BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0486800 Os06g0486800|AK065872
(376 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0486800 Similar to Formate dehydrogenase, mitochondria... 726 0.0
Os06g0486900 Similar to Formate dehydrogenase, mitochondria... 676 0.0
AK108788 383 e-106
Os04g0650800 Similar to Phosphoglycerate dehydrogenase 114 1e-25
Os04g0107500 D-isomer specific 2-hydroxyacid dehydrogenase,... 101 1e-21
Os06g0655100 Similar to D-3-phosphoglycerate dehydrogenase,... 99 4e-21
Os04g0107200 D-isomer specific 2-hydroxyacid dehydrogenase,... 99 5e-21
Os04g0107300 D-isomer specific 2-hydroxyacid dehydrogenase,... 99 6e-21
Os07g0264100 D-isomer specific 2-hydroxyacid dehydrogenase,... 96 3e-20
Os01g0228600 Similar to 2-hydroxyacid dehydrogenase (AGR_L_... 92 5e-19
Os04g0106400 D-isomer specific 2-hydroxyacid dehydrogenase,... 91 1e-18
Os08g0447000 D-isomer specific 2-hydroxyacid dehydrogenase,... 77 2e-14
Os07g0263400 70 3e-12
Os02g0101500 Similar to NADH-dependent hydroxypyruvate redu... 67 3e-11
>Os06g0486800 Similar to Formate dehydrogenase, mitochondrial precursor (EC
1.2.1.2) (NAD- dependent formate dehydrogenase) (FDH)
Length = 376
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/376 (93%), Positives = 353/376 (93%)
Query: 1 MAMWXXXXXXXXXXXXXXXXXXTSAGSKKIVGVFYKGGEYADKNPNFVGCVEGALGIREW 60
MAMW TSAGSKKIVGVFYKGGEYADKNPNFVGCVEGALGIREW
Sbjct: 1 MAMWRAAAGHLLGRALGSRAAHTSAGSKKIVGVFYKGGEYADKNPNFVGCVEGALGIREW 60
Query: 61 LESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVSAERIKKAKNLELLLTAGI 120
LESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVSAERIKKAKNLELLLTAGI
Sbjct: 61 LESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVSAERIKKAKNLELLLTAGI 120
Query: 121 GSDHIDLPXXXXXGLTVAEVTGSNTVSVAEDELMRILILLRNFLPGYQQVVHGEWNVAGI 180
GSDHIDLP GLTVAEVTGSNTVSVAEDELMRILILLRNFLPGYQQVVHGEWNVAGI
Sbjct: 121 GSDHIDLPAAAAAGLTVAEVTGSNTVSVAEDELMRILILLRNFLPGYQQVVHGEWNVAGI 180
Query: 181 AYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKIDPELEKEIGAKYEEDLD 240
AYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKIDPELEKEIGAKYEEDLD
Sbjct: 181 AYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKIDPELEKEIGAKYEEDLD 240
Query: 241 AMLPKCDVIVINTPLTEKTRGMFNKERIAKMKKGVIIVNNARGAIMDTQAVADACSSGQV 300
AMLPKCDVIVINTPLTEKTRGMFNKERIAKMKKGVIIVNNARGAIMDTQAVADACSSGQV
Sbjct: 241 AMLPKCDVIVINTPLTEKTRGMFNKERIAKMKKGVIIVNNARGAIMDTQAVADACSSGQV 300
Query: 301 AGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFP 360
AGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFP
Sbjct: 301 AGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFP 360
Query: 361 VQNYIVKEGQLASQYQ 376
VQNYIVKEGQLASQYQ
Sbjct: 361 VQNYIVKEGQLASQYQ 376
>Os06g0486900 Similar to Formate dehydrogenase, mitochondrial precursor (EC
1.2.1.2) (NAD- dependent formate dehydrogenase) (FDH)
Length = 378
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/354 (89%), Positives = 335/354 (94%)
Query: 23 TSAGSKKIVGVFYKGGEYADKNPNFVGCVEGALGIREWLESKGHHYIVTDDKEGLNSELE 82
TSAGSKK+VGVFYKGGEYADKNPNFVGCV+ ALGIR WLESKGH YIVTDDKEG+N ELE
Sbjct: 25 TSAGSKKVVGVFYKGGEYADKNPNFVGCVDSALGIRGWLESKGHRYIVTDDKEGINCELE 84
Query: 83 KHIEDMHVLITTPFHPAYVSAERIKKAKNLELLLTAGIGSDHIDLPXXXXXGLTVAEVTG 142
KHIED HVLITTPFHPAY++AERIKKAKNLELLLTAG+GSDHIDLP GLTVAE+TG
Sbjct: 85 KHIEDAHVLITTPFHPAYITAERIKKAKNLELLLTAGVGSDHIDLPAAAAAGLTVAEITG 144
Query: 143 SNTVSVAEDELMRILILLRNFLPGYQQVVHGEWNVAGIAYRAYDLEGKTVGTVGAGRIGR 202
SNTVSVAED+LMRIL+LLRNFLPG+ Q+V+GEWNVAGIA+R YDLEGKTVGTVGAGRIGR
Sbjct: 145 SNTVSVAEDQLMRILLLLRNFLPGHHQIVNGEWNVAGIAHRTYDLEGKTVGTVGAGRIGR 204
Query: 203 LLLQRLKPFNCNLLYHDRLKIDPELEKEIGAKYEEDLDAMLPKCDVIVINTPLTEKTRGM 262
LLLQRLKPFNCNL+YHDR+KIDPELEKEIGAKYEEDLDAMLPKCDV+VIN PLTEKTRGM
Sbjct: 205 LLLQRLKPFNCNLMYHDRVKIDPELEKEIGAKYEEDLDAMLPKCDVVVINMPLTEKTRGM 264
Query: 263 FNKERIAKMKKGVIIVNNARGAIMDTQAVADACSSGQVAGYGGDVWFPQPAPKDHPWRYM 322
FNKERIAKMKKGV IVNNARGAIMDTQAVADAC+SG VAGYGGDVWFPQPAPKDHPWRYM
Sbjct: 265 FNKERIAKMKKGVTIVNNARGAIMDTQAVADACASGHVAGYGGDVWFPQPAPKDHPWRYM 324
Query: 323 PNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKEGQLASQYQ 376
PNHAMTPH SGTTID QLRYAAGVKDMLDRYFKGEDFP QNYIVK GQLASQYQ
Sbjct: 325 PNHAMTPHCSGTTIDGQLRYAAGVKDMLDRYFKGEDFPAQNYIVKAGQLASQYQ 378
>AK108788
Length = 411
Score = 383 bits (984), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/364 (53%), Positives = 248/364 (68%), Gaps = 12/364 (3%)
Query: 23 TSAGSKKIVGVFYKGGEYADKNPNFVGCVEGALGIREWLESKGHHYIVTDDKEGLNSELE 82
+S+ K++ Y G E+A + P +G E LGIR+WLE +GH + T DKEG NS E
Sbjct: 40 SSSRQGKVLLCLYDGKEHAKQEPRLLGTTENELGIRKWLEDQGHTLVTTSDKEGENSVFE 99
Query: 83 KHIEDMHVLITTPFHPAYVSAERIKKAKNLELLLTAGIGSDHIDL--PXXXXXGLTVAEV 140
K + D V+ITTPFHP Y++AER+KK KNL++ +TAGIGSDH+DL G+TVAEV
Sbjct: 100 KEMVDAEVIITTPFHPGYLTAERLKKCKNLKIAVTAGIGSDHVDLNVANETNGGITVAEV 159
Query: 141 TGSNTVSVAEDELMRILILLRNFLPGYQQVVHGEWNVAGIAYRAYDLEGKTVGTVGAGRI 200
TGSN VSVAE +M IL L+RNF P +Q+ G+W+VA A +DLEGK VGTV GRI
Sbjct: 160 TGSNVVSVAEHVVMTILTLVRNFGPAREQIARGDWDVAEAAKNEFDLEGKVVGTVAVGRI 219
