BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0228600 Os01g0228600|AK069655
(316 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0228600 Similar to 2-hydroxyacid dehydrogenase (AGR_L_... 532 e-151
Os04g0107200 D-isomer specific 2-hydroxyacid dehydrogenase,... 213 2e-55
Os04g0107500 D-isomer specific 2-hydroxyacid dehydrogenase,... 211 6e-55
Os04g0107300 D-isomer specific 2-hydroxyacid dehydrogenase,... 187 1e-47
Os04g0106400 D-isomer specific 2-hydroxyacid dehydrogenase,... 176 2e-44
Os02g0101500 Similar to NADH-dependent hydroxypyruvate redu... 88 7e-18
Os04g0650800 Similar to Phosphoglycerate dehydrogenase 76 3e-14
>Os01g0228600 Similar to 2-hydroxyacid dehydrogenase (AGR_L_379p)
Length = 316
Score = 532 bits (1371), Expect = e-151, Method: Compositional matrix adjust.
Identities = 268/316 (84%), Positives = 268/316 (84%)
Query: 1 MDSLGVLLVAPMNAYLEQELDRRCRLFRLWESPADRRDDYLRAHASSIRAVVPYALQGVD 60
MDSLGVLLVAPMNAYLEQELDRRCRLFRLWESPADRRDDYLRAHASSIRAVVPYALQGVD
Sbjct: 1 MDSLGVLLVAPMNAYLEQELDRRCRLFRLWESPADRRDDYLRAHASSIRAVVPYALQGVD 60
Query: 61 AAMIDALPSLEIVSSFSVGIDRVDLDACLRRGVRVTNTPXXXXXXXXXXXXXXXXXXXRK 120
AAMIDALPSLEIVSSFSVGIDRVDLDACLRRGVRVTNTP RK
Sbjct: 61 AAMIDALPSLEIVSSFSVGIDRVDLDACLRRGVRVTNTPDVLTDDVADLAVGLAIAALRK 120
Query: 121 IPQADRYVRAGKWKSKGDFTLTTRFSGKXXXXXXXXXXXXXXXKRVEAFDCPVNYYQRTK 180
IPQADRYVRAGKWKSKGDFTLTTRFSGK KRVEAFDCPVNYYQRTK
Sbjct: 121 IPQADRYVRAGKWKSKGDFTLTTRFSGKRVGIIGLGRIGLAVAKRVEAFDCPVNYYQRTK 180
Query: 181 QDHPGYTYYPSVVELAASSDVLVVACPLNEHTRHIVNREVMEALGPRGVLINIGRGPHVD 240
QDHPGYTYYPSVVELAASSDVLVVACPLNEHTRHIVNREVMEALGPRGVLINIGRGPHVD
Sbjct: 181 QDHPGYTYYPSVVELAASSDVLVVACPLNEHTRHIVNREVMEALGPRGVLINIGRGPHVD 240
Query: 241 EAAMVXXXXXXXXXXXXXXVFEDEPNVPEALLGMDNVVLVPHVGSATHETRTAMADLVLG 300
EAAMV VFEDEPNVPEALLGMDNVVLVPHVGSATHETRTAMADLVLG
Sbjct: 241 EAAMVAALADGRLGGAGLDVFEDEPNVPEALLGMDNVVLVPHVGSATHETRTAMADLVLG 300
Query: 301 NLEAHVAGKPLLTQVV 316
NLEAHVAGKPLLTQVV
Sbjct: 301 NLEAHVAGKPLLTQVV 316
>Os04g0107200 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region
domain containing protein
Length = 329
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/315 (39%), Positives = 166/315 (52%), Gaps = 4/315 (1%)
Query: 6 VLLVAPMNAYLEQELDRRCRLFRLWESPADRRDDYLRAHASSIRAVVPYALQG----VDA 61
VLL+ +N L EL R R+ +ES A A A + + G V+A
