Os04g0107500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region domain containing protein.
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Os04g0107500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.29 | 0.298 | 10.3 | 1.19 | 0.644 | -50.2 | 0.0251 | -103 | 0.47 | 6.03 | 14.92 | 1341 | -- | -- |
| 42.39 | 0.306 | 10.8 | 2.3 | 0.665 | -1.5 | -0.189 | -- | 0.492 | 5.93 | 14.92 | 1341 | -- | -- |
| 40.28 | 0.296 | 10.4 | 1.23 | 0.647 | -50.1 | -- | -103 | 0.475 | 6.02 | 14.89 | 1342 | -- | -- |
| 40.66 | 0.297 | 10.8 | 2.24 | 0.65 | -1.7 | -- | -- | 0.48 | 6 | 14.8 | 1346 | -- | -- |
| 61.77 | 0.366 | 10.3 | 1.19 | -- | -50 | -- | -102 | 0.482 | -- | 14.94 | 1335 | -- | -- |
| 46.76 | 0.321 | 10.8 | 2.36 | 0.665 | -- | -0.164 | -- | 0.508 | 6.1 | -- | -- | -- | -- |
| 46.82 | 0.32 | 10.8 | 2.36 | 0.664 | -- | -- | -- | 0.508 | 6.12 | -- | -- | -- | -- |
| 62.63 | 0.369 | 10.8 | 2.24 | -- | -1.79 | -- | -- | 0.492 | -- | 14.84 | 1346 | -- | -- |
| 74.77 | 0.403 | 11 | -- | 0.664 | -1.81 | -- | -- | -0.179 | 6.25 | 21.8 | 47520 | -- | -- |
| 69.67 | 0.39 | 10.8 | 2.38 | -- | -- | -- | -- | 0.523 | -- | -- | -- | -- | -- |
| 193.39 | 0.651 | 10.9 | -- | 0.699 | -- | -- | -- | 0.246 | 5.95 | -- | -- | -- | -- |
| 97.62 | 0.46 | 11 | -- | -- | -1.82 | -- | -- | -0.173 | -- | 21.88 | 47520 | -- | -- |
| 218.71 | 0.69 | 10.9 | -- | -- | -- | -- | -- | 0.259 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.22 | temperature | 15 | 1440 | > th | dose independent | rect. | 6 | 18 |
| 3 | 39.54 | temperature | 15 | 720 | > th | dose independent | rect. | 19 | 7 |
| 4 | 39.61 | temperature | 15 | 1440 | > th | dose independent | sin | 1 | NA |
| 6 | 39.74 | temperature | 15 | 1440 | > th | dose independent | rect. | 6 | 20 |
| 8 | 39.78 | temperature | 15 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 12 | 39.93 | temperature | 15 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 14 | 39.97 | temperature | 15 | 720 | < th | dose independent | rect. | 3 | 16 |
| 19 | 40.00 | temperature | 15 | 720 | < th | dose independent | rect. | 4 | 14 |
| 20 | 40.01 | temperature | 15 | 720 | < th | dose independent | sin | 1 | NA |
| 22 | 40.03 | temperature | 15 | 720 | < th | dose independent | rect. | 4 | 11 |
| 25 | 40.05 | temperature | 15 | 720 | < th | dose dependent | rect. | 2 | 17 |
| 27 | 40.09 | temperature | 15 | 720 | < th | dose independent | rect. | 2 | 20 |
| 29 | 40.10 | temperature | 15 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 30 | 40.11 | temperature | 15 | 720 | < th | dose independent | rect. | 1 | 22 |
| 35 | 40.14 | temperature | 15 | 1440 | > th | dose independent | rect. | 3 | 21 |
| 38 | 40.16 | temperature | 15 | 720 | < th | dose dependent | rect. | 1 | 20 |
| 42 | 40.20 | temperature | 15 | 1440 | > th | dose independent | sin | 19 | NA |
| 49 | 40.23 | temperature | 20 | 720 | < th | dose dependent | rect. | 11 | 2 |
| 50 | 40.24 | temperature | 15 | 720 | < th | dose dependent | sin | 1 | NA |
| 51 | 40.24 | temperature | 20 | 720 | < th | dose dependent | rect. | 9 | 6 |
| 55 | 40.29 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 58 | 40.30 | temperature | 15 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 72 | 40.30 | temperature | 15 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 85 | 40.31 | temperature | 15 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 88 | 40.32 | temperature | 15 | 1440 | < th | dose independent | rect. | 4 | 21 |
| 94 | 40.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 96 | 40.34 | temperature | 15 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 100 | 40.36 | temperature | 15 | 1440 | < th | dose dependent | rect. | 4 | 21 |
| 103 | 40.40 | temperature | 15 | 1440 | < th | dose independent | sin | 17 | NA |
| 109 | 40.41 | temperature | 15 | 1440 | > th | dose independent | rect. | 3 | 14 |
| 114 | 40.41 | temperature | 15 | 1440 | < th | dose dependent | sin | 15 | NA |
| 136 | 40.43 | temperature | 15 | 720 | > th | dose independent | rect. | 13 | 8 |
| 137 | 40.43 | humidity | 90 | 90 | < th | dose independent | rect. | 19 | 13 |
| 145 | 40.43 | temperature | 20 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 167 | 40.44 | temperature | 15 | 1440 | < th | dose dependent | rect. | 13 | 16 |
| 177 | 40.45 | temperature | 15 | 1440 | < th | dose dependent | no | NA | NA |
| 211 | 40.45 | temperature | 15 | 1440 | < th | dose dependent | rect. | 17 | 21 |
| 326 | 40.48 | temperature | 15 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 345 | 40.50 | temperature | 15 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 356 | 40.52 | temperature | 15 | 1440 | > th | dose independent | rect. | 12 | 14 |
| 364 | 40.53 | temperature | 15 | 1440 | > th | dose independent | rect. | 10 | 16 |
| 381 | 40.55 | temperature | 15 | 1440 | > th | dose independent | rect. | 10 | 14 |
| 386 | 40.55 | temperature | 15 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 398 | 40.56 | temperature | 15 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 399 | 40.56 | temperature | 15 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 409 | 40.58 | temperature | 15 | 1440 | > th | dose independent | no | NA | NA |
| 423 | 40.59 | temperature | 15 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 439 | 40.60 | temperature | 15 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 442 | 40.61 | temperature | 15 | 1440 | < th | dose independent | no | NA | NA |
| 459 | 40.61 | temperature | 15 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 512 | 40.63 | temperature | 15 | 1440 | < th | dose dependent | rect. | 3 | 8 |
| 518 | 40.64 | temperature | 15 | 1440 | > th | dose independent | rect. | 20 | 21 |
| 698 | 40.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 7 |
| 725 | 40.70 | temperature | 15 | 1440 | > th | dose independent | rect. | 12 | 21 |
| 733 | 40.71 | temperature | 15 | 1440 | > th | dose independent | rect. | 1 | 18 |
| 837 | 40.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 17 |