Query: 201 GRLLLQRLKPFNCN-LLYHDRLKIDPELEKEIGAKYEEDLDAMLPKCDVIVINTPLTEKT 259
G +L+RLKPF+C LLY D + E EKEIG + E+L+ ML +CDV+ IN PL EKT
Sbjct: 220 GERVLRRLKPFDCKELLYFDYQPLSAEKEKEIGCRRVENLEEMLAQCDVVTINCPLHEKT 279
Query: 260 RGMFNKERIAKMKKGVIIVNNARGAIMDTQAVADACSSGQVAGYGGDVWFPQPAPKDHP- 318
RG+FNKE I+KMK G +VN ARGAI+ + VADA SGQ+ GYGGDVWFPQPAPKDHP
Sbjct: 280 RGLFNKELISKMKPGSWLVNTARGAIVVKEDVADALKSGQLRGYGGDVWFPQPAPKDHPL 339
Query: 319 -------WRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKEGQ 370
W +A PH+SGT++DAQ RYA G K +L YF G+ D+ ++ IV +G
Sbjct: 340 RTASYLGWGGSAGNATVPHMSGTSLDAQKRYADGTKAILQSYFSGKHDYRPEDLIVTKGD 399
Query: 371 LASQ 374
A++
Sbjct: 400 YATK 403
>Os04g0650800 Similar to Phosphoglycerate dehydrogenase
Length = 613
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 117/246 (47%), Gaps = 4/246 (1%)
Query: 112 LELLLTAGIGSDHIDLPXXXXXGLTVAEVTGSNTVSVAEDELMRILILLRNFLPGYQQVV 171
L ++ AG+G D++DL G V +NTV+ AE + + + RN +
Sbjct: 135 LRVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMSRNIAQADASLK 194
Query: 172 HGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKIDPELEKEI 231
G+W Y L GKT+ +G G++G + +R K +++ HD + I
Sbjct: 195 AGKWQRN--KYVGVSLVGKTIAILGFGKVGSEVARRAKGLGMHVIAHDPYA-SADRAHAI 251
Query: 232 GAKYEEDLDAMLPKCDVIVINTPLTEKTRGMFNKERIAKMKKGVIIVNNARGAIMDTQAV 291
G + DA L D I ++ PLT T M N E AKMKKGV I+N ARG ++D A+
Sbjct: 252 GVELVSMEDA-LTTADFISLHMPLTPATNKMLNDETFAKMKKGVRIINVARGGVIDEDAL 310
Query: 292 ADACSSGQVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLD 351
A SG VA DV+ +P D N +TPH+ +T++AQ A + + +
Sbjct: 311 VRALDSGIVAQAALDVFTKEPPAPDSKLVLHENVTVTPHLGASTVEAQEGVAIEIAEAVI 370
Query: 352 RYFKGE 357
KGE
Sbjct: 371 GALKGE 376
>Os04g0107500 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region
domain containing protein
Length = 316
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 120/262 (45%), Gaps = 6/262 (2%)
Query: 101 VSAERIKKAKNLELLLTAGIGSDHIDLPXXXXXGLTVAEVTGSNTVSVAEDELMRILILL 160
VSA+ + + LE+++ G DHIDL G++V VA+ + ++ +L
Sbjct: 58 VSADLVARLPKLEIVVATSTGVDHIDLDACRRRGISVTNAGEVFAPDVADYAVGLVVAVL 117
Query: 161 RNFLPGYQQVVHGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDR 220
R + G W G A + GK VG VG G IG L+ +RL F C + Y+ R
Sbjct: 118 RRVAAAEAYLRRGRWAADGDYPLATKVSGKRVGIVGLGSIGGLVARRLAAFGCVIAYNSR 177
Query: 221 LKIDPELEKEIGAKYEEDLDAMLPKCDVIVINTPLTEKTRGMFNKERIAKMKKGVIIVNN 280
P+ K+ + + + DV+V++ LTE+TR M +E + + KG ++VN
Sbjct: 178 ---SPKASAPY--KFYPSVRELAAESDVLVLSCALTEETRRMVGREVMEALGKGGVLVNV 232
Query: 281 ARGAIMDTQAVADACSSGQVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQL 340
