Os01g0228600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 2-hydroxyacid dehydrogenase (AGR_L_379p).
FiT-DB / Search/ Help/ Sample detail
|
Os01g0228600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to 2-hydroxyacid dehydrogenase (AGR_L_379p).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.74 | 0.285 | 13 | -0.6 | 1.34 | -0.07 | 1.17 | -4.51 | -0.415 | 7.28 | 29.62 | 878 | -- | -- |
| 40.26 | 0.296 | 13.1 | -1.22 | 1.26 | -0.365 | 0.655 | -- | -0.453 | 7.06 | 30.4 | 1065 | -- | -- |
| 40.41 | 0.296 | 13 | -0.6 | 1.34 | -0.07 | -- | -3.86 | -0.415 | 7.28 | 29.62 | 878 | -- | -- |
| 41.1 | 0.299 | 13.1 | -1.24 | 1.27 | -0.42 | -- | -- | -0.466 | 7.32 | 30.3 | 1065 | -- | -- |
| 121.54 | 0.513 | 13 | -0.445 | -- | -0.05 | -- | -3.17 | -0.361 | -- | 29.6 | 1356 | -- | -- |
| 47.72 | 0.324 | 13.1 | -1.15 | 1.26 | -- | 0.746 | -- | -0.539 | 7.11 | -- | -- | -- | -- |
| 49.19 | 0.328 | 13.1 | -1.14 | 1.26 | -- | -- | -- | -0.541 | 7.12 | -- | -- | -- | -- |
| 125.29 | 0.521 | 13.1 | -1.22 | -- | -0.392 | -- | -- | -0.435 | -- | 30.9 | 2811 | -- | -- |
| 80.35 | 0.417 | 13.1 | -- | 1.29 | -0.289 | -- | -- | -0.362 | 7.27 | 30.77 | 930 | -- | -- |
| 132.86 | 0.539 | 13.1 | -1.11 | -- | -- | -- | -- | -0.518 | -- | -- | -- | -- | -- |
| 83.3 | 0.427 | 13.1 | -- | 1.25 | -- | -- | -- | -0.414 | 7.17 | -- | -- | -- | -- |
| 161.07 | 0.591 | 13.1 | -- | -- | -0.275 | -- | -- | -0.347 | -- | 30.64 | 5750 | -- | -- |
| 165.57 | 0.601 | 13.1 | -- | -- | -- | -- | -- | -0.395 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.31 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 2 | 36.35 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 7 | 37.02 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 6 |
| 18 | 37.19 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 19 | 37.19 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 21 | 37.20 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 53 | 37.33 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 54 | 37.33 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 55 | 37.33 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 73 | 37.40 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 19 | NA |
| 173 | 37.61 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 2 |
| 174 | 37.61 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 176 | 37.61 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 10 |
| 181 | 37.61 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 22 |
| 186 | 37.62 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 9 |
| 187 | 37.62 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 10 |
| 188 | 37.62 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 14 |
| 189 | 37.62 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 191 | 37.62 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 10 |
| 211 | 37.66 | temperature | 30.0 | 720 | > th | dose independent | rect. | 11 | 8 |
| 241 | 37.71 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 245 | 37.71 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 12 |
| 246 | 37.71 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 12 |
| 268 | 37.75 | temperature | 30.0 | 720 | > th | dose independent | sin | 18 | NA |
| 309 | 37.81 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 338 | 37.83 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 15 | 18 |
| 340 | 37.84 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 341 | 37.84 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 369 | 37.87 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 14 |
| 374 | 37.88 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 377 | 37.88 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 14 |
| 380 | 37.88 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 14 |
| 392 | 37.89 | temperature | 30.0 | 720 | < th | dose independent | rect. | 6 | 14 |
| 429 | 37.92 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 14 |
| 432 | 37.92 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 16 |
| 435 | 37.92 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 14 |
| 436 | 37.92 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 16 |
| 440 | 37.93 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 14 |
| 447 | 37.94 | humidity | 60.0 | 14400 | > th | dose independent | sin | 17 | NA |
| 450 | 37.94 | wind | 5.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 451 | 37.94 | wind | 5.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 472 | 37.97 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 12 |
| 478 | 37.97 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 482 | 37.98 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 490 | 37.99 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 7 |
| 516 | 37.99 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 22 |
| 520 | 37.99 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 578 | 38.03 | temperature | 30.0 | 720 | < th | dose independent | rect. | 14 | 20 |
| 600 | 38.05 | temperature | 30.0 | 720 | < th | dose independent | no | NA | NA |
| 607 | 38.05 | temperature | 30.0 | 720 | < th | dose independent | rect. | 13 | 23 |
| 637 | 38.06 | temperature | 30.0 | 720 | < th | dose independent | rect. | 21 | 23 |
| 652 | 38.07 | temperature | 30.0 | 720 | < th | dose independent | rect. | 5 | 16 |
| 659 | 38.08 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 20 | NA |
| 660 | 38.08 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 20 | NA |
| 661 | 38.08 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 666 | 38.08 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 20 | NA |
| 687 | 38.10 | temperature | 30.0 | 720 | < th | dose independent | sin | 23 | NA |
| 689 | 38.10 | humidity | 50.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 737 | 38.11 | temperature | 30.0 | 720 | > th | dose independent | no | NA | NA |
| 739 | 38.11 | humidity | 60.0 | 14400 | > th | dose independent | no | NA | NA |
| 901 | 38.12 | temperature | 30.0 | 720 | > th | dose independent | rect. | 15 | 23 |
| 902 | 38.12 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 919 | 38.14 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 18 |
| 982 | 38.18 | temperature | 30.0 | 720 | < th | dose independent | rect. | 8 | 10 |