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Os04g0106400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.02 (0.0167) R2 : 0.872
β1 : -1.65 (0.0613) R2dD : 0.212 R2D : -0.016
β2 : 1.43 (0.042) R2dC : 0.327 R2C : 0.238
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.35 (0.0357) R2dN8 : 0.535 R2N8 : 0.321
σ : 0.314
deviance : 45.1
__
_____
C
peak time of C : 15.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
38.3 0.291 9.01 -1.69 1.44 -0.415 -1.13 0.32 -1.31 15.5 1001 3438 -- --
38.33 0.288 9.01 -1.68 1.44 -0.364 -1.13 -- -1.31 15.5 1001 3345 -- --
42.29 0.303 9.01 -1.72 1.43 -0.427 -- 0.367 -1.32 15.4 1001 3359 -- --
42.34 0.303 9.01 -1.7 1.43 -0.363 -- -- -1.32 15.4 1001 3342 -- --
155.84 0.585 9.02 -1.83 -- -0.495 -- 1.18 -1.36 -- 1001 3359 -- --
41.01 0.3 9.01 -1.63 1.44 -- -1.15 -- -1.34 15.5 -- -- -- --
45.1 0.314 9.02 -1.65 1.43 -- -- -- -1.35 15.4 -- -- -- --
156.34 0.585 9.01 -1.77 -- -0.349 -- -- -1.36 -- 1001 3342 -- --
116.74 0.506 8.97 -- 1.46 -0.106 -- -- -1.15 15.4 1002 3170 -- --
160.29 0.592 9.02 -1.71 -- -- -- -- -1.39 -- -- -- -- --
117.23 0.506 8.98 -- 1.47 -- -- -- -1.16 15.4 -- -- -- --
234.61 0.713 8.96 -- -- -0.24 -- -- -1.11 -- 1002 18630 -- --
237.86 0.72 8.98 -- -- -- -- -- -1.2 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 35.17 temperature 20.0 270 > th dose independent rect. 16 6
2 35.47 temperature 20.0 270 > th dose independent rect. 17 4
3 35.49 atmosphere 995.0 30 > th dose dependent rect. 5 17
6 35.64 radiation 40.0 1440 < th dose dependent rect. 23 6
11 35.80 atmosphere 1015.0 270 < th dose dependent rect. 8 8
21 36.06 temperature 10.0 270 > th dose dependent rect. 6 10
23 36.08 temperature 15.0 1440 > th dose independent rect. 6 17
24 36.09 temperature 20.0 90 > th dose independent rect. 19 3
35 36.33 temperature 15.0 270 > th dose dependent rect. 17 4
36 36.38 wind 5.0 30 < th dose independent rect. 22 7
38 36.40 temperature 10.0 270 > th dose dependent rect. 16 6
43 36.42 temperature 30.0 30 < th dose dependent rect. 5 8
45 36.44 temperature 20.0 10 > th dose independent rect. 19 3
46 36.44 temperature 30.0 30 < th dose dependent rect. 22 7
50 36.48 temperature 30.0 270 < th dose dependent rect. 2 9
56 36.53 temperature 15.0 90 > th dose dependent rect. 19 3
57 36.54 atmosphere 1000.0 30 > th dose independent rect. 5 17
60 36.57 wind 3.0 90 > th dose independent rect. 19 3
71 36.62 atmosphere 1015.0 30 < th dose independent rect. 22 7
88 36.70 atmosphere 1010.0 270 < th dose independent rect. 16 5
91 36.71 temperature 25.0 30 < th dose independent rect. 5 9
99 36.73 temperature 10.0 30 > th dose independent rect. 22 7
100 36.73 temperature 30.0 30 < th dose independent rect. 22 7
101 36.73 humidity 50.0 30 > th dose independent rect. 22 7
104 36.73 atmosphere 995.0 30 > th dose independent rect. 22 7
105 36.73 radiation 1.0 30 < th dose independent rect. 22 7
110 36.73 temperature 10.0 30 > th dose independent rect. 5 17
112 36.73 atmosphere 1015.0 30 < th dose independent rect. 5 17
113 36.73 radiation 10.0 30 < th dose dependent rect. 22 7
117 36.73 atmosphere 1015.0 10 < th dose dependent rect. 10 9
121 36.74 atmosphere 1015.0 10 < th dose dependent rect. 8 11
122 36.75 precipitation 0.1 30 < th dose independent rect. 22 7
123 36.75 precipitation 0.1 30 < th dose dependent rect. 22 7
127 36.78 wind 1.0 270 > th dose independent rect. 21 19
133 36.80 temperature 25.0 30 < th dose independent rect. 5 7
137 36.80 atmosphere 995.0 30 > th dose dependent rect. 9 13
139 36.81 radiation 10.0 1440 < th dose independent rect. 23 6
140 36.81 wind 1.0 90 > th dose dependent rect. 19 3
143 36.82 temperature 20.0 10 > th dose independent rect. 19 13
153 36.86 wind 9.0 30 < th dose independent rect. 5 17
171 36.90 radiation 1.0 90 < th dose dependent rect. 5 17
175 36.92 radiation 1.0 90 < th dose independent rect. 5 17
181 36.93 wind 1.0 90 > th dose dependent rect. 20 1
184 36.94 temperature 20.0 10 > th dose independent rect. 19 5
196 36.96 wind 1.0 90 > th dose independent rect. 22 6
212 36.99 temperature 25.0 270 > th dose independent rect. 23 17