Sbjct: 13 VLLLRRINDRLAAELRSRFRVLNFYESSAPLLAFLAAAAAGPDPPLAAVVVAGGAIQVNA 72
Query: 62 AMIDALPSLEIVSSFSVGIDRVDLDACLRRGVRVTNTPXXXXXXXXXXXXXXXXXXXRKI 121
A +DA+PSL V + G+D +DL C RRGV V R+I
Sbjct: 73 AFLDAVPSLGCVVTTGAGVDHIDLAECARRGVAVAGAGTVFSTDVADHAVGLLVDVLRRI 132
Query: 122 PQADRYVRAGKWKSKGDFTLTTRFSGKXXXXXXXXXXXXXXXKRVEAFDCPVNYYQRTKQ 181
+DRYVR G W ++GD+ L ++ SGK KR++AF C ++Y R +
Sbjct: 133 SASDRYVRRGLWAARGDYPLGSKLSGKHVGIIGLGSIGSLIAKRLQAFGCTISYNSRRPK 192
Query: 182 DHPGYTYYPSVVELAASSDVLVVACPLNEHTRHIVNREVMEALGPRGVLINIGRGPHVDE 241
D Y Y+P V +LAA+SDVL+VAC LN+ TRHIV+ V+EALG GV++NI RG VDE
Sbjct: 193 DSVSYNYFPDVTDLAAASDVLIVACALNDETRHIVDSSVLEALGKDGVVVNIARGGIVDE 252
Query: 242 AAMVXXXXXXXXXXXXXXVFEDEPNVPEALLGMDNVVLVPHVGSATHETRTAMADLVLGN 301
A ++ VFE EP+VP LL MDNVVL H T E+ +ADL++ N
Sbjct: 253 AELIRALKEGRIAGAGLDVFEKEPDVPAELLSMDNVVLTAHEAVFTTESNWDLADLMIAN 312
Query: 302 LEAHVAGKPLLTQVV 316
LEA +G PLLT V+
Sbjct: 313 LEAFFSGGPLLTPVL 327
>Os04g0107500 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region
domain containing protein
Length = 316
Score = 211 bits (537), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 167/310 (53%), Gaps = 8/310 (2%)
Query: 6 VLLVAPMNAYLEQELDRRCRLFRLWESPADRRDDYLRAHASSIRAVVPYALQGVDAAMID 65
V+L+ P+ LD R R + + AD +A+ RAV+ AL V A ++
Sbjct: 13 VILLRPLYPEFAAALDGRFRF--VLAADADE------GNAAEARAVLVPALTPVSADLVA 64
Query: 66 ALPSLEIVSSFSVGIDRVDLDACLRRGVRVTNTPXXXXXXXXXXXXXXXXXXXRKIPQAD 125
LP LEIV + S G+D +DLDAC RRG+ VTN R++ A+
Sbjct: 65 RLPKLEIVVATSTGVDHIDLDACRRRGISVTNAGEVFAPDVADYAVGLVVAVLRRVAAAE 124
Query: 126 RYVRAGKWKSKGDFTLTTRFSGKXXXXXXXXXXXXXXXKRVEAFDCPVNYYQRTKQDHPG 185
Y+R G+W + GD+ L T+ SGK +R+ AF C + Y R+ +
Sbjct: 125 AYLRRGRWAADGDYPLATKVSGKRVGIVGLGSIGGLVARRLAAFGCVIAYNSRSPKASAP 184
Query: 186 YTYYPSVVELAASSDVLVVACPLNEHTRHIVNREVMEALGPRGVLINIGRGPHVDEAAMV 245
Y +YPSV ELAA SDVLV++C L E TR +V REVMEALG GVL+N+GRG VDEA +V
Sbjct: 185 YKFYPSVRELAAESDVLVLSCALTEETRRMVGREVMEALGKGGVLVNVGRGGLVDEAELV 244
Query: 246 XXXXXXXXXXXXXXVFEDEPNVPEALLGMDNVVLVPHVGSATHETRTAMADLVLGNLEAH 305
V+E+EP VP L GMDNVVL H T E+ + D+V NL+A
Sbjct: 245 RCLREGVLGGAGLDVYENEPEVPPELWGMDNVVLSDHRAVITPESIQGVVDVVKANLDAF 304
Query: 306 VAGKPLLTQV 315
+GKPL++QV
Sbjct: 305 FSGKPLVSQV 314
>Os04g0107300 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region
