Os04g0107200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region domain containing protein.
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Os04g0107200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 243.12 | 0.733 | 4.88 | -5.07 | 0.427 | -1.66 | 0.769 | -12.8 | 4.24 | 21.9 | 1.29 | 6002 | 18 | 10.9 |
| 318.68 | 0.831 | 4.88 | -4.08 | 0.436 | -1.59 | 0.401 | -- | 4.26 | 21.6 | 1.06 | 39611 | 17.8 | 11 |
| 244.86 | 0.729 | 4.86 | -5.06 | 0.424 | -1.61 | -- | -12.7 | 4.26 | 22 | 1.29 | 6032 | 18 | 11 |
| 286.61 | 0.788 | 5.08 | -3.85 | 0.097 | -1.39 | -- | -- | 4.27 | 20.3 | 0.6427 | 35186 | 18 | 10.4 |
| 255.46 | 0.744 | 4.86 | -5.03 | -- | -1.61 | -- | -12.5 | 4.25 | -- | 1.29 | 6011 | 18 | 11 |
| 366.13 | 0.897 | 5.23 | -3.62 | 0.416 | -- | 0.68 | -- | 4.07 | 20.9 | -- | -- | -- | -- |
| 367.65 | 0.898 | 5.23 | -3.65 | 0.412 | -- | -- | -- | 4.07 | 21.2 | -- | -- | -- | -- |
| 276.75 | 0.775 | 5.12 | -3.38 | -- | -1.37 | -- | -- | 4.45 | -- | 0.66 | 36080 | 18 | 10.4 |
| 274.06 | 0.771 | 4.88 | -- | 0.312 | -3.34 | -- | -- | 5.62 | 20 | 0.5466 | 47497 | 20.3 | 11.2 |
| 377.5 | 0.908 | 5.22 | -3.65 | -- | -- | -- | -- | 4.06 | -- | -- | -- | -- | -- |
| 718.33 | 1.25 | 5.14 | -- | 0.419 | -- | -- | -- | 4.47 | 20.6 | -- | -- | -- | -- |
| 276.1 | 0.774 | 4.88 | -- | -- | -3.33 | -- | -- | 5.56 | -- | 0.6833 | 47520 | 22 | 11.5 |
| 728.17 | 1.26 | 5.13 | -- | -- | -- | -- | -- | 4.47 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 237.82 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 2 | 238.39 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 5 | 239.69 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 6 | 239.81 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 19 | 241.35 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 4 | 13 |
| 22 | 241.88 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 24 | 242.25 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 30 | 242.62 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 60 | 243.78 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 64 | 243.97 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 74 | 244.34 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 3 | 14 |
| 82 | 244.56 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 24 | 21 |
| 89 | 244.66 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 4 | 13 |
| 92 | 244.67 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 14 | 18 |
| 96 | 244.70 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 100 | 244.71 | temperature | 20.0 | 43200 | < th | dose dependent | sin | 2 | NA |
| 109 | 244.75 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 24 | 18 |
| 116 | 244.78 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 4 | 23 |
| 124 | 244.81 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 129 | 244.83 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 2 | 15 |
| 138 | 244.86 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 7 | 23 |
| 140 | 244.87 | temperature | 20.0 | 43200 | < th | dose dependent | no | NA | NA |
| 146 | 244.88 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 151 | 244.89 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 20 | 23 |
| 291 | 245.20 | temperature | 20.0 | 43200 | < th | dose dependent | sin | 15 | NA |
| 319 | 245.30 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 332 | 245.34 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 436 | 245.74 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 437 | 245.74 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 491 | 246.03 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 545 | 246.39 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 551 | 246.45 | humidity | 80.0 | 43200 | > th | dose independent | sin | 1 | NA |
| 571 | 246.63 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 626 | 247.13 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 8 | 21 |
| 657 | 247.52 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 693 | 247.81 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 706 | 247.88 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 726 | 248.08 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 740 | 248.17 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 742 | 248.18 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 748 | 248.20 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 18 | 8 |
| 751 | 248.23 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 762 | 248.30 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 4 | NA |
| 768 | 248.35 | humidity | 80.0 | 43200 | > th | dose dependent | no | NA | NA |
| 782 | 248.42 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 800 | 248.56 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 801 | 248.57 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 807 | 248.62 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 2 | NA |
| 821 | 248.72 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 822 | 248.72 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 835 | 248.78 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 841 | 248.82 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 16 | 23 |
| 847 | 248.86 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 871 | 248.99 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 877 | 249.03 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 6 |
| 880 | 249.04 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 886 | 249.09 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 9 |
| 887 | 249.11 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 905 | 249.18 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 914 | 249.24 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 959 | 249.35 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 17 |
| 966 | 249.37 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 979 | 249.41 | temperature | 15.0 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 984 | 249.43 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 7 | 1 |