BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0107300 Os04g0107300|AK070553
(326 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G45630.2 | chr2:18796000-18797089 FORWARD LENGTH=339 229 1e-60
AT1G12550.1 | chr1:4274649-4275831 FORWARD LENGTH=324 218 5e-57
AT1G79870.1 | chr1:30044794-30045851 FORWARD LENGTH=314 191 4e-49
AT5G28310.1 | chr5:10300117-10301844 REVERSE LENGTH=234 65 6e-11
AT5G14780.1 | chr5:4777043-4779190 FORWARD LENGTH=385 58 7e-09
>AT2G45630.2 | chr2:18796000-18797089 FORWARD LENGTH=339
Length = 338
Score = 229 bits (585), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/262 (45%), Positives = 166/262 (63%), Gaps = 4/262 (1%)
Query: 62 PVGAELLDAVPSLRCIITVSAGTNHIDLRECARRGVQVANAGGIYSTDVADYAVGLLLDV 121
PV A+L+ +P+LR ++T SAG +H+DL EC RRG+ VANAG +S DVAD AVGLL+DV
Sbjct: 79 PVTADLIRILPNLRLVVTTSAGVDHVDLVECRRRGISVANAGSSFSEDVADTAVGLLIDV 138
Query: 122 LRHVSAGDRFVRRGLCPEQRGGDFLPLXXXXXXXXXXXXXXXXXXXXXXXRLEAFGCVVS 181
R +SA +RFV++ P + GD+ PL RL+AFGC +S
Sbjct: 139 FRRISAANRFVKQRFWPLK--GDY-PLGSKLGRKRIGIVGLGSIGSKVATRLDAFGCQIS 195
Query: 182 YHNRRRRE-DVAYAYFPTATDLAASSDVLVVACALTAETRRIVDRGVLDALGEXXXXXXX 240
Y +R R+ DV Y Y+ ++AA+SD L++ C L +T R++++ VL ALG+
Sbjct: 196 YSSRNRKPYDVPYHYYMDIEEMAANSDALIICCELNEKTLRLINKDVLSALGKRGVIVNV 255
Query: 241 XXXXXXDEAELVRALAEGRVAGAGLEVFDDEPNVPPELWAMDNVVLTPHQAIFTPESMAD 300
DE E+VR L EG + GAGL+VF+DEPNVP EL+ +DNVV +PH A T E + +
Sbjct: 256 ARGAIIDEEEMVRCLREGEIGGAGLDVFEDEPNVPKELFELDNVVFSPHSAFMTLEGLEE 315
Query: 301 LSRVVLANLDAFFAGEPLLTRV 322
L +VV+ N++AFF+ +PLLT V
Sbjct: 316 LGKVVVGNIEAFFSNKPLLTPV 337
>AT1G12550.1 | chr1:4274649-4275831 FORWARD LENGTH=324
Length = 323
Score = 218 bits (554), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 129/324 (39%), Positives = 181/324 (55%), Gaps = 9/324 (2%)
Query: 2 SSPPVLLLCRLFPGTFTD--VAHRFRLLDFYASXXXXXXXXXXXXXXXDPPRVVLVFGGG 59
S PPV+LL R TF D + FR L S V+ G
Sbjct: 5 SEPPVVLLHRPPSLTFMDEILTREFRTLITDTSSSESLPSFFPRHASSARAFVI----SG 60
Query: 60 PIPVGAELLDAVPSLRCIITVSAGTNHIDLRECARRGVQVANAGGIYSTDVADYAVGLLL 119
+PV ELL +PSL+ ++ S G +HIDL C RRG+ + NAG +S DVAD AVGLL+
Sbjct: 61 RLPVTDELLSHLPSLQILVCTSVGIDHIDLAACKRRGIVITNAGNAFSDDVADCAVGLLI 120
Query: 120 DVLRHVSAGDRFVRRGLCPEQRGGDFLPLXXXXXXXXXXXXXXXXXXXXXXXRLEAFGCV 179
VLR + A DR+VR G + GDF L RLE+FGCV
Sbjct: 121 SVLRRIPAADRYVRSG--NWAKFGDF-QLGSKVSGKRVGIVGLGSIGSFVAKRLESFGCV 177
Query: 180 VSYHNRRRREDVAYAYFPTATDLAASSDVLVVACALTAETRRIVDRGVLDALGEXXXXXX 239
+SY++R +++ Y Y+ LA ++DVLV+ C+LT ET IV+R V++ LG+
Sbjct: 178 ISYNSRSQKQSSPYRYYSDILSLAENNDVLVLCCSLTDETHHIVNREVMELLGKDGVVIN 237
Query: 240 XXXXXXXDEAELVRALAEGRVAGAGLEVFDDEPNVPPELWAMDNVVLTPHQAIFTPESMA 299
DE E+V+ L +G + GAGL+VF++EP VP EL+ +DNVVL+PH A+ TP S+
Sbjct: 238 VGRGKLIDEKEMVKCLVDGVIGGAGLDVFENEPAVPQELFGLDNVVLSPHFAVATPGSLD 297
Query: 300 DLSRVVLANLDAFFAGEPLLTRVE 323
+++++ LANL AFF+ PLL+ V+
Sbjct: 298 NVAQIALANLKAFFSNRPLLSPVQ 321
>AT1G79870.1 | chr1:30044794-30045851 FORWARD LENGTH=314
Length = 313
Score = 191 bits (485), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 174/322 (54%), Gaps = 10/322 (3%)
Query: 1 MSSPPVLLLCRLFPGTFTDVAHRFRLLDFYASXXXXXXXXXXXXXXXDPPRVVLVFGGGP 60
M S VL++C + ++ RF LL F+ S + V G