RG ++D + G + G G DV+ +P W M N ++ H + T ++
Sbjct: 233 GRGGLVDEAELVRCLREGVLGGAGLDVYENEPEVPPELW-GMDNVVLSDHRAVITPESIQ 291
Query: 341 RYAAGVKDMLDRYFKGEDFPVQ 362
VK LD +F G+ Q
Sbjct: 292 GVVDVVKANLDAFFSGKPLVSQ 313
>Os06g0655100 Similar to D-3-phosphoglycerate dehydrogenase, chloroplast
precursor (EC 1.1.1.95) (3-PGDH)
Length = 629
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 118/262 (45%), Gaps = 20/262 (7%)
Query: 112 LELLLTAGIGSDHIDLPXXXXXGLTVAEVTGSNTVSVAEDELMRILILLRNFLPGYQQVV 171
L ++ AG+G D++DL G V +NTV+ AE + + + RN +
Sbjct: 135 LRVVGRAGVGIDNVDLQAATEAGCLVVNAPTANTVAAAEHAIALLAAMARNVAQADASLK 194
Query: 172 HGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKIDPELEKEI 231
G+W Y L GKT+ +G G++G + +R K +++ HD + + I
Sbjct: 195 AGKWQRN--KYVGVSLVGKTLAIMGFGKVGSEVARRAKGLGMDIISHDPYA-PVDRARAI 251
Query: 232 GAKYEEDLDAMLPKCDVIVINTPLTEKTRGMFNKERIAKMKKGVIIVNNARGAIMDTQAV 291
G D + D I ++ PLT T +F+ E A MKKGV I+N ARG ++D A+
Sbjct: 252 GVDLVS-FDEAISTADFISLHMPLTPSTAKLFDDETFANMKKGVRIINVARGGVVDEDAL 310
Query: 292 ADACSSGQVAGY----------------GGDVWFPQPAPKDHPWRYMPNHAMTPHISGTT 335
A +G V+ DV+ +P PKD + + +TPH+ +T
Sbjct: 311 LRALDNGTVSQCVLIKGCFSLFPDCFEAALDVFTEEPPPKDSKLVHHEHVTVTPHLGAST 370
Query: 336 IDAQLRYAAGVKDMLDRYFKGE 357
+AQ A + + + KGE
Sbjct: 371 SEAQEGVALEIAEAVLGALKGE 392
>Os04g0107200 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region
domain containing protein
Length = 329
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 119/258 (46%), Gaps = 10/258 (3%)
Query: 101 VSAERIKKAKNLELLLTAGIGSDHIDLPXXXXXGLTVAEVTGSNTVSVAEDELMRILILL 160
V+A + +L ++T G G DHIDL G+ VA + VA+ + ++ +L
Sbjct: 70 VNAAFLDAVPSLGCVVTTGAGVDHIDLAECARRGVAVAGAGTVFSTDVADHAVGLLVDVL 129
Query: 161 RNFLPGYQQVVHGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDR 220
R + V G W G L GK VG +G G IG L+ +RL+ F C + Y+ R
Sbjct: 130 RRISASDRYVRRGLWAARGDYPLGSKLSGKHVGIIGLGSIGSLIAKRLQAFGCTISYNSR 189
Query: 221 LKIDPELEKEIGAKYEEDLDAMLPKCDVIVINTPLTEKTRGMFNKERIAKMKKGVIIVNN 280
D + Y D+ + DV+++ L ++TR + + + + K ++VN
Sbjct: 190 RPKD-----SVSYNYFPDVTDLAAASDVLIVACALNDETRHIVDSSVLEALGKDGVVVNI 244
Query: 281 ARGAIMDTQAVADACSSGQVAGYGGDVWFPQPAPKDHPWRY--MPNHAMTPHISGTTIDA 338
ARG I+D + A G++AG G DV+ +P D P M N +T H + T ++
Sbjct: 245 ARGGIVDEAELIRALKEGRIAGAGLDVFEKEP---DVPAELLSMDNVVLTAHEAVFTTES 301
Query: 339 QLRYAAGVKDMLDRYFKG 356
A + L+ +F G
Sbjct: 302 NWDLADLMIANLEAFFSG 319
>Os04g0107300 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region
domain containing protein
Length = 326
