BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0107500 Os04g0107500|AK102907
(316 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G12550.1 | chr1:4274649-4275831 FORWARD LENGTH=324 255 3e-68
AT2G45630.2 | chr2:18796000-18797089 FORWARD LENGTH=339 221 3e-58
AT1G79870.1 | chr1:30044794-30045851 FORWARD LENGTH=314 188 3e-48
AT5G28310.1 | chr5:10300117-10301844 REVERSE LENGTH=234 60 2e-09
AT5G14780.1 | chr5:4777043-4779190 FORWARD LENGTH=385 56 3e-08
AT4G34200.1 | chr4:16374041-16376561 REVERSE LENGTH=604 49 5e-06
>AT1G12550.1 | chr1:4274649-4275831 FORWARD LENGTH=324
Length = 323
Score = 255 bits (651), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 129/260 (49%), Positives = 163/260 (62%)
Query: 57 PVSADLVARLPKLEIVVATSTGVDHIDLDACRRRGISVTNAGEVFAPDVADYXXXXXXXX 116
PV+ +L++ LP L+I+V TS G+DHIDL AC+RRGI +TNAG F+ DVAD
Sbjct: 63 PVTDELLSHLPSLQILVCTSVGIDHIDLAACKRRGIVITNAGNAFSDDVADCAVGLLISV 122
Query: 117 XXXXXXXXXXXXXGRWAADGDYPLATKVSGKRXXXXXXXXXXXXXARRLAAFGCVIAYNS 176
G WA GD+ L +KVSGKR A+RL +FGCVI+YNS
Sbjct: 123 LRRIPAADRYVRSGNWAKFGDFQLGSKVSGKRVGIVGLGSIGSFVAKRLESFGCVISYNS 182
Query: 177 RSPKASAPYKFYPSVRELAAESDVLVLSCALTEETRRMVGREVMEAXXXXXXXXXXXXXX 236
RS K S+PY++Y + LA +DVLVL C+LT+ET +V REVME
Sbjct: 183 RSQKQSSPYRYYSDILSLAENNDVLVLCCSLTDETHHIVNREVMELLGKDGVVINVGRGK 242
Query: 237 XXDEAELVRCLREGVLGGAGLDVYENEPEVPPELWGMDNVVLSDHRAVITPESIQGVVDV 296
DE E+V+CL +GV+GGAGLDV+ENEP VP EL+G+DNVVLS H AV TP S+ V +
Sbjct: 243 LIDEKEMVKCLVDGVIGGAGLDVFENEPAVPQELFGLDNVVLSPHFAVATPGSLDNVAQI 302
Query: 297 VKANLDAFFSGKPLVSQVQL 316
ANL AFFS +PL+S VQL
Sbjct: 303 ALANLKAFFSNRPLLSPVQL 322
>AT2G45630.2 | chr2:18796000-18797089 FORWARD LENGTH=339
Length = 338
Score = 221 bits (564), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 116/266 (43%), Positives = 153/266 (57%), Gaps = 1/266 (0%)
Query: 50 VLVPALTPVSADLVARLPKLEIVVATSTGVDHIDLDACRRRGISVTNAGEVFAPDVADYX 109
++ P PV+ADL+ LP L +VV TS GVDH+DL CRRRGISV NAG F+ DVAD
Sbjct: 72 IIAPVAAPVTADLIRILPNLRLVVTTSAGVDHVDLVECRRRGISVANAGSSFSEDVADTA 131
Query: 110 XXXXXXXXXXXXXXXXXXXXGRWAADGDYPLATKVSGKRXXXXXXXXXXXXXARRLAAFG 169
W GDYPL +K+ KR A RL AFG
Sbjct: 132 VGLLIDVFRRISAANRFVKQRFWPLKGDYPLGSKLGRKRIGIVGLGSIGSKVATRLDAFG 191
Query: 170 CVIAYNSRSPK-ASAPYKFYPSVRELAAESDVLVLSCALTEETRRMVGREVMEAXXXXXX 228
C I+Y+SR+ K PY +Y + E+AA SD L++ C L E+T R++ ++V+ A
Sbjct: 192 CQISYSSRNRKPYDVPYHYYMDIEEMAANSDALIICCELNEKTLRLINKDVLSALGKRGV 251
Query: 229 XXXXXXXXXXDEAELVRCLREGVLGGAGLDVYENEPEVPPELWGMDNVVLSDHRAVITPE 288
DE E+VRCLREG +GGAGLDV+E+EP VP EL+ +DNVV S H A +T E
Sbjct: 252 IVNVARGAIIDEEEMVRCLREGEIGGAGLDVFEDEPNVPKELFELDNVVFSPHSAFMTLE 311
Query: 289 SIQGVVDVVKANLDAFFSGKPLVSQV 314
++ + VV N++AFFS KPL++ V
Sbjct: 312 GLEELGKVVVGNIEAFFSNKPLLTPV 337
>AT1G79870.1 | chr1:30044794-30045851 FORWARD LENGTH=314
Length = 313
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/255 (41%), Positives = 140/255 (54%), Gaps = 1/255 (0%)
Query: 60 ADLVARLPKLEIVVATSTGVDHIDLDACRRRGISVTNAGEVFAPDVADYXXXXXXXXXXX 119
A L++ LP LEIV + S G+D IDL C+ +GI VTN +V DVAD
Sbjct: 59 AQLISDLPNLEIVSSFSVGLDKIDLGKCKEKGIRVTNTPDVLTEDVADLAIGLILALLRR 118
Query: 120 XXXXXXXXXXGRWAADGDYPLATKVSGKRXXXXXXXXXXXXXARRLAAFGCVIAYNSRSP 179
G+W G++ L TK SGK A+R AF C I Y SR+
Sbjct: 119 LCECDRYVRSGKWK-QGEFQLTTKFSGKSVGIIGLGRIGTAIAKRAEAFSCPINYYSRTI 177
Query: 180 KASAPYKFYPSVRELAAESDVLVLSCALTEETRRMVGREVMEAXXXXXXXXXXXXXXXXD 239