Sbjct: 1 MESIGVLMMCPMSSYLENELEKRFNLLRFWTSPEKSVLLETHRNS------IRAVVGNAS 54
Query: 61 IPVGAELLDAVPSLRCIITVSAGTNHIDLRECARRGVQVANAGGIYSTDVADYAVGLLLD 120
A+L+ +P+L + + S G + IDL +C +G++V N + + DVAD A+GL+L
Sbjct: 55 AGADAQLISDLPNLEIVSSFSVGLDKIDLGKCKEKGIRVTNTPDVLTEDVADLAIGLILA 114
Query: 121 VLRHVSAGDRFVRRGLCPEQRGGDFLPLXXXXXXXXXXXXXXXXXXXXXXXRLEAFGCVV 180
+LR + DR+VR G + + G+F L R EAF C +
Sbjct: 115 LLRRLCECDRYVRSG---KWKQGEF-QLTTKFSGKSVGIIGLGRIGTAIAKRAEAFSCPI 170
Query: 181 SYHNRRRREDVAYAYFPTATDLAASSDVLVVACALTAETRRIVDRGVLDALGEXXXXXXX 240
+Y++R + DVAY Y+PT DLA +SD+LVVAC LT +TR IVDR V+DALG
Sbjct: 171 NYYSRTIKPDVAYKYYPTVVDLAQNSDILVVACPLTEQTRHIVDRQVMDALGAKGVLINI 230
Query: 241 XXXXXXDEAELVRALAEGRVAGAGLEVFDDEPNVPPELWAMDNVVLTPHQAIFTPESMAD 300
DE EL++AL EGR+ GA L+VF+ EP+VP EL+ ++NVVL PH T E+
Sbjct: 231 GRGPHVDEQELIKALTEGRLGGAALDVFEQEPHVPEELFGLENVVLLPHVGSGTVETRNA 290
Query: 301 LSRVVLANLDAFFAGEPLLTRV 322
++ +V+ NL+A F+G+ LLT V
Sbjct: 291 MADLVVGNLEAHFSGKSLLTPV 312
>AT5G28310.1 | chr5:10300117-10301844 REVERSE LENGTH=234
Length = 233
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 67/152 (44%), Gaps = 52/152 (34%)
Query: 172 RLEAFGCVVSYHNRRRR-EDVAYAYFPTATDLAASSDVLVVACALTAETRRIVDRGVLDA 230
RL+AFGC +SY +R R+ V Y Y+ ++ ++V AL A
Sbjct: 132 RLKAFGCQISYSSRNRKPYAVPYHYYMDIEEMHG----VIVNVALGA------------- 174
Query: 231 LGEXXXXXXXXXXXXXDEAELVRALAEGRVAGAGLEVFDDEPNVPPELWAMDNVVLTPHQ 290
DE E+ NVP EL+ +DNVV +PH
Sbjct: 175 --------------IIDEEEM--------------------SNVPKELFELDNVVFSPHC 200
Query: 291 AIFTPESMADLSRVVLANLDAFFAGEPLLTRV 322
A T E + +L +VV+ N++AFF+ +PLLT V
Sbjct: 201 AFMTLEGLEELGKVVVGNIEAFFSNKPLLTPV 232
>AT5G14780.1 | chr5:4777043-4779190 FORWARD LENGTH=385
Length = 384
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 107/267 (40%), Gaps = 9/267 (3%)
Query: 60 PIPVGAELLDAVPSLRCIITVSAGTNHIDLRECARRGVQVANAGGIYSTDVADYAVGLLL 119
P V AE + +L+ ++T G++HIDL+ A G+ VA G VA+ + +L
Sbjct: 106 PAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRIL 165
Query: 120 DVLRHVSAGDRFVRRGLCPEQRGGDFLPLXXXXXXXXXXXXXXXXXXXXXXXRLEAFGCV 179
++R+ G V +G E RL+ FGC
Sbjct: 166 ILMRNFVPGYNQVVKG---EWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCN 222
Query: 180 VSYHNRRR-----REDVAYAYFPTATDLAASSDVLVVACALTAETRRIVDRGVLDALGEX 234
+ YH+R + ++ + ++ DV+V+ LT +TR + ++ ++ L +
Sbjct: 223 LLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKG 282
Query: 235 XXXXXXXXXXXXDEAELVRALAEGRVAGAGLEVFDDEPNVPPELW-AMDNVVLTPHQAIF 293
+ +V A+ G + G +V+D +P W M N +TPH +
Sbjct: 283 VLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGT 342
Query: 294 TPESMADLSRVVLANLDAFFAGEPLLT 320
T ++ + L+ +F GE T
Sbjct: 343 TIDAQLRYAAGTKDMLERYFKGEDFPT 369
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.140 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,927,140
Number of extensions: 201259
Number of successful extensions: 321
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 5
Length of query: 326
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 227
Effective length of database: 8,392,385
Effective search space: 1905071395
Effective search space used: 1905071395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)