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 125/263 (47%), Gaps = 9/263 (3%)
Query: 98 PAYVSAERIKKAKNLELLLTAGIGSDHIDLPXXXXXGLTVAEVTGSNTVSVAEDELMRIL 157
P V AE + +L ++T G++HIDL G+ VA G + VA+ + +L
Sbjct: 60 PIPVGAELLDAVPSLRCIITVSAGTNHIDLRECARRGVQVANAGGIYSTDVADYAVGLLL 119
Query: 158 ILLRNFLPGYQQVVHG---EWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCN 214
+LR+ G + V G E + G+ VG +G G IG + +RL+ F C
Sbjct: 120 DVLRHVSAGDRFVRRGLCPEQRGGDFLPLGSKIGGRRVGIIGLGSIGSAIARRLEAFGCV 179
Query: 215 LLYHDRLKIDPELEKEIGAKYEEDLDAMLPKCDVIVINTPLTEKTRGMFNKERIAKMKKG 274
+ YH+R + +++ Y + DV+V+ LT +TR + ++ + + +
Sbjct: 180 VSYHNRRR-----REDVAYAYFPTATDLAASSDVLVVACALTAETRRIVDRGVLDALGER 234
Query: 275 VIIVNNARGAIMDTQAVADACSSGQVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISGT 334
++VN ARGA +D + A + G+VAG G +V+ +P W M N +TPH +
Sbjct: 235 GVVVNVARGANVDEAELVRALAEGRVAGAGLEVFDDEPNVPPELW-AMDNVVLTPHQAIF 293
Query: 335 TIDAQLRYAAGVKDMLDRYFKGE 357
T ++ + V LD +F GE
Sbjct: 294 TPESMADLSRVVLANLDAFFAGE 316
>Os07g0264100 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region
domain containing protein
Length = 374
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 142/290 (48%), Gaps = 27/290 (9%)
Query: 58 REWLESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVSAERIKKAKNLELLLT 117
+E+L+S + + D+ GL E+ I++ H+ + + ++ I KA +++++
Sbjct: 69 KEYLQS---YPFIQVDEVGLE-EVPDVIQNYHLCVVKNRR---LDSDTIAKASQMKIIMQ 121
Query: 118 AGIGSDHIDLPXXXXXGLTVAEVTGS---NTVSVAEDELMRILILLRNFLPGYQQVVHGE 174
G+G + +D+ + VA + GS N VS AE + L +LR Q+V+
Sbjct: 122 YGVGLEGVDVNAATEHKIKVARIPGSTTGNAVSCAEMAIYLTLGVLRK-----QKVMDTA 176
Query: 175 WNVAGIAYRAYD-LEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDR--------LKIDP 225
+ D + GK+V +G G IG + +RL+PF +L R ID
Sbjct: 177 VKRKDLGIPVGDTIFGKSVLILGFGAIGVEIAKRLRPFGVKILATKRNWSSDTLPCDIDE 236
Query: 226 ELEKEIGAKYEEDLDAMLPKCDVIVINTPLTEKTRGMFNKERIAKMKKGVIIVNNARGAI 285
++K+ G ED+ + D+++ LT +T G+ + + ++ MKKG +VN ARG +
Sbjct: 237 LVDKKGGP---EDMYEFAGEADIVITCLLLTNETVGIVDHKFLSAMKKGSYLVNIARGRL 293
Query: 286 MDTQAVADACSSGQVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISGTT 335
+D AV + SG + G G DV + +P + P N +TPHI+G T
Sbjct: 294 LDYDAVFNHLKSGHLGGLGIDVAWTEPYDPEDPILKFSNVIITPHIAGVT 343
>Os01g0228600 Similar to 2-hydroxyacid dehydrogenase (AGR_L_379p)
Length = 316
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 123/282 (43%), Gaps = 8/282 (2%)
Query: 81 LEKHIEDMHVLITTPFHPAYVSAERIKKAKNLELLLTAGIGSDHIDLPXXXXXGLTVAEV 140
L H + ++ P+ V A I +LE++ + +G D +DL G+ V
