BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0107300 Os04g0107300|AK070553
(326 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0107300 D-isomer specific 2-hydroxyacid dehydrogenase,... 527 e-150
Os04g0107200 D-isomer specific 2-hydroxyacid dehydrogenase,... 299 2e-81
Os04g0106400 D-isomer specific 2-hydroxyacid dehydrogenase,... 272 3e-73
Os04g0107500 D-isomer specific 2-hydroxyacid dehydrogenase,... 235 4e-62
Os01g0228600 Similar to 2-hydroxyacid dehydrogenase (AGR_L_... 199 3e-51
Os07g0597625 D-isomer specific 2-hydroxyacid dehydrogenase,... 111 7e-25
>Os04g0107300 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region
domain containing protein
Length = 326
Score = 527 bits (1357), Expect = e-150, Method: Compositional matrix adjust.
Identities = 275/326 (84%), Positives = 275/326 (84%)
Query: 1 MSSPPVLLLCRLFPGTFTDVAHRFRLLDFYASXXXXXXXXXXXXXXXDPPRVVLVFGGGP 60
MSSPPVLLLCRLFPGTFTDVAHRFRLLDFYAS DPPRVVLVFGGGP
Sbjct: 1 MSSPPVLLLCRLFPGTFTDVAHRFRLLDFYASALPIHAFLAAVAAHADPPRVVLVFGGGP 60
Query: 61 IPVGAELLDAVPSLRCIITVSAGTNHIDLRECARRGVQVANAGGIYSTDVADYAVGLLLD 120
IPVGAELLDAVPSLRCIITVSAGTNHIDLRECARRGVQVANAGGIYSTDVADYAVGLLLD
Sbjct: 61 IPVGAELLDAVPSLRCIITVSAGTNHIDLRECARRGVQVANAGGIYSTDVADYAVGLLLD 120
Query: 121 VLRHVSAGDRFVRRGLCPEQRGGDFLPLXXXXXXXXXXXXXXXXXXXXXXXRLEAFGCVV 180
VLRHVSAGDRFVRRGLCPEQRGGDFLPL RLEAFGCVV
Sbjct: 121 VLRHVSAGDRFVRRGLCPEQRGGDFLPLGSKIGGRRVGIIGLGSIGSAIARRLEAFGCVV 180
Query: 181 SYHNRRRREDVAYAYFPTATDLAASSDVLVVACALTAETRRIVDRGVLDALGEXXXXXXX 240
SYHNRRRREDVAYAYFPTATDLAASSDVLVVACALTAETRRIVDRGVLDALGE
Sbjct: 181 SYHNRRRREDVAYAYFPTATDLAASSDVLVVACALTAETRRIVDRGVLDALGERGVVVNV 240
Query: 241 XXXXXXDEAELVRALAEGRVAGAGLEVFDDEPNVPPELWAMDNVVLTPHQAIFTPESMAD 300
DEAELVRALAEGRVAGAGLEVFDDEPNVPPELWAMDNVVLTPHQAIFTPESMAD
Sbjct: 241 ARGANVDEAELVRALAEGRVAGAGLEVFDDEPNVPPELWAMDNVVLTPHQAIFTPESMAD 300
Query: 301 LSRVVLANLDAFFAGEPLLTRVEASE 326
LSRVVLANLDAFFAGEPLLTRVEASE
Sbjct: 301 LSRVVLANLDAFFAGEPLLTRVEASE 326
>Os04g0107200 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region
domain containing protein
Length = 329
Score = 299 bits (765), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 167/318 (52%), Positives = 209/318 (65%), Gaps = 3/318 (0%)
Query: 5 PVLLLCRLFPGTFTDVAHRFRLLDFYASXXXXXXXXXXXXXXXDPPRVVLVFGGGPIPVG 64
PVLLL R+ ++ RFR+L+FY S DPP +V GG I V
Sbjct: 12 PVLLLRRINDRLAAELRSRFRVLNFYESSAPLLAFLAAAAAGPDPPLAAVVVAGGAIQVN 71
Query: 65 AELLDAVPSLRCIITVSAGTNHIDLRECARRGVQVANAGGIYSTDVADYAVGLLLDVLRH 124
A LDAVPSL C++T AG +HIDL ECARRGV VA AG ++STDVAD+AVGLL+DVLR
Sbjct: 72 AAFLDAVPSLGCVVTTGAGVDHIDLAECARRGVAVAGAGTVFSTDVADHAVGLLVDVLRR 131
