAFVSAHRRFLLTGVQVGQEQDEHSPDPPEPSPPPPPPPPASKSDHPAPLYGEGGGGF 195
Query: 196 SWDAADSPAAGGLPDWSAVVDQFGSPPXXXXXXXXXXXXXXXXKRSPRAPAFGGQGGMMD 255
SWDAADSPAAGGLPDWSAVVDQFGSPP KRSPRAPAFGGQGGMMD
Sbjct: 196 SWDAADSPAAGGLPDWSAVVDQFGSPPPPRHTDTATVTTPPPTKRSPRAPAFGGQGGMMD 255
Query: 256 WPLGEXXXXXXXXXXXXXXXXXXXXXXKADSGKLGGSTDGSPYYRSSSEDDRNADELFGQ 315
WPLGE KADSGKLGGSTDGSPYYRSSSEDDRNADELFGQ
Sbjct: 256 WPLGEFFGGFTDFTGGFGFGFGDSGTSKADSGKLGGSTDGSPYYRSSSEDDRNADELFGQ 315
Query: 316 VPEIQWSVPELPSPPTASGLHWQRHPAATHXXXXXXPDTTAFVPDICSPDSCFPATTSKR 375
VPEIQWSVPELPSPPTASGLHWQRHPAATH PDTTAFVPDICSPDSCFPATTSKR
Sbjct: 316 VPEIQWSVPELPSPPTASGLHWQRHPAATHGGGGGGPDTTAFVPDICSPDSCFPATTSKR 375
Query: 376 RRQ 378
RRQ
Sbjct: 376 RRQ 378
>Os01g0202500 Zinc finger, B-box domain containing protein
Length = 357
Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 155/377 (41%), Positives = 179/377 (47%), Gaps = 56/377 (14%)
Query: 37 MKLLCSACEAAEASVLCCADEAALCARCDRDIHAANRLAGKHLRXXXXXXXXXXXXXXXX 96
MK+LCSACEAAEA VLCCAD+AALCARCD +HAANRLAGKH R
Sbjct: 1 MKVLCSACEAAEARVLCCADDAALCARCDLHVHAANRLAGKHHRLPLLSSSSSSSSPSPP 60
Query: 97 XXXXXXXXXKCDICQESHAYFFCLEDRALLCRSCDVAVHTANAFVSAHRRFLLTGVQVGQ 156
CDICQ++HAYFFC+EDRALLCR+CDVAVHTANA VSAHRRFLLTGV VG
Sbjct: 61 ---------TCDICQDAHAYFFCVEDRALLCRACDVAVHTANALVSAHRRFLLTGVHVGL 111
Query: 157 EQDXXXXXXXXXXXXXXXXXXXXXXXXXXXLYGEGGGGFSWDAADSPAAGG--------L 208
+ +S D A GG L
Sbjct: 112 DAAADDDDKHPPHPLSSSLPRNTAPPPQPPPKRSPSPIYSDDDVIDWATGGHDIGITGNL 171
Query: 209 PDWSAVVDQFGSPPXXXXXXXXXXXXXXXXKRSPRAPAFGGQ---------GGMMDWPLG 259
PDWS V +QF +P KR+ R P G GG DWPL
Sbjct: 172 PDWSLVDEQFNTP------ALPPVVTKTPPKRASRGPVTAGTAAAVFGNLAGGSPDWPLN 225
Query: 260 EXXXXXXXXXXXXXXXXXXXXXXKADSGKLGG----------STDGSPYYRSSSEDDRNA 309
E KADSGK+G S+ S +++
Sbjct: 226 E---FFGFADFSSGFGFAENGTSKADSGKIGSMDGSPNGGRSSSSSSSSSAAAAGGGGGG 282
Query: 310 DELFGQVPEIQWSVPELPSPPTASGLHWQRHPAATHXXXXXXPDTTAFVPDICSPDS--- 366
+ FGQVPE+ W+VPELPSPPTASGLHWQR P + FVPDI SP++
Sbjct: 283 QDFFGQVPEVHWAVPELPSPPTASGLHWQRDP---RYGGGATDASAVFVPDISSPENPFR 339
Query: 367 CFPAT-----TSKRRRQ 378
CF A T KRRR+
Sbjct: 340 CFAAAAAGDHTMKRRRR 356
>Os06g0152200 Zinc-finger protein R2931
Length = 360
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 72/119 (60%), Positives = 82/119 (68%), Gaps = 5/119 (4%)
