Os08g0447000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain containing protein.
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Os08g0447000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.92 | 0.404 | 11.8 | -0.745 | 0.109 | 0.111 | -0.621 | 3.03 | -0.0052 | 23.3 | 60.55 | 1617 | -- | -- |
| 83.61 | 0.426 | 11.8 | -0.56 | 0.119 | 0.621 | -0.369 | -- | 0.175 | 0.378 | 47.99 | 22563 | -- | -- |
| 75.03 | 0.403 | 11.8 | -0.72 | 0.0993 | 0.13 | -- | 3.18 | 0.00264 | 23.2 | 59 | 1897 | -- | -- |
| 82.97 | 0.424 | 11.8 | -0.584 | 0.119 | 0.711 | -- | -- | 0.138 | 23.1 | 34.06 | 24930 | -- | -- |
| 75.8 | 0.405 | 11.8 | -0.714 | -- | 0.108 | -- | 3.16 | -0.00669 | -- | 58.14 | 1901 | -- | -- |
| 90.15 | 0.445 | 11.8 | -0.407 | 0.0867 | -- | -0.51 | -- | 0.0402 | 21.7 | -- | -- | -- | -- |
| 91.01 | 0.447 | 11.8 | -0.389 | 0.0978 | -- | -- | -- | 0.0398 | 23.7 | -- | -- | -- | -- |
| 83.81 | 0.426 | 11.8 | -0.57 | -- | 0.671 | -- | -- | 0.14 | -- | 33 | 24744 | -- | -- |
| 90.28 | 0.443 | 11.8 | -- | 0.127 | 0.504 | -- | -- | 0.214 | 23 | 67.81 | 23726 | -- | -- |
| 91.61 | 0.447 | 11.8 | -0.386 | -- | -- | -- | -- | 0.0409 | -- | -- | -- | -- | -- |
| 95 | 0.456 | 11.8 | -- | 0.0934 | -- | -- | -- | 0.0831 | 23.5 | -- | -- | -- | -- |
| 84.19 | 0.427 | 11.8 | -- | -- | 0.548 | -- | -- | 0.272 | -- | 91 | 47520 | -- | -- |
| 95.55 | 0.456 | 11.8 | -- | -- | -- | -- | -- | 0.0838 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.82 | temperature | 30 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 33 | 72.48 | temperature | 10 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 143 | 73.02 | temperature | 30 | 14400 | < th | dose dependent | sin | 23 | NA |
| 276 | 73.35 | humidity | 80 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 280 | 73.36 | humidity | 80 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 311 | 73.42 | temperature | 10 | 14400 | > th | dose dependent | sin | 22 | NA |
| 315 | 73.42 | humidity | 80 | 1440 | > th | dose dependent | rect. | 7 | 14 |
| 331 | 73.45 | humidity | 80 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 353 | 73.48 | humidity | 80 | 1440 | > th | dose dependent | sin | 23 | NA |
| 358 | 73.48 | humidity | 80 | 1440 | > th | dose dependent | rect. | 7 | 10 |
| 418 | 73.56 | temperature | 25 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 444 | 73.59 | humidity | 80 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 520 | 73.66 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 530 | 73.67 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 15 |
| 544 | 73.68 | humidity | 70 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 566 | 73.70 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 5 |
| 593 | 73.72 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 607 | 73.73 | temperature | 25 | 14400 | > th | dose independent | rect. | 1 | 16 |
| 625 | 73.75 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 641 | 73.76 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 669 | 73.77 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 16 |
| 737 | 73.82 | temperature | 25 | 14400 | < th | dose independent | rect. | 2 | 15 |
| 756 | 73.83 | temperature | 25 | 14400 | < th | dose independent | rect. | 8 | 5 |
| 758 | 73.83 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 8 |
| 792 | 73.85 | temperature | 25 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 817 | 73.86 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 878 | 73.89 | temperature | 25 | 14400 | > th | dose independent | sin | 2 | NA |
| 884 | 73.89 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 6 |
| 971 | 73.93 | temperature | 30 | 14400 | < th | dose dependent | no | NA | NA |