Query: 125 VSAGDRFVRRGLCPEQRGGDFLPLXXXXXXXXXXXXXXXXXXXXXXXRLEAFGCVVSYHN 184
+SA DR+VRRGL + GD+ PL RL+AFGC +SY++
Sbjct: 132 ISASDRYVRRGLWAAR--GDY-PLGSKLSGKHVGIIGLGSIGSLIAKRLQAFGCTISYNS 188
Query: 185 RRRREDVAYAYFPTATDLAASSDVLVVACALTAETRRIVDRGVLDALGEXXXXXXXXXXX 244
RR ++ V+Y YFP TDLAA+SDVL+VACAL ETR IVD VL+ALG+
Sbjct: 189 RRPKDSVSYNYFPDVTDLAAASDVLIVACALNDETRHIVDSSVLEALGKDGVVVNIARGG 248
Query: 245 XXDEAELVRALAEGRVAGAGLEVFDDEPNVPPELWAMDNVVLTPHQAIFTPESMADLSRV 304
DEAEL+RAL EGR+AGAGL+VF+ EP+VP EL +MDNVVLT H+A+FT ES DL+ +
Sbjct: 249 IVDEAELIRALKEGRIAGAGLDVFEKEPDVPAELLSMDNVVLTAHEAVFTTESNWDLADL 308
Query: 305 VLANLDAFFAGEPLLTRV 322
++ANL+AFF+G PLLT V
Sbjct: 309 MIANLEAFFSGGPLLTPV 326
>Os04g0106400 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region
domain containing protein
Length = 329
Score = 272 bits (695), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 162/321 (50%), Positives = 201/321 (62%), Gaps = 4/321 (1%)
Query: 3 SPPVLLLCRLFPGTF-TDVAHRFRLLDFYASXXXXXXXXXXXXXXXDPPRVVLVFGGGPI 61
PP +LL R F + R+R+LD +S DPPR +V GGG I
Sbjct: 9 KPPAVLLLRPVDQPFAVALRERYRVLDLLSSGQPLPAFLAAAAAAPDPPRAAVVMGGGSI 68
Query: 62 PVGAELLDAVPSLRCIITVSAGTNHIDLRECARRGVQVANAGGIYSTDVADYAVGLLLDV 121
A L DAVPSLRC+++ +AG +HIDL ECARRGV VAN+G +YS DVAD+AVG+++DV
Sbjct: 69 RADAALFDAVPSLRCVVSTAAGVDHIDLAECARRGVVVANSGTVYSGDVADHAVGMVIDV 128
Query: 122 LRHVSAGDRFVRRGLCPEQRGGDFLPLXXXXXXXXXXXXXXXXXXXXXXXRLEAFGCVVS 181
+R VSA +R+VRRGL P Q GD+ PL RLEAFGCV+S
Sbjct: 129 MRRVSAAERYVRRGLWPVQ--GDY-PLGSKVSGKRVGIIGLGNIGSLIAKRLEAFGCVIS 185
Query: 182 YHNRRRREDVAYAYFPTATDLAASSDVLVVACALTAETRRIVDRGVLDALGEXXXXXXXX 241
Y++R + + Y Y+ LAA SDVLVV+CAL +ETR IV VLDALGE
Sbjct: 186 YNSRNPKRSLPYTYYADVRALAADSDVLVVSCALNSETRHIVGGEVLDALGEGGVVVNVG 245
Query: 242 XXXXXDEAELVRALAEGRVAGAGLEVFDDEPNVPPELWAMDNVVLTPHQAIFTPESMADL 301
DEA LVRAL EGR+AGAGL+VF+ EP V PEL M+NVVLTPH A++T ES +DL
Sbjct: 246 RGANVDEAALVRALREGRIAGAGLDVFEGEPKVSPELREMENVVLTPHVAVWTAESRSDL 305
Query: 302 SRVVLANLDAFFAGEPLLTRV 322
+ANLDAFF+G+PLLT V
Sbjct: 306 RDHTVANLDAFFSGDPLLTPV 326
>Os04g0107500 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region
domain containing protein
Length = 316
Score = 235 bits (599), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 122/262 (46%), Positives = 170/262 (64%), Gaps = 3/262 (1%)
Query: 62 PVGAELLDAVPSLRCIITVSAGTNHIDLRECARRGVQVANAGGIYSTDVADYAVGLLLDV 121
PV A+L+ +P L ++ S G +HIDL C RRG+ V NAG +++ DVADYAVGL++ V
Sbjct: 57 PVSADLVARLPKLEIVVATSTGVDHIDLDACRRRGISVTNAGEVFAPDVADYAVGLVVAV 116
Query: 122 LRHVSAGDRFVRRGLCPEQRGGDFLPLXXXXXXXXXXXXXXXXXXXXXXXRLEAFGCVVS 181
LR V+A + ++RRG GD+ PL RL AFGCV++
