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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0486900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Formate dehydrogenase, mitochondrial precursor (EC 1.2.1.2) (NAD- dependent formate dehydrogenase) (FDH).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0294) R2 : 0.00216
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0615 (0.0619) R2dN8 : 0.00279 R2N8 : 0.00216
σ : 0.554
deviance : 140.77
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.18 0.495 3.02 0.335 0.00105 0.375 0.879 3.06 0.2 17.7 0.3074 5791 -- --
123.79 0.518 3.11 0.275 0.0181 0.735 1.04 -- 0.125 17.4 1.857 9331 -- --
112.24 0.493 3.02 0.337 0.0135 0.361 -- 3.34 0.195 5.63 0.3 5466 -- --
125.22 0.521 3.12 0.172 0.0177 0.844 -- -- 0.0558 17.8 1.75 9646 -- --
112.2 0.493 3.02 0.325 -- 0.362 -- 3.46 0.201 -- 0.3 5466 -- --
132.45 0.54 3.12 0.48 0.0301 -- 0.887 -- 0.112 16.7 -- -- -- --
133.98 0.542 3.11 0.487 0.0988 -- -- -- 0.116 11.8 -- -- -- --
125.03 0.521 3.12 0.137 -- 0.892 -- -- 0.0596 -- 1.6 9663 -- --
125.39 0.522 3.13 -- 0.0114 0.976 -- -- 0.0364 5.67 1.6 9663 -- --
134.6 0.542 3.11 0.484 -- -- -- -- 0.115 -- -- -- -- --
140.23 0.554 3.12 -- 0.0932 -- -- -- 0.0622 11.5 -- -- -- --
125.39 0.522 3.13 -- -- 0.978 -- -- 0.0346 -- 1.595 9663 -- --
140.77 0.554 3.12 -- -- -- -- -- 0.0615 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 112.74 humidity 90.0 14400 < th dose independent rect. 3 4
3 113.03 wind 1.0 14400 < th dose dependent rect. 22 1
4 113.30 wind 1.0 14400 < th dose independent rect. 22 3
5 113.34 wind 1.0 14400 > th dose independent rect. 22 3
6 113.36 humidity 90.0 14400 < th dose independent rect. 23 8
8 113.42 humidity 90.0 14400 < th dose independent rect. 23 1
9 113.48 humidity 80.0 14400 > th dose dependent rect. 2 5
10 113.53 humidity 80.0 14400 > th dose dependent rect. 23 8
27 113.92 humidity 80.0 14400 > th dose dependent rect. 23 5
28 113.92 humidity 50.0 14400 > th dose dependent rect. 23 8
50 114.11 wind 7.0 10 > th dose dependent rect. 9 2
61 114.14 wind 1.0 14400 < th dose independent rect. 22 1
66 114.16 wind 1.0 14400 < th dose dependent rect. 22 5
72 114.20 precipitation 0.1 43200 < th dose independent rect. 3 1
73 114.20 precipitation 0.1 43200 < th dose dependent rect. 3 1
74 114.21 humidity 80.0 14400 > th dose dependent rect. 2 1
81 114.23 precipitation 0.1 43200 > th dose independent rect. 3 1
83 114.23 humidity 90.0 14400 < th dose dependent rect. 23 1
93 114.29 humidity 50.0 14400 > th dose dependent rect. 23 5
96 114.30 humidity 80.0 14400 > th dose dependent rect. 23 2
98 114.31 humidity 80.0 43200 > th dose independent rect. 7 4
101 114.34 humidity 50.0 14400 > th dose dependent rect. 23 2
105 114.37 humidity 70.0 43200 > th dose dependent rect. 8 1
113 114.39 precipitation 0.1 43200 > th dose dependent rect. 3 1
164 114.61 wind 7.0 10 > th dose independent rect. 9 2
178 114.65 humidity 80.0 43200 < th dose independent rect. 7 5
183 114.67 precipitation 0.1 43200 > th dose dependent rect. 1 5
188 114.71 humidity 90.0 14400 > th dose independent rect. 4 3
190 114.71 precipitation 0.1 43200 > th dose independent rect. 23 6
198 114.73 wind 1.0 43200 < th dose independent rect. 12 2
204 114.74 precipitation 0.1 43200 < th dose independent rect. 23 6
208 114.74 precipitation 0.1 43200 < th dose dependent rect. 23 6
209 114.74 precipitation 0.1 43200 > th dose dependent rect. 23 7
212 114.75 humidity 90.0 14400 > th dose independent rect. 5 1
238 114.81 humidity 90.0 14400 > th dose independent rect. 23 8
301 114.98 humidity 90.0 14400 < th dose dependent rect. 22 3
328 115.08 wind 7.0 10 > th dose dependent rect. 2 9
338 115.10 humidity 90.0 14400 < th dose dependent rect. 6 1
377 115.20 humidity 80.0 43200 < th dose independent sin 3 NA
401 115.25 humidity 90.0 14400 > th dose independent rect. 23 2
406 115.25 humidity 90.0 14400 < th dose dependent rect. 22 10
417 115.27 humidity 80.0 43200 < th dose independent rect. 22 20
422 115.29 wind 1.0 43200 > th dose independent rect. 12 2
423 115.29 wind 7.0 10 > th dose independent rect. 2 9
433 115.30 humidity 80.0 43200 < th dose independent rect. 3 12
459 115.36 humidity 80.0 43200 > th dose independent sin 3 NA
496 115.44 humidity 80.0 43200 > th dose independent rect. 23 19
517 115.46 humidity 80.0 43200 > th dose independent rect. 22 21
558 115.54 wind 1.0 14400 < th dose independent rect. 9 18
573 115.56 humidity 80.0 43200 < th dose independent rect. 18 2
579 115.57 humidity 80.0 43200 > th dose independent rect. 18 2
594 115.59 precipitation 0.1 43200 > th dose independent rect. 23 1
595 115.59 precipitation 0.1 43200 > th dose dependent rect. 23 1
597 115.60 precipitation 0.1 43200 < th dose independent rect. 23 1
599 115.60 precipitation 0.1 43200 < th dose dependent rect. 23 1
604 115.61 wind 1.0 14400 < th dose dependent rect. 17 10
617 115.64 humidity 90.0 14400 < th dose dependent rect. 21 7
706 115.73 wind 1.0 14400 > th dose independent rect. 8 19
740 115.77 humidity 70.0 43200 > th dose dependent sin 6 NA
761 115.79 wind 1.0 14400 < th dose dependent rect. 11 16
773 115.81 humidity 80.0 43200 < th dose independent rect. 16 5
781 115.82 wind 1.0 14400 < th dose independent rect. 11 16
790 115.83 humidity 80.0 43200 > th dose independent rect. 6 15
800 115.85 humidity 80.0 43200 > th dose independent rect. 17 4
860 115.89 radiation 1.0 43200 < th dose dependent rect. 23 7
871 115.89 wind 1.0 14400 < th dose dependent rect. 9 18
886 115.91 radiation 1.0 43200 < th dose independent rect. 18 12
914 115.93 radiation 1.0 43200 < th dose dependent rect. 4 2
998 116.01 radiation 1.0 43200 > th dose independent rect. 18 12