BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0107500 Os04g0107500|AK102907
(316 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0107500 D-isomer specific 2-hydroxyacid dehydrogenase,... 480 e-136
Os04g0106400 D-isomer specific 2-hydroxyacid dehydrogenase,... 240 1e-63
Os04g0107200 D-isomer specific 2-hydroxyacid dehydrogenase,... 234 4e-62
Os04g0107300 D-isomer specific 2-hydroxyacid dehydrogenase,... 218 6e-57
Os01g0228600 Similar to 2-hydroxyacid dehydrogenase (AGR_L_... 202 4e-52
>Os04g0107500 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region
domain containing protein
Length = 316
Score = 480 bits (1236), Expect = e-136, Method: Compositional matrix adjust.
Identities = 252/316 (79%), Positives = 252/316 (79%)
Query: 1 MVAPSPDAGKPLVILLRPLYPEFAAALDGRFRFVLXXXXXXXXXXXXXXVLVPALTPVSA 60
MVAPSPDAGKPLVILLRPLYPEFAAALDGRFRFVL VLVPALTPVSA
Sbjct: 1 MVAPSPDAGKPLVILLRPLYPEFAAALDGRFRFVLAADADEGNAAEARAVLVPALTPVSA 60
Query: 61 DLVARLPKLEIVVATSTGVDHIDLDACRRRGISVTNAGEVFAPDVADYXXXXXXXXXXXX 120
DLVARLPKLEIVVATSTGVDHIDLDACRRRGISVTNAGEVFAPDVADY
Sbjct: 61 DLVARLPKLEIVVATSTGVDHIDLDACRRRGISVTNAGEVFAPDVADYAVGLVVAVLRRV 120
Query: 121 XXXXXXXXXGRWAADGDYPLATKVSGKRXXXXXXXXXXXXXARRLAAFGCVIAYNSRSPK 180
GRWAADGDYPLATKVSGKR ARRLAAFGCVIAYNSRSPK
Sbjct: 121 AAAEAYLRRGRWAADGDYPLATKVSGKRVGIVGLGSIGGLVARRLAAFGCVIAYNSRSPK 180
Query: 181 ASAPYKFYPSVRELAAESDVLVLSCALTEETRRMVGREVMEAXXXXXXXXXXXXXXXXDE 240
ASAPYKFYPSVRELAAESDVLVLSCALTEETRRMVGREVMEA DE
Sbjct: 181 ASAPYKFYPSVRELAAESDVLVLSCALTEETRRMVGREVMEALGKGGVLVNVGRGGLVDE 240
Query: 241 AELVRCLREGVLGGAGLDVYENEPEVPPELWGMDNVVLSDHRAVITPESIQGVVDVVKAN 300
AELVRCLREGVLGGAGLDVYENEPEVPPELWGMDNVVLSDHRAVITPESIQGVVDVVKAN
Sbjct: 241 AELVRCLREGVLGGAGLDVYENEPEVPPELWGMDNVVLSDHRAVITPESIQGVVDVVKAN 300
Query: 301 LDAFFSGKPLVSQVQL 316
LDAFFSGKPLVSQVQL
Sbjct: 301 LDAFFSGKPLVSQVQL 316
>Os04g0106400 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region
domain containing protein
Length = 329
Score = 240 bits (612), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 145/328 (44%), Positives = 177/328 (53%), Gaps = 12/328 (3%)
Query: 1 MVAPSPDAGKPLVILLRPLYPEFAAALDGRFRFV------------LXXXXXXXXXXXXX 48
M +PS P V+LLRP+ FA AL R+R + L
Sbjct: 1 MASPSGAGKPPAVLLLRPVDQPFAVALRERYRVLDLLSSGQPLPAFLAAAAAAPDPPRAA 60
Query: 49 XVLVPALTPVSADLVARLPKLEIVVATSTGVDHIDLDACRRRGISVTNAGEVFAPDVADY 108
V+ A L +P L VV+T+ GVDHIDL C RRG+ V N+G V++ DVAD+