213 36.99 temperature 10.0 270 > th dose dependent rect. 22 18
220 37.01 precipitation 0.1 30 < th dose independent rect. 5 17
221 37.01 wind 7.0 270 < th dose independent rect. 21 19
225 37.01 precipitation 0.1 30 < th dose dependent rect. 5 17
227 37.02 temperature 15.0 1440 > th dose independent rect. 8 15
256 37.03 temperature 25.0 270 > th dose independent rect. 7 9
264 37.03 humidity 50.0 30 > th dose dependent rect. 22 7
301 37.09 wind 9.0 30 < th dose dependent rect. 22 7
303 37.10 temperature 20.0 10 > th dose independent rect. 19 7
307 37.10 temperature 15.0 270 > th dose independent rect. 17 15
321 37.12 temperature 10.0 1440 > th dose independent rect. 23 6
325 37.12 temperature 30.0 1440 < th dose independent rect. 23 6
332 37.12 humidity 50.0 1440 > th dose independent rect. 23 6
342 37.12 atmosphere 995.0 1440 > th dose independent rect. 23 6
378 37.13 temperature 20.0 30 > th dose independent rect. 19 11
392 37.14 temperature 15.0 270 > th dose independent rect. 17 13
417 37.17 temperature 30.0 30 < th dose dependent rect. 5 17
423 37.18 precipitation 0.1 270 < th dose independent rect. 21 19
431 37.18 precipitation 0.1 270 < th dose dependent rect. 21 19
445 37.20 wind 3.0 90 > th dose independent rect. 20 1
469 37.23 radiation 30.0 270 < th dose independent rect. 16 5
477 37.24 temperature 20.0 270 < th dose independent rect. 18 8
486 37.25 atmosphere 995.0 10 > th dose dependent rect. 7 15
487 37.26 wind 9.0 270 < th dose independent rect. 16 5
492 37.26 radiation 10.0 270 < th dose independent rect. 14 7
495 37.26 temperature 10.0 270 > th dose independent rect. 21 19
500 37.27 temperature 15.0 270 > th dose independent rect. 16 17
501 37.27 humidity 50.0 10 > th dose independent rect. 22 21
506 37.28 wind 1.0 270 > th dose independent rect. 16 5
510 37.28 temperature 20.0 10 < th dose independent rect. 19 9
516 37.28 atmosphere 1000.0 90 > th dose dependent rect. 11 11
524 37.30 atmosphere 1000.0 270 > th dose independent rect. 16 5
564 37.30 humidity 70.0 30 > th dose dependent rect. 5 17
584 37.32 radiation 40.0 270 < th dose dependent rect. 16 5
616 37.33 atmosphere 1015.0 270 < th dose independent rect. 21 19
672 37.37 wind 1.0 270 > th dose independent rect. 6 11
674 37.37 temperature 25.0 30 < th dose independent rect. 5 17
675 37.37 humidity 50.0 270 > th dose independent rect. 21 19
683 37.38 atmosphere 1000.0 90 > th dose independent rect. 19 3
691 37.38 wind 7.0 10 < th dose independent rect. 22 21
695 37.39 temperature 10.0 90 > th dose independent rect. 19 3
697 37.39 temperature 30.0 90 < th dose independent rect. 19 3
698 37.39 humidity 50.0 90 > th dose independent rect. 19 3
701 37.39 atmosphere 1010.0 90 < th dose independent rect. 19 3
703 37.39 radiation 1.0 90 < th dose independent rect. 19 3
717 37.39 temperature 10.0 90 > th dose independent rect. 22 21
718 37.39 precipitation 0.1 90 < th dose independent rect. 22 21
721 37.39 radiation 1.0 90 < th dose dependent rect. 19 3
732 37.39 precipitation 0.1 90 < th dose dependent rect. 22 21
743 37.40 radiation 10.0 270 < th dose dependent rect. 8 12
761 37.41 atmosphere 1015.0 90 < th dose independent rect. 22 21
781 37.43 wind 9.0 90 < th dose independent rect. 19 3
815 37.43 wind 1.0 10 > th dose independent rect. 5 17
833 37.43 atmosphere 1015.0 90 < th dose dependent rect. 22 20
838 37.44 atmosphere 995.0 90 > th dose dependent rect. 19 3
851 37.45 radiation 1.0 270 > th dose independent rect. 6 11
868 37.45 atmosphere 1015.0 10 < th dose dependent rect. 22 21
871 37.46 atmosphere 995.0 270 > th dose independent rect. 21 19
872 37.46 precipitation 0.1 90 < th dose independent rect. 21 23
881 37.46 precipitation 0.1 90 < th dose dependent rect. 21 23
905 37.48 atmosphere 995.0 720 > th dose dependent rect. 9 3
923 37.49 temperature 10.0 10 > th dose dependent rect. 8 11
926 37.49 temperature 10.0 270 > th dose dependent rect. 17 13
945 37.51 precipitation 0.1 270 < th dose independent rect. 16 5
953 37.51 radiation 1.0 270 > th dose independent rect. 8 9
958 37.51 radiation 1.0 270 < th dose dependent sin 0 NA
959 37.51 precipitation 0.1 270 < th dose dependent rect. 16 5