K YK+YP+V +LA SD+LV++C LTE+TR +V R+VM+A D
Sbjct: 178 KPDVAYKYYPTVVDLAQNSDILVVACPLTEQTRHIVDRQVMDALGAKGVLINIGRGPHVD 237
Query: 240 EAELVRCLREGVLGGAGLDVYENEPEVPPELWGMDNVVLSDHRAVITPESIQGVVDVVKA 299
E EL++ L EG LGGA LDV+E EP VP EL+G++NVVL H T E+ + D+V
Sbjct: 238 EQELIKALTEGRLGGAALDVFEQEPHVPEELFGLENVVLLPHVGSGTVETRNAMADLVVG 297
Query: 300 NLDAFFSGKPLVSQV 314
NL+A FSGK L++ V
Sbjct: 298 NLEAHFSGKSLLTPV 312
>AT5G28310.1 | chr5:10300117-10301844 REVERSE LENGTH=234
Length = 233
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 52/154 (33%)
Query: 162 ARRLAAFGCVIAYNSRSPKASA-PYKFYPSVRELAAESDVLVLSCALTEETRRMVGREVM 220
A RL AFGC I+Y+SR+ K A PY +Y + E+ ++++ AL
Sbjct: 130 ATRLKAFGCQISYSSRNRKPYAVPYHYYMDIEEMHG----VIVNVAL------------- 172
Query: 221 EAXXXXXXXXXXXXXXXXDEAELVRCLREGVLGGAGLDVYENEPEVPPELWGMDNVVLSD 280
GA +D E VP EL+ +DNVV S
Sbjct: 173 ---------------------------------GAIIDE-EEMSNVPKELFELDNVVFSP 198
Query: 281 HRAVITPESIQGVVDVVKANLDAFFSGKPLVSQV 314
H A +T E ++ + VV N++AFFS KPL++ V
Sbjct: 199 HCAFMTLEGLEELGKVVVGNIEAFFSNKPLLTPV 232
>AT5G14780.1 | chr5:4777043-4779190 FORWARD LENGTH=385
Length = 384
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 97/257 (37%), Gaps = 6/257 (2%)
Query: 58 VSADLVARLPKLEIVVATSTGVDHIDLDACRRRGISVTNAGEVFAPDVADYXXXXXXXXX 117
V+A+ + + L++++ G DHIDL A G++V VA+
Sbjct: 109 VTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILM 168
Query: 118 XXXXXXXXXXXXGRWAADGDYPLATKVSGKRXXXXXXXXXXXXXARRLAAFGCVIAYNSR 177
G W G A + GK +RL FGC + Y+ R
Sbjct: 169 RNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDR 228
Query: 178 SPKA-----SAPYKFYPSVRELAAESDVLVLSCALTEETRRMVGREVMEAXXXXXXXXXX 232
A KF + E+ + DV+V++ LTE+TR M +E++
Sbjct: 229 LQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNN 288
Query: 233 XXXXXXDEAELVRCLREGVLGGAGLDVYENEPEVPPELWG-MDNVVLSDHRAVITPESIQ 291
+ +V + G +GG DV++ +P W M N ++ H + T ++
Sbjct: 289 ARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQL 348
Query: 292 GVVDVVKANLDAFFSGK 308
K L+ +F G+
Sbjct: 349 RYAAGTKDMLERYFKGE 365
>AT4G34200.1 | chr4:16374041-16376561 REVERSE LENGTH=604
Length = 603
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 85/230 (36%), Gaps = 6/230 (2%)
Query: 68 KLEIVVATSTGVDHIDLDACRRRGISVTNAGEVFAPDVADYXXXXXXXXXXXXXXXXXXX 127
+L++V G+D++DL A G V NA A++
Sbjct: 124 RLKVVGRAGVGIDNVDLSAATEFGCLVVNAPTANTIAAAEHGIALMAAMARNVAQADASV 183
Query: 128 XXGRWAADGDYPLATKVSGKRXXXXXXXXXXXXXARRLAAFGC-VIAYNSRSP--KASAP 184
G W + Y + + GK ARR G VIA++ +P +A A
Sbjct: 184 KAGEWKRN-KY-VGVSLVGKTLAVLGFGKVGTEVARRAKGLGMRVIAHDPYAPADRAHAI 241
Query: 185 YKFYPSVRELAAESDVLVLSCALTEETRRMVGREVMEAXXXXXXXXXXXXXXXXDEAELV 244
S E A +D + L LT T +++ E DE LV
Sbjct: 242 GVDLVSFDEALATADFISLHMPLTPTTSKILNDETFAKMKKGVRIVNVARGGVIDEDALV 301
Query: 245 RCLREGVLGGAGLDVYENEPEVP-PELWGMDNVVLSDHRAVITPESIQGV 293
R L G++ A LDV+ EP +L + V ++ H T E+ +GV
Sbjct: 302 RALDAGIVAQAALDVFTKEPPAKDSKLVQHERVTVTPHLGASTMEAQEGV 351
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,239,958
Number of extensions: 163177
Number of successful extensions: 294
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 6
Length of query: 316
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 217
Effective length of database: 8,392,385
Effective search space: 1821147545
Effective search space used: 1821147545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)