domain containing protein
Length = 326
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/260 (40%), Positives = 144/260 (55%), Gaps = 3/260 (1%)
Query: 59 VDAAMIDALPSLEIVSSFSVGIDRVDLDACLRRGVRVTNTPXXXXXXXXXXXXXXXXXXX 118
V A ++DA+PSL + + S G + +DL C RRGV+V N
Sbjct: 63 VGAELLDAVPSLRCIITVSAGTNHIDLRECARRGVQVANAGGIYSTDVADYAVGLLLDVL 122
Query: 119 RKIPQADRYVRAGKWKSK--GDFT-LTTRFSGKXXXXXXXXXXXXXXXKRVEAFDCPVNY 175
R + DR+VR G + GDF L ++ G+ +R+EAF C V+Y
Sbjct: 123 RHVSAGDRFVRRGLCPEQRGGDFLPLGSKIGGRRVGIIGLGSIGSAIARRLEAFGCVVSY 182
Query: 176 YQRTKQDHPGYTYYPSVVELAASSDVLVVACPLNEHTRHIVNREVMEALGPRGVLINIGR 235
+ R +++ Y Y+P+ +LAASSDVLVVAC L TR IV+R V++ALG RGV++N+ R
Sbjct: 183 HNRRRREDVAYAYFPTATDLAASSDVLVVACALTAETRRIVDRGVLDALGERGVVVNVAR 242
Query: 236 GPHVDEAAMVXXXXXXXXXXXXXXVFEDEPNVPEALLGMDNVVLVPHVGSATHETRTAMA 295
G +VDEA +V VF+DEPNVP L MDNVVL PH T E+ ++
Sbjct: 243 GANVDEAELVRALAEGRVAGAGLEVFDDEPNVPPELWAMDNVVLTPHQAIFTPESMADLS 302
Query: 296 DLVLGNLEAHVAGKPLLTQV 315
+VL NL+A AG+PLLT+V
Sbjct: 303 RVVLANLDAFFAGEPLLTRV 322
>Os04g0106400 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region
domain containing protein
Length = 329
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/257 (42%), Positives = 143/257 (55%)
Query: 60 DAAMIDALPSLEIVSSFSVGIDRVDLDACLRRGVRVTNTPXXXXXXXXXXXXXXXXXXXR 119
DAA+ DA+PSL V S + G+D +DL C RRGV V N+ R
Sbjct: 71 DAALFDAVPSLRCVVSTAAGVDHIDLAECARRGVVVANSGTVYSGDVADHAVGMVIDVMR 130
Query: 120 KIPQADRYVRAGKWKSKGDFTLTTRFSGKXXXXXXXXXXXXXXXKRVEAFDCPVNYYQRT 179
++ A+RYVR G W +GD+ L ++ SGK KR+EAF C ++Y R
Sbjct: 131 RVSAAERYVRRGLWPVQGDYPLGSKVSGKRVGIIGLGNIGSLIAKRLEAFGCVISYNSRN 190
Query: 180 KQDHPGYTYYPSVVELAASSDVLVVACPLNEHTRHIVNREVMEALGPRGVLINIGRGPHV 239
+ YTYY V LAA SDVLVV+C LN TRHIV EV++ALG GV++N+GRG +V
Sbjct: 191 PKRSLPYTYYADVRALAADSDVLVVSCALNSETRHIVGGEVLDALGEGGVVVNVGRGANV 250
Query: 240 DEAAMVXXXXXXXXXXXXXXVFEDEPNVPEALLGMDNVVLVPHVGSATHETRTAMADLVL 299
DEAA+V VFE EP V L M+NVVL PHV T E+R+ + D +
Sbjct: 251 DEAALVRALREGRIAGAGLDVFEGEPKVSPELREMENVVLTPHVAVWTAESRSDLRDHTV 310
Query: 300 GNLEAHVAGKPLLTQVV 316
NL+A +G PLLT V+
Sbjct: 311 ANLDAFFSGDPLLTPVM 327
>Os02g0101500 Similar to NADH-dependent hydroxypyruvate reductase (EC 1.1.1.29)
(Fragment)
Length = 386
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 110/263 (41%), Gaps = 29/263 (11%)
