Os04g0107300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region domain containing protein.
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Os04g0107300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.42 | 0.565 | 6.43 | 0.593 | 1.47 | -1.98 | 1.73 | 0.152 | 0.449 | 3.69 | 25.44 | 202 | -- | -- |
| 144.45 | 0.56 | 6.43 | 0.618 | 1.48 | -2 | 1.78 | -- | 0.452 | 3.67 | 25.44 | 197 | -- | -- |
| 150.85 | 0.572 | 6.46 | 0.43 | 1.49 | -1.89 | -- | 1.31 | 0.408 | 3.48 | 25.51 | 131 | -- | -- |
| 153.74 | 0.577 | 6.43 | 0.606 | 1.5 | -2.01 | -- | -- | 0.446 | 3.52 | 25.4 | 141 | -- | -- |
| 227.13 | 0.702 | 6.44 | 0.672 | -- | -1.65 | -- | 0.286 | 0.509 | -- | 27.62 | 1118 | -- | -- |
| 202.28 | 0.667 | 6.33 | 1.13 | 1.12 | -- | 1.8 | -- | 0.87 | 3.78 | -- | -- | -- | -- |
| 211.87 | 0.682 | 6.34 | 1.1 | 1.13 | -- | -- | -- | 0.86 | 3.78 | -- | -- | -- | -- |
| 224.6 | 0.698 | 6.44 | 0.562 | -- | -1.95 | -- | -- | 0.447 | -- | 27 | 1113 | -- | -- |
| 162.38 | 0.594 | 6.45 | -- | 1.55 | -2.2 | -- | -- | 0.36 | 3.57 | 25.36 | 163 | -- | -- |
| 282.5 | 0.785 | 6.34 | 1.15 | -- | -- | -- | -- | 0.89 | -- | -- | -- | -- | -- |
| 243.7 | 0.73 | 6.37 | -- | 1.15 | -- | -- | -- | 0.737 | 3.77 | -- | -- | -- | -- |
| 231.78 | 0.709 | 6.47 | -- | -- | -2.21 | -- | -- | 0.337 | -- | 27.06 | 1128 | -- | -- |
| 317.15 | 0.831 | 6.37 | -- | -- | -- | -- | -- | 0.763 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 136.00 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 17 |
| 3 | 136.90 | temperature | 30 | 30 | < th | dose dependent | sin | 7 | NA |
| 8 | 139.07 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 19 |
| 14 | 139.75 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 22 | 140.26 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 57 | 142.84 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 16 |
| 64 | 143.18 | temperature | 10 | 30 | > th | dose dependent | sin | 8 | NA |
| 130 | 145.27 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 133 | 145.48 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 141 | 145.69 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 155 | 146.12 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 166 | 146.32 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 172 | 146.46 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 223 | 147.43 | temperature | 25 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 233 | 147.65 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 271 | 148.27 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 278 | 148.33 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 12 |
| 498 | 152.60 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 19 |
| 625 | 154.81 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 643 | 155.12 | temperature | 25 | 720 | < th | dose dependent | sin | 14 | NA |
| 675 | 155.46 | temperature | 15 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 739 | 156.10 | temperature | 20 | 270 | < th | dose dependent | sin | 23 | NA |
| 812 | 156.79 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 10 |
| 841 | 157.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 10 |
| 925 | 157.80 | temperature | 15 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 984 | 158.35 | temperature | 20 | 270 | < th | dose dependent | rect. | 5 | 16 |