Sbjct: 61 VVMGGGSIRADAALFDAVPSLRCVVSTAAGVDHIDLAECARRGVVVANSGTVYSGDVADH 120
Query: 109 XXXXXXXXXXXXXXXXXXXXXGRWAADGDYPLATKVSGKRXXXXXXXXXXXXXARRLAAF 168
G W GDYPL +KVSGKR A+RL AF
Sbjct: 121 AVGMVIDVMRRVSAAERYVRRGLWPVQGDYPLGSKVSGKRVGIIGLGNIGSLIAKRLEAF 180
Query: 169 GCVIAYNSRSPKASAPYKFYPSVRELAAESDVLVLSCALTEETRRMVGREVMEAXXXXXX 228
GCVI+YNSR+PK S PY +Y VR LAA+SDVLV+SCAL ETR +VG EV++A
Sbjct: 181 GCVISYNSRNPKRSLPYTYYADVRALAADSDVLVVSCALNSETRHIVGGEVLDALGEGGV 240
Query: 229 XXXXXXXXXXDEAELVRCLREGVLGGAGLDVYENEPEVPPELWGMDNVVLSDHRAVITPE 288
DEA LVR LREG + GAGLDV+E EP+V PEL M+NVVL+ H AV T E
Sbjct: 241 VVNVGRGANVDEAALVRALREGRIAGAGLDVFEGEPKVSPELREMENVVLTPHVAVWTAE 300
Query: 289 SIQGVVDVVKANLDAFFSGKPLVSQVQL 316
S + D ANLDAFFSG PL++ V L
Sbjct: 301 SRSDLRDHTVANLDAFFSGDPLLTPVML 328
>Os04g0107200 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region
domain containing protein
Length = 329
Score = 234 bits (598), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 137/326 (42%), Positives = 174/326 (53%), Gaps = 12/326 (3%)
Query: 1 MVAPSPDAGKPLVILLRPLYPEFAAALDGRFRFV------------LXXXXXXXXXXXXX 48
+ AP GK V+LLR + AA L RFR + L
Sbjct: 1 VAAPPATGGKRPVLLLRRINDRLAAELRSRFRVLNFYESSAPLLAFLAAAAAGPDPPLAA 60
Query: 49 XVLVPALTPVSADLVARLPKLEIVVATSTGVDHIDLDACRRRGISVTNAGEVFAPDVADY 108
V+ V+A + +P L VV T GVDHIDL C RRG++V AG VF+ DVAD+
Sbjct: 61 VVVAGGAIQVNAAFLDAVPSLGCVVTTGAGVDHIDLAECARRGVAVAGAGTVFSTDVADH 120
Query: 109 XXXXXXXXXXXXXXXXXXXXXGRWAADGDYPLATKVSGKRXXXXXXXXXXXXXARRLAAF 168
G WAA GDYPL +K+SGK A+RL AF
Sbjct: 121 AVGLLVDVLRRISASDRYVRRGLWAARGDYPLGSKLSGKHVGIIGLGSIGSLIAKRLQAF 180
Query: 169 GCVIAYNSRSPKASAPYKFYPSVRELAAESDVLVLSCALTEETRRMVGREVMEAXXXXXX 228
GC I+YNSR PK S Y ++P V +LAA SDVL+++CAL +ETR +V V+EA
Sbjct: 181 GCTISYNSRRPKDSVSYNYFPDVTDLAAASDVLIVACALNDETRHIVDSSVLEALGKDGV 240
Query: 229 XXXXXXXXXXDEAELVRCLREGVLGGAGLDVYENEPEVPPELWGMDNVVLSDHRAVITPE 288
DEAEL+R L+EG + GAGLDV+E EP+VP EL MDNVVL+ H AV T E
Sbjct: 241 VVNIARGGIVDEAELIRALKEGRIAGAGLDVFEKEPDVPAELLSMDNVVLTAHEAVFTTE 300
Query: 289 SIQGVVDVVKANLDAFFSGKPLVSQV 314
S + D++ ANL+AFFSG PL++ V
Sbjct: 301 SNWDLADLMIANLEAFFSGGPLLTPV 326
>Os04g0107300 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region
domain containing protein
Length = 326
Score = 218 bits (554), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 114/262 (43%), Positives = 158/262 (60%), Gaps = 3/262 (1%)
Query: 57 PVSADLVARLPKLEIVVATSTGVDHIDLDACRRRGISVTNAGEVFAPDVADYXXXXXXXX 116
PV A+L+ +P L ++ S G +HIDL C RRG+ V NAG +++ DVADY
Sbjct: 62 PVGAELLDAVPSLRCIITVSAGTNHIDLRECARRGVQVANAGGIYSTDVADYAVGLLLDV 121
Query: 117 XXXXXXXXXXXXXGRWAAD--GDY-PLATKVSGKRXXXXXXXXXXXXXARRLAAFGCVIA 173
G GD+ PL +K+ G+R ARRL AFGCV++
Sbjct: 122 LRHVSAGDRFVRRGLCPEQRGGDFLPLGSKIGGRRVGIIGLGSIGSAIARRLEAFGCVVS 181
Query: 174 YNSRSPKASAPYKFYPSVRELAAESDVLVLSCALTEETRRMVGREVMEAXXXXXXXXXXX 233
Y++R + Y ++P+ +LAA SDVLV++CALT ETRR+V R V++A
Sbjct: 182 YHNRRRREDVAYAYFPTATDLAASSDVLVVACALTAETRRIVDRGVLDALGERGVVVNVA 241
Query: 234 XXXXXDEAELVRCLREGVLGGAGLDVYENEPEVPPELWGMDNVVLSDHRAVITPESIQGV 293
DEAELVR L EG + GAGL+V+++EP VPPELW MDNVVL+ H+A+ TPES+ +
Sbjct: 242 RGANVDEAELVRALAEGRVAGAGLEVFDDEPNVPPELWAMDNVVLTPHQAIFTPESMADL 301
Query: 294 VDVVKANLDAFFSGKPLVSQVQ 315
VV ANLDAFF+G+PL+++V+
Sbjct: 302 SRVVLANLDAFFAGEPLLTRVE 323
>Os01g0228600 Similar to 2-hydroxyacid dehydrogenase (AGR_L_379p)
Length = 316
Score = 202 bits (513), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 113/261 (43%), Positives = 144/261 (55%)
Query: 54 ALTPVSADLVARLPKLEIVVATSTGVDHIDLDACRRRGISVTNAGEVFAPDVADYXXXXX 113
AL V A ++ LP LEIV + S G+D +DLDAC RRG+ VTN +V DVAD
Sbjct: 55 ALQGVDAAMIDALPSLEIVSSFSVGIDRVDLDACLRRGVRVTNTPDVLTDDVADLAVGLA 114
Query: 114 XXXXXXXXXXXXXXXXGRWAADGDYPLATKVSGKRXXXXXXXXXXXXXARRLAAFGCVIA 173
G+W + GD+ L T+ SGKR A+R+ AF C +
Sbjct: 115 IAALRKIPQADRYVRAGKWKSKGDFTLTTRFSGKRVGIIGLGRIGLAVAKRVEAFDCPVN 174
Query: 174 YNSRSPKASAPYKFYPSVRELAAESDVLVLSCALTEETRRMVGREVMEAXXXXXXXXXXX 233
Y R+ + Y +YPSV ELAA SDVLV++C L E TR +V REVMEA
Sbjct: 175 YYQRTKQDHPGYTYYPSVVELAASSDVLVVACPLNEHTRHIVNREVMEALGPRGVLINIG 234
Query: 234 XXXXXDEAELVRCLREGVLGGAGLDVYENEPEVPPELWGMDNVVLSDHRAVITPESIQGV 293
DEA +V L +G LGGAGLDV+E+EP VP L GMDNVVL H T E+ +
Sbjct: 235 RGPHVDEAAMVAALADGRLGGAGLDVFEDEPNVPEALLGMDNVVLVPHVGSATHETRTAM 294
Query: 294 VDVVKANLDAFFSGKPLVSQV 314
D+V NL+A +GKPL++QV
Sbjct: 295 ADLVLGNLEAHVAGKPLLTQV 315
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,737,222
Number of extensions: 288064
Number of successful extensions: 578
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 571
Number of HSP's successfully gapped: 5
Length of query: 316
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 215
Effective length of database: 11,762,187
Effective search space: 2528870205
Effective search space used: 2528870205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)