Sbjct: 41 LRAHASSIRAVV--PYALQGVDAAMIDALPSLEIVSSFSVGIDRVDLDACLRRGVRVTNT 98
Query: 141 TGSNTVSVAEDELMRILILLRNFLPGYQQVVHGEWNVAGIAYRAYDLEGKTVGTVGAGRI 200
T VA+ + + LR + V G+W G GK VG +G GRI
Sbjct: 99 PDVLTDDVADLAVGLAIAALRKIPQADRYVRAGKWKSKGDFTLTTRFSGKRVGIIGLGRI 158
Query: 201 GRLLLQRLKPFNCNLLYHDRLKIDPELEKEIGAKYEEDLDAMLPKCDVIVINTPLTEKTR 260
G + +R++ F+C + Y+ R K D G Y + + DV+V+ PL E TR
Sbjct: 159 GLAVAKRVEAFDCPVNYYQRTKQD-----HPGYTYYPSVVELAASSDVLVVACPLNEHTR 213
Query: 261 GMFNKERIAKMKKGVIIVNNARGAIMDTQAVADACSSGQVAGYGGDVWFPQPAPKDHPWR 320
+ N+E + + +++N RG +D A+ A + G++ G G DV+ +P +
Sbjct: 214 HIVNREVMEALGPRGVLINIGRGPHVDEAAMVAALADGRLGGAGLDVFEDEPNVPE-ALL 272
Query: 321 YMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQ 362
M N + PH+ T + + A V L+ + G+ Q
Sbjct: 273 GMDNVVLVPHVGSATHETRTAMADLVLGNLEAHVAGKPLLTQ 314
>Os04g0106400 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region
domain containing protein
Length = 329
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 8/248 (3%)
Query: 111 NLELLLTAGIGSDHIDLPXXXXXGLTVAEVTGSNTVSVAEDELMRILILLRNFLPGYQQV 170
+L +++ G DHIDL G+ VA + VA+ + ++ ++R + V
Sbjct: 80 SLRCVVSTAAGVDHIDLAECARRGVVVANSGTVYSGDVADHAVGMVIDVMRRVSAAERYV 139
Query: 171 VHGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKIDPELEKE 230
G W V G + GK VG +G G IG L+ +RL+ F C + Y+ R +P ++
Sbjct: 140 RRGLWPVQGDYPLGSKVSGKRVGIIGLGNIGSLIAKRLEAFGCVISYNSR---NP--KRS 194
Query: 231 IGAKYEEDLDAMLPKCDVIVINTPLTEKTRGMFNKERIAKMKKGVIIVNNARGAIMDTQA 290
+ Y D+ A+ DV+V++ L +TR + E + + +G ++VN RGA +D A
Sbjct: 195 LPYTYYADVRALAADSDVLVVSCALNSETRHIVGGEVLDALGEGGVVVNVGRGANVDEAA 254
Query: 291 VADACSSGQVAGYGGDVWFPQPAPKDHP-WRYMPNHAMTPHISGTTIDAQLRYAAGVKDM 349
+ A G++AG G DV+ + PK P R M N +TPH++ T +++
Sbjct: 255 LVRALREGRIAGAGLDVF--EGEPKVSPELREMENVVLTPHVAVWTAESRSDLRDHTVAN 312
Query: 350 LDRYFKGE 357
LD +F G+
Sbjct: 313 LDAFFSGD 320
>Os08g0447000 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain
containing protein
Length = 219
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 37/203 (18%)
Query: 171 VHGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKIDPELEKE 230
+ G+W Y L GKT+ +G G++G + +R K +++ HD + +
Sbjct: 6 ITGKWQ--RTKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARA 62
Query: 231 IGAKYEEDLDAMLPKCDVIVINTPLTEKTRGMFNKERIAKMKKGVIIVNNARGAIMDTQA 290
IGA+ D + + D I ++ PLT T +FN E ++MK GV I+N ARG ++D A
Sbjct: 63 IGAELVS-FDEAIGRADFISLHMPLTPATSKVFNDESFSRMKNGVRIINVARGGVIDEDA 121
Query: 291 VADACSSGQVA------------------------GY---------GGDVWFPQPAPKDH 317
