Os07g0264100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region domain containing protein.
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Os07g0264100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.25 | 0.275 | 10.1 | -1.13 | 0.635 | -0.884 | -0.0232 | 0.318 | -0.149 | 15.5 | 28.75 | 1780 | -- | -- |
| 34.22 | 0.272 | 10.1 | -1.06 | 0.632 | -0.865 | -0.0364 | -- | -0.131 | 15.5 | 28.7 | 1805 | -- | -- |
| 34.25 | 0.273 | 10.1 | -1.13 | 0.635 | -0.883 | -- | 0.319 | -0.149 | 15.5 | 28.75 | 1777 | -- | -- |
| 34.22 | 0.272 | 10.1 | -1.06 | 0.631 | -0.864 | -- | -- | -0.132 | 15.5 | 28.7 | 1805 | -- | -- |
| 55.44 | 0.347 | 10.1 | -1.45 | -- | -1.07 | -- | 1.28 | -0.259 | -- | 28.52 | 1822 | -- | -- |
| 60.97 | 0.366 | 10.1 | -0.798 | 0.729 | -- | -0.105 | -- | -0.00581 | 16 | -- | -- | -- | -- |
| 61 | 0.366 | 10.1 | -0.799 | 0.728 | -- | -- | -- | -0.00641 | 16 | -- | -- | -- | -- |
| 56.03 | 0.349 | 10.1 | -1.11 | -- | -0.964 | -- | -- | -0.171 | -- | 28.58 | 1853 | -- | -- |
| 61.75 | 0.366 | 10.1 | -- | 0.686 | -0.653 | -- | -- | -0.000783 | 15.6 | 28.7 | 1812 | -- | -- |
| 89.93 | 0.443 | 10.1 | -0.829 | -- | -- | -- | -- | -0.0258 | -- | -- | -- | -- | -- |
| 77.82 | 0.413 | 10 | -- | 0.744 | -- | -- | -- | 0.0826 | 16 | -- | -- | -- | -- |
| 84.45 | 0.429 | 10 | -- | -- | -0.56 | -- | -- | 0.0498 | -- | 28.58 | 1853 | -- | -- |
| 108.03 | 0.485 | 10 | -- | -- | -- | -- | -- | 0.0661 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 2 | 33.94 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 28 | 34.12 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 38 | 34.16 | temperature | 25 | 1440 | > th | dose dependent | sin | 23 | NA |
| 39 | 34.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 170 | 34.69 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 184 | 34.73 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 209 | 34.82 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 225 | 34.86 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 227 | 34.87 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 351 | 35.77 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 423 | 36.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 465 | 36.27 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 495 | 36.34 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 496 | 36.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 508 | 36.36 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 516 | 36.38 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 518 | 36.38 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 531 | 36.41 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 552 | 36.45 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 576 | 36.50 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 5 |
| 589 | 36.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 16 |
| 599 | 36.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 605 | 36.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 15 |
| 606 | 36.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 19 |
| 607 | 36.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 21 |
| 617 | 36.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 12 |
| 620 | 36.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 700 | 36.67 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 760 | 36.74 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 5 |
| 772 | 36.76 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 5 |
| 828 | 36.85 | temperature | 10 | 1440 | > th | dose dependent | sin | 22 | NA |
| 879 | 36.92 | temperature | 30 | 1440 | < th | dose independent | sin | 4 | NA |
| 893 | 36.93 | temperature | 10 | 720 | > th | dose dependent | sin | 2 | NA |
| 952 | 37.00 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 992 | 37.03 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |