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Os02g0101500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NADH-dependent hydroxypyruvate reductase (EC 1.1.1.29) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.8 (0.0202) R2 : 0.758
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.81 (0.0479) R2dC : 0.76 R2C : 0.758
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0331 (0.0424) R2dN8 : 0.000417 R2N8 : -0.00177
σ : 0.38
deviance : 65.98
__
_____
C
peak time of C : 0.118
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
52.64 0.341 13.8 -0.166 1.8 0.476 -1.24 0.525 -0.0751 23.7 29.73 398 -- --
52.68 0.338 13.8 -0.119 1.8 0.526 -1.21 -- -0.0666 23.7 29.76 397 -- --
58.79 0.357 13.8 -0.229 1.84 0.384 -- 1.63 -0.0808 23.7 29.67 567 -- --
59.08 0.358 13.8 -0.0635 1.84 0.567 -- -- -0.0649 23.7 29.71 567 -- --
213.97 0.685 13.7 0.206 -- 0.79 -- -0.362 0.215 -- 26.42 33 -- --
59.18 0.361 13.8 -0.194 1.81 -- -1.2 -- -0.0543 0.0639 -- -- -- --
65.41 0.379 13.8 -0.147 1.81 -- -- -- -0.0494 0.123 -- -- -- --
211.55 0.677 13.7 0.13 -- 0.841 -- -- 0.287 -- 26.36 11 -- --
59.18 0.358 13.8 -- 1.84 0.581 -- -- -0.0608 23.7 29.7 567 -- --
272.36 0.771 13.7 -0.089 -- -- -- -- -0.0229 -- -- -- -- --
65.98 0.38 13.8 -- 1.81 -- -- -- -0.0331 0.118 -- -- -- --
210.7 0.676 13.7 -- -- 0.795 -- -- 0.171 -- 26.4 11 -- --
272.57 0.771 13.7 -- -- -- -- -- -0.013 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 49.27 temperature 15.0 90 > th dose dependent rect. 12 11
3 49.40 radiation 1.0 270 > th dose independent rect. 10 21
8 49.87 temperature 30.0 270 < th dose independent rect. 15 10
14 49.97 radiation 1.0 90 > th dose independent rect. 12 19
17 50.11 humidity 70.0 270 > th dose dependent rect. 20 10
27 50.32 temperature 30.0 270 < th dose independent rect. 7 13
30 50.34 temperature 15.0 90 > th dose dependent rect. 12 19
34 50.39 temperature 15.0 10 > th dose dependent rect. 12 20
64 50.69 temperature 30.0 270 < th dose independent rect. 5 22
74 50.76 temperature 30.0 720 < th dose independent rect. 23 12
77 50.79 radiation 30.0 720 < th dose independent rect. 23 10
83 50.87 temperature 30.0 720 < th dose independent rect. 7 4
86 50.89 radiation 1.0 270 < th dose independent rect. 5 22
94 50.92 temperature 25.0 30 > th dose independent rect. 12 11
99 50.94 temperature 30.0 270 < th dose independent rect. 15 20
118 51.05 radiation 1.0 270 > th dose independent rect. 11 8
136 51.07 temperature 30.0 270 < th dose independent rect. 7 18
146 51.10 humidity 50.0 270 > th dose independent rect. 15 10
168 51.17 wind 1.0 270 > th dose independent rect. 21 14
182 51.23 humidity 60.0 270 > th dose independent rect. 7 14
188 51.25 temperature 20.0 270 > th dose independent rect. 11 10
198 51.28 humidity 90.0 270 > th dose independent rect. 21 8
210 51.29 radiation 1.0 270 < th dose dependent rect. 5 22
212 51.31 radiation 1.0 90 < th dose independent sin 12 NA
213 51.31 humidity 80.0 270 < th dose independent rect. 11 7
222 51.34 radiation 1.0 90 > th dose independent sin 14 NA
235 51.37 temperature 25.0 30 > th dose independent rect. 12 19
246 51.40 radiation 40.0 30 < th dose dependent sin 13 NA
260 51.44 wind 1.0 90 > th dose independent rect. 23 13