+ A SG+VA G+ DV+ +P KD
Sbjct: 122 LVRALDSGKVAQVICNFPYVIRYLLNYQCAIFLKVGFLFLANVDQAALDVFTEEPPAKDS 181
Query: 318 PWRYMPNHAMTPHISGTTIDAQL 340
N +TPH+ +T++AQ+
Sbjct: 182 KLVLHENVTVTPHLGASTVEAQV 204
>Os07g0263400
Length = 273
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 122/281 (43%), Gaps = 40/281 (14%)
Query: 73 DKEGLNSELEKHIEDMHVLITTPFHPAYVSAERIKKAKNLELLLTAGIGSDHIDLPXXXX 132
D+ GL E+ I++ H+ I + ++ I KA +++++ G+G + +D+
Sbjct: 15 DEVGLE-EVPDVIQNYHLCIV---KNRLIDSDIIAKASQMKVIMQYGVGIEGVDVNAATE 70
Query: 133 XGLTVAEVTGS---NTVSVAEDELMRILILLRNFLPGYQQVVHGEWNVAGIAYRAYD-LE 188
+ VA + GS N VS AE + L +LR Q+++ + D +
Sbjct: 71 HKIKVARINGSTTGNAVSCAEMAIYLTLGILRK-----QKMMDTAVKRKDLGSPVGDTIF 125
Query: 189 GKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKIDPELEKEIGAKYEEDLDAMLPKCDV 248
GK V +G G IG + +R++PF +L R + A CD+
Sbjct: 126 GKRVLILGFGAIGVEIAKRIRPFGVKILATKR-----------------NWSAETLPCDI 168
Query: 249 IVINTPLTEKTRG---MFNKERIAKMKKGVIIVNNARGAIMDTQAVADACSSGQVAGYGG 305
L +K G M+ E + G +VN ARG I+D AV D SG + G G
Sbjct: 169 ----DELVDKKGGPEDMY--EFTGEADIGSYLVNIARGHILDYDAVFDHLKSGHLGGLGI 222
Query: 306 DVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGV 346
DV + +P + P N +TPH +G T + R AA V
Sbjct: 223 DVAWTEPYDPEDPILKFSNVIITPHTAGVT-EYSFRAAAKV 262
>Os02g0101500 Similar to NADH-dependent hydroxypyruvate reductase (EC 1.1.1.29)
(Fragment)
Length = 386
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 18/165 (10%)
Query: 187 LEGKTVGTVGAGRIGRLLLQRL-KPFNCNLLYHDRLKIDPELEKEIGA------------ 233
L+G+TVG +GAGRIG + + + F NL+Y+D L LEK + A
Sbjct: 163 LKGQTVGVIGAGRIGSAYARMMIEGFKMNLIYYD-LYQSTRLEKFVTAYGQFLKANGEQP 221
Query: 234 ---KYEEDLDAMLPKCDVIVINTPLTEKTRGMFNKERIAKMKKGVIIVNNARGAIMDTQA 290
K ++ +L + DVI ++ L + T + N ER+A MKK ++VN +RG ++D A
Sbjct: 222 VTWKRAATMEDVLREADVISLHPVLDKTTYHLINPERLAIMKKEAVLVNASRGPVIDEVA 281
Query: 291 VADACSSGQVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISGTT 335
+ + + + G DV+ +P K M N + PHI+ +
Sbjct: 282 LVEHLKANPMFRVGLDVFEDEPYMKPG-LADMKNAVVVPHIASAS 325
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,126,629
Number of extensions: 509739
Number of successful extensions: 1242
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 1226
Number of HSP's successfully gapped: 14
Length of query: 376
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 274
Effective length of database: 11,709,973
Effective search space: 3208532602
Effective search space used: 3208532602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)