Query: 37 MKLLCSACEAAEASVLCCADEAALCARCDRDIHAANRLAGKHLRXXXXXXXXXXXXXXXX 96
MK+ C+AC AAEA VLCCADEAALC CD ++HAAN+LAGKH R
Sbjct: 1 MKIQCNACGAAEARVLCCADEAALCTACDEEVHAANKLAGKHQRVPLLSDDGGAAPAAAA 60
Query: 97 XXXXXXXXXKCDICQESHAYFFCLEDRALLCRSCDVAVHTANAFVSAHRRFLLTGVQVG 155
KCDICQE+ YFFCLEDRALLCR CDV++HT N+FVS H+RFLLTGVQVG
Sbjct: 61 PAVP-----KCDICQEASGYFFCLEDRALLCRDCDVSIHTVNSFVSVHQRFLLTGVQVG 114
>Os12g0209200 Similar to CONSTANS-LIKE a
Length = 210
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/119 (60%), Positives = 80/119 (67%), Gaps = 5/119 (4%)
Query: 37 MKLLCSACEAAEASVLCCADEAALCARCDRDIHAANRLAGKHLRXXXXXXXXXXXXXXXX 96
MK+ C ACE AEA+VLCCADEAALC RCD +H+ANRLAGKH R
Sbjct: 1 MKIGCDACEQAEAAVLCCADEAALCRRCDAAVHSANRLAGKHTRVALLLPSSSSAAAGDD 60
Query: 97 XXXXXXXXXKCDICQESHAYFFCLEDRALLCRSCDVAVHTANAFVSAHRRFLLTGVQVG 155
CDICQE YFFCLEDRALLCRSCDVAVHTA A +AHRRFL+TGV++G
Sbjct: 61 DHHP-----TCDICQEKTGYFFCLEDRALLCRSCDVAVHTATAHAAAHRRFLITGVRIG 114
>Os04g0540200 Zinc finger, B-box domain containing protein
Length = 250
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 37 MKLLCSACEAAEASVLCCADEAALCARCDRDIHAANRLAGKHLRXXXXXXXXXXXXXXXX 96
MK+ C C A ASV CCADEAALC CDR +H+AN+LAGKH R
Sbjct: 1 MKVQCDVCAAEAASVFCCADEAALCDACDRRVHSANKLAGKHRRFSLLQPLASSSSAQKP 60
Query: 97 XXXXXXXXXKCDICQESHAYFFCLEDRALLCRSCDVAVHTANAFVSAHRRFLLTGVQV 154
CDICQE + FC EDRA+LCR CDV VHT + H RFLLTGV++
Sbjct: 61 PL--------CDICQEKRGFLFCKEDRAILCRECDVTVHTTSELTRRHGRFLLTGVRL 110
>Os02g0646200 Zinc finger, B-box domain containing protein
Length = 269
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 67/121 (55%), Gaps = 6/121 (4%)
Query: 37 MKLLCSACEAAEASVLCCADEAALCARCDRDIHAANRLAGKHLRXXXXXXXXXXXXXXXX 96
MK+ C C A ASV CCADEAALC CD +H AN+LAGKH R
Sbjct: 1 MKVQCDVCAAEAASVFCCADEAALCDACDHRVHRANKLAGKHRRFSLLNPSASGRSPTST 60
Query: 97 XXXXXXXXXKCDICQESHAYFFCLEDRALLCRSCDVAVHTANAFVSAHRRFLLTGVQVGQ 156
CDICQE + FC EDRA+LCR CDV VHTA+ H R+LLTGV++
Sbjct: 61 TAPL------CDICQEKRGFLFCKEDRAILCRECDVPVHTASELTMRHSRYLLTGVRLSS 114
Query: 157 E 157
E
Sbjct: 115 E 115
>Os04g0493000 Zinc finger, B-box domain containing protein
Length = 257
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 72/119 (60%), Gaps = 13/119 (10%)
Query: 37 MKLLCSACEAAEASVLCCADEAALCARCDRDIHAANRLAGKHLRXXXXXXXXXXXXXXXX 96
M++ C ACEAA A+V+CCADEAALCARCD +IHAAN+LA KH R