272 51.46 radiation 10.0 270 < th dose dependent rect. 16 11
287 51.50 temperature 30.0 720 < th dose independent rect. 23 20
291 51.51 radiation 1.0 270 < th dose independent rect. 9 18
302 51.53 temperature 20.0 270 > th dose independent rect. 11 20
324 51.58 radiation 1.0 270 < th dose independent rect. 16 11
326 51.58 humidity 90.0 270 < th dose dependent rect. 11 7
334 51.60 humidity 80.0 10 < th dose independent rect. 12 8
337 51.60 radiation 1.0 90 < th dose dependent sin 12 NA
353 51.63 temperature 15.0 270 > th dose independent rect. 21 14
366 51.65 humidity 90.0 270 < th dose independent rect. 22 13
381 51.67 temperature 30.0 720 < th dose independent rect. 5 6
392 51.69 temperature 30.0 270 < th dose independent sin 20 NA
397 51.69 humidity 70.0 270 > th dose independent rect. 6 21
410 51.71 temperature 30.0 720 < th dose independent rect. 23 18
426 51.74 precipitation 0.1 270 < th dose independent rect. 11 10
430 51.74 humidity 90.0 10 < th dose dependent rect. 12 8
431 51.74 precipitation 0.1 270 < th dose dependent rect. 11 10
454 51.78 temperature 30.0 720 < th dose independent rect. 13 6
473 51.78 radiation 40.0 270 < th dose dependent rect. 15 11
491 51.81 temperature 30.0 270 < th dose independent rect. 17 10
495 51.81 humidity 90.0 10 < th dose dependent rect. 12 11
548 51.88 humidity 90.0 270 > th dose dependent sin 15 NA
555 51.89 radiation 30.0 270 < th dose independent rect. 7 2
557 51.89 radiation 40.0 720 < th dose independent rect. 15 20
562 51.90 humidity 60.0 270 > th dose independent rect. 7 18
565 51.90 radiation 1.0 270 < th dose dependent rect. 9 18
569 51.91 humidity 90.0 30 < th dose independent rect. 12 11
570 51.91 radiation 20.0 270 < th dose independent rect. 15 11
574 51.91 radiation 1.0 270 < th dose dependent rect. 11 16
635 51.96 humidity 90.0 270 > th dose dependent rect. 13 14
637 51.97 radiation 1.0 90 < th dose independent sin 15 NA
686 52.02 radiation 1.0 30 < th dose dependent sin 14 NA
689 52.02 humidity 50.0 270 > th dose dependent rect. 7 12
705 52.05 radiation 1.0 270 > th dose independent sin 17 NA
707 52.05 temperature 30.0 720 < th dose independent rect. 15 2
720 52.06 temperature 15.0 90 > th dose independent rect. 23 13
754 52.09 wind 9.0 270 < th dose independent rect. 21 14
788 52.12 temperature 10.0 270 > th dose independent rect. 11 10
789 52.12 humidity 60.0 270 > th dose independent rect. 17 10
792 52.12 atmosphere 995.0 270 > th dose independent rect. 21 14
801 52.13 wind 1.0 270 > th dose independent rect. 7 3
802 52.13 wind 9.0 270 < th dose independent rect. 11 10
817 52.15 humidity 90.0 270 < th dose independent rect. 15 10
836 52.17 humidity 50.0 270 > th dose independent rect. 21 14
854 52.19 precipitation 0.1 270 < th dose independent rect. 21 14
858 52.19 precipitation 0.1 270 < th dose dependent rect. 21 14
905 52.23 wind 1.0 270 > th dose independent rect. 15 10
932 52.25 humidity 70.0 270 < th dose independent rect. 11 21
934 52.25 temperature 20.0 720 > th dose dependent rect. 12 1
986 52.30 wind 9.0 90 < th dose independent rect. 23 13
987 52.30 atmosphere 1015.0 90 < th dose independent rect. 23 13
988 52.30 radiation 30.0 270 < th dose independent rect. 7 18
1000 52.31 humidity 50.0 720 > th dose independent rect. 15 20