Query: 74 SSFSVGIDRVDLDACLRRGVRVTNTPXXXXXXXXXXXXXXXXXXXRKIPQADRYVRAGKW 133
S+ +VG + VD++A R G+ V NTP R+I +AD+++RAG +
Sbjct: 91 SNMAVGYNNVDVEAANRNGIAVGNTPGVLTETTAELAASLSLAAARRIVEADQFMRAGLY 150
Query: 134 KSKGDFTLTTRFSGKXXXXXXXXXX------XXXXXKRVEAFDCPVNYY---QRTKQDHP 184
D L F G +E F + YY Q T+ +
Sbjct: 151 ----DGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMIEGFKMNLIYYDLYQSTRLEKF 206
Query: 185 GYTY---------YPSVVELAAS-------SDVLVVACPLNEHTRHIVNREVMEALGPRG 228
Y P + AA+ +DV+ + L++ T H++N E + +
Sbjct: 207 VTAYGQFLKANGEQPVTWKRAATMEDVLREADVISLHPVLDKTTYHLINPERLAIMKKEA 266
Query: 229 VLINIGRGPHVDEAAMVXXXXXXXXXXXXXXVFEDEPNVPEALLGMDNVVLVPHVGSATH 288
VL+N RGP +DE A+V VFEDEP + L M N V+VPH+ SA+
Sbjct: 267 VLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASK 326
Query: 289 ETRTAMADLVLGNLEAHVAGKPL 311
TR MA L N+ + G P+
Sbjct: 327 WTREGMATLAALNVLGKIKGYPV 349
>Os04g0650800 Similar to Phosphoglycerate dehydrogenase
Length = 613
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 12/247 (4%)
Query: 70 LEIVSSFSVGIDRVDLDACLRRGVRVTNTPXXXXXXXXXXXXXXXXXXXRKIPQADRYVR 129
L +V VGID VDL A G V N P R I QAD ++
Sbjct: 135 LRVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMSRNIAQADASLK 194
Query: 130 AGKWKSKGDFTLTTRFSGKXXXXXXXXXXXXXXXKRVEAFDCPV---NYYQRTKQDHPGY 186
AGKW+ + + GK +R + V + Y + H
Sbjct: 195 AGKWQR--NKYVGVSLVGKTIAILGFGKVGSEVARRAKGLGMHVIAHDPYASADRAHAIG 252
Query: 187 TYYPSVVELAASSDVLVVACPLNEHTRHIVNREVMEALGPRGV-LINIGRGPHVDEAAMV 245
S+ + ++D + + PL T ++N E + +GV +IN+ RG +DE A+V
Sbjct: 253 VELVSMEDALTTADFISLHMPLTPATNKMLNDETFAKM-KKGVRIINVARGGVIDEDALV 311
Query: 246 XXXXXXXXXXXXXXVFEDEPNVPEALLGM-DNVVLVPHVGSATHETRTA----MADLVLG 300
VF EP P++ L + +NV + PH+G++T E + +A+ V+G
Sbjct: 312 RALDSGIVAQAALDVFTKEPPAPDSKLVLHENVTVTPHLGASTVEAQEGVAIEIAEAVIG 371
Query: 301 NLEAHVA 307
L+ +A
Sbjct: 372 ALKGELA 378
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,908,926
Number of extensions: 304372
Number of successful extensions: 576
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 7
Length of query: 316
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 215
Effective length of database: 11,762,187
Effective search space: 2528870205
Effective search space used: 2528870205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)