BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0570900 Os05g0570900|Os05g0570900
(181 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0570900 Cupredoxin domain containing protein 233 6e-62
Os03g0791366 78 4e-15
Os03g0648500 Cupredoxin domain containing protein 76 1e-14
Os02g0653200 Plastocyanin-like domain containing protein 73 1e-13
Os04g0545600 Similar to Uclacyanin 3-like protein 73 1e-13
Os07g0105000 Cupredoxin domain containing protein 72 2e-13
Os08g0137400 Cupredoxin domain containing protein 72 3e-13
Os08g0138100 70 1e-12
Os08g0138200 Cupredoxin domain containing protein 69 2e-12
Os07g0165900 69 2e-12
Os03g0807500 Cupredoxin domain containing protein 68 4e-12
Os06g0218600 Cupredoxin domain containing protein 68 4e-12
Os09g0469300 Cupredoxin domain containing protein 67 8e-12
Os08g0137800 Cupredoxin domain containing protein 66 1e-11
Os09g0557900 Similar to Protein phosphatase 2C gamma isofor... 65 3e-11
Os01g0272700 63 9e-11
>Os05g0570900 Cupredoxin domain containing protein
Length = 181
Score = 233 bits (594), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 111/130 (85%), Positives = 111/130 (85%)
Query: 1 MASRTQYXXXXXXXXXXXXXXXXXXXVYHIIGAGKGWRMAPNKTYYADWARTRNISVGDK 60
MASRTQY VYHIIGAGKGWRMAPNKTYYADWARTRNISVGDK
Sbjct: 1 MASRTQYAFLLLSAFMASLFAGSAAGVYHIIGAGKGWRMAPNKTYYADWARTRNISVGDK 60
Query: 61 LMFLYRSGVYNIVEVPTKELFDACSMRNITNRWQNGPTIIELTQPGPRYYFCGVGKHCEE 120
LMFLYRSGVYNIVEVPTKELFDACSMRNITNRWQNGPTIIELTQPGPRYYFCGVGKHCEE
Sbjct: 61 LMFLYRSGVYNIVEVPTKELFDACSMRNITNRWQNGPTIIELTQPGPRYYFCGVGKHCEE 120
Query: 121 GEKVAINVSV 130
GEKVAINVSV
Sbjct: 121 GEKVAINVSV 130
>Os03g0791366
Length = 172
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 29 HIIGAGKGWRMAPNKTYYADWARTRNISVGDKLMFLYRSGVYNIVEVPTKELFDACSMRN 88
H++G G GW + + YA WA T+ VGD L+F Y+ + +VEV + F AC+
Sbjct: 30 HMVGDGNGWILGFD---YAAWAATKQFRVGDTLVFRYKGTNHTVVEVGGAD-FKACNKTA 85
Query: 89 ITNRWQNGPTIIELTQPGPRYYFCGVGKHCEEGEKVAINV 128
N W +G + L + G R++FCGVG HC + K+ I V
Sbjct: 86 SANEWSSGEDRVALDKEGRRWFFCGVGDHCAKNMKLKITV 125
>Os03g0648500 Cupredoxin domain containing protein
Length = 142
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 29 HIIGAGKGWRMAPNKTYYADWARTRNISVGDKLMFLYRSGVYNIVEVPTKELFDACSMRN 88
H++G G W + P Y WA R GD L+F + +G+YN+V+V +E FD C+ +
Sbjct: 41 HVVG-GSIWSIPPRPGLYRAWADNRTFVAGDNLVFRFETGMYNVVQVGRRE-FDDCTADD 98
Query: 89 ITNRWQNGPTIIELTQPGPRYYFCGVGKHCEEGEKVAI 126
W +GP ++ L RY+ C VG +C G KV +
Sbjct: 99 PYRDWTDGPAVVTLGSAAVRYFICTVGNYCSLGVKVYV 136
>Os02g0653200 Plastocyanin-like domain containing protein
Length = 202
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 29 HIIGAGKGWRMAPNKTYYADWARTRNISVGDKLMFLYRSGVYNIVEVPTKELFDACSMRN 88
+ +G GW + Y WA+++ SVGD L+F Y S ++ + EV + + + ACS N
Sbjct: 28 YTVGDTSGWSSGVD---YDTWAKSKTFSVGDSLVFQY-SMMHTVAEVSSAD-YSACSASN 82
Query: 89 ITNRWQNGPTIIELTQPGPRYYFCGVGKHCEEGEKVAINV 128
+ + T I LT+PG RY+ CG HC G K+A+ V
Sbjct: 83 SIQSYSDQNTKIALTKPGTRYFICGTSGHCSGGMKLAVTV 122
>Os04g0545600 Similar to Uclacyanin 3-like protein
Length = 191
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 29 HIIGAGKGWRMAPNKTYYADWARTRNISVGDKLMFLYRSGVYNIVEVPTKELFDACSMRN 88
+ +G GW + Y WAR + ++GD L+F Y S +++VEV + +CS N
Sbjct: 36 YTVGDSSGWTTGVD---YTAWARGKTFNIGDTLLFQYTSAGHSVVEVSEAD-HTSCSAAN 91
Query: 89 ITNRWQNGPTIIELTQPGPRYYFCGVGKHCEEGEKVAINVSV 130
+++G TI+ LT+ G RY+ CG HC G K+