Sbjct: 117 LRRVAAAEAYLRRGRWAAD--GDY-PLATKVSGKRVGIVGLGSIGGLVARRLAAFGCVIA 173
Query: 182 YHNRRRREDVAYAYFPTATDLAASSDVLVVACALTAETRRIVDRGVLDALGEXXXXXXXX 241
Y++R + Y ++P+ +LAA SDVLV++CALT ETRR+V R V++ALG+
Sbjct: 174 YNSRSPKASAPYKFYPSVRELAAESDVLVLSCALTEETRRMVGREVMEALGKGGVLVNVG 233
Query: 242 XXXXXDEAELVRALAEGRVAGAGLEVFDDEPNVPPELWAMDNVVLTPHQAIFTPESMADL 301
DEAELVR L EG + GAGL+V+++EP VPPELW MDNVVL+ H+A+ TPES+ +
Sbjct: 234 RGGLVDEAELVRCLREGVLGGAGLDVYENEPEVPPELWGMDNVVLSDHRAVITPESIQGV 293
Query: 302 SRVVLANLDAFFAGEPLLTRVE 323
VV ANLDAFF+G+PL+++V+
Sbjct: 294 VDVVKANLDAFFSGKPLVSQVQ 315
>Os01g0228600 Similar to 2-hydroxyacid dehydrogenase (AGR_L_379p)
Length = 316
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/260 (43%), Positives = 152/260 (58%), Gaps = 3/260 (1%)
Query: 63 VGAELLDAVPSLRCIITVSAGTNHIDLRECARRGVQVANAGGIYSTDVADYAVGLLLDVL 122
V A ++DA+PSL + + S G + +DL C RRGV+V N + + DVAD AVGL + L
Sbjct: 59 VDAAMIDALPSLEIVSSFSVGIDRVDLDACLRRGVRVTNTPDVLTDDVADLAVGLAIAAL 118
Query: 123 RHVSAGDRFVRRGLCPEQRGGDFLPLXXXXXXXXXXXXXXXXXXXXXXXRLEAFGCVVSY 182
R + DR+VR G + GDF L R+EAF C V+Y
Sbjct: 119 RKIPQADRYVRAGKWKSK--GDF-TLTTRFSGKRVGIIGLGRIGLAVAKRVEAFDCPVNY 175
Query: 183 HNRRRREDVAYAYFPTATDLAASSDVLVVACALTAETRRIVDRGVLDALGEXXXXXXXXX 242
+ R +++ Y Y+P+ +LAASSDVLVVAC L TR IV+R V++ALG
Sbjct: 176 YQRTKQDHPGYTYYPSVVELAASSDVLVVACPLNEHTRHIVNREVMEALGPRGVLINIGR 235
Query: 243 XXXXDEAELVRALAEGRVAGAGLEVFDDEPNVPPELWAMDNVVLTPHQAIFTPESMADLS 302
DEA +V ALA+GR+ GAGL+VF+DEPNVP L MDNVVL PH T E+ ++
Sbjct: 236 GPHVDEAAMVAALADGRLGGAGLDVFEDEPNVPEALLGMDNVVLVPHVGSATHETRTAMA 295
Query: 303 RVVLANLDAFFAGEPLLTRV 322
+VL NL+A AG+PLLT+V
Sbjct: 296 DLVLGNLEAHVAGKPLLTQV 315
>Os07g0597625 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region
domain containing protein
Length = 101
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/64 (85%), Positives = 57/64 (89%)
Query: 48 DPPRVVLVFGGGPIPVGAELLDAVPSLRCIITVSAGTNHIDLRECARRGVQVANAGGIYS 107
DPPRVVLVFGGGPI VGAELLDAVPSLRCIIT+SAG NHIDLREC RGVQV NAGG+YS
Sbjct: 14 DPPRVVLVFGGGPIRVGAELLDAVPSLRCIITISAGINHIDLRECVCRGVQVVNAGGVYS 73
Query: 108 TDVA 111
T V
Sbjct: 74 TAVG 77
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.140 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,176,411
Number of extensions: 376731
Number of successful extensions: 668
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 666
Number of HSP's successfully gapped: 6
Length of query: 326
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 225
Effective length of database: 11,762,187
Effective search space: 2646492075
Effective search space used: 2646492075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)