Sbjct: 1 MRIQCDACEAAAATVVCCADEAALCARCDVEIHAANKLASKHQR-------------LPL 47
Query: 97 XXXXXXXXXKCDICQESHAYFFCLEDRALLCRSCDVAVHTANAFVSAHRRFLLTGVQVG 155
+CD+CQE A+ FC+EDRAL CR CD +H H+R+L TG++VG
Sbjct: 48 DAALPAALPRCDVCQEKAAFIFCVEDRALFCRDCDEPIHVPGTLSGNHQRYLTTGIRVG 106
>Os02g0606200 Zinc finger, B-box domain containing protein
Length = 271
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 72/119 (60%), Gaps = 14/119 (11%)
Query: 37 MKLLCSACEAAEASVLCCADEAALCARCDRDIHAANRLAGKHLRXXXXXXXXXXXXXXXX 96
MK+ C ACE+A A+V+CCADEAALCA CD ++HAAN+LAGKH R
Sbjct: 1 MKIQCDACESAAAAVVCCADEAALCAACDVEVHAANKLAGKHQR--------------LP 46
Query: 97 XXXXXXXXXKCDICQESHAYFFCLEDRALLCRSCDVAVHTANAFVSAHRRFLLTGVQVG 155
+CD+CQE A+ FC+EDRAL CR CD +H H+R+L TG++VG
Sbjct: 47 LEALSARLPRCDVCQEKAAFIFCVEDRALFCRDCDEPIHVPGTLSGNHQRYLATGIRVG 105
>Os06g0713000 Zinc finger, B-box domain containing protein
Length = 308
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 65/119 (54%), Gaps = 5/119 (4%)
Query: 37 MKLLCSACEAAEASVLCCADEAALCARCDRDIHAANRLAGKHLRXXXXXXXXXXXXXXXX 96
M++ C C A A+VLCCADEAALC+ CDR +H ANRLA KH R
Sbjct: 1 MRVQCDVCAAEPAAVLCCADEAALCSACDRRVHRANRLASKHRRLPLVHPSSSSSGDGGA 60
Query: 97 XXXXXXXXXKCDICQESHAYFFCLEDRALLCRSCDVAVHTANAFVSAHRRFLLTGVQVG 155
CD+C+E FC+EDRA+LC CD +H+AN + H RFLL G ++
Sbjct: 61 AAAPL-----CDVCREKRGLVFCVEDRAILCADCDEPIHSANDLTAKHTRFLLVGAKLS 114
>Os09g0527900 Similar to Hd1-like protein
Length = 211
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 37 MKLLCSACEAAEASVLCCADEAALCARCDRDIHAANRLAGKHLRXXXXXXXXXXXXXXXX 96
M+ +C CE+A A + C ADEAALC CD +H N+LA +H+R
Sbjct: 1 MRTICDVCESAPAVLFCVADEAALCRSCDEKVHMCNKLARRHVR---------------V 45
Query: 97 XXXXXXXXXKCDICQESHAYFFCLEDRALLCRSCDVAVHTANAFVSAHRRFLLTGVQV 154
+CDIC+ + A+F+C D LC SCD+ VH H R+LL +V
Sbjct: 46 GLADPNKVQRCDICENAPAFFYCEIDGTSLCLSCDMTVHVGGK--RTHGRYLLLRQRV 101
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,865,821
Number of extensions: 451972
Number of successful extensions: 1409
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1370
Number of HSP's successfully gapped: 12
Length of query: 378
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 275
Effective length of database: 11,657,759
Effective search space: 3205883725
Effective search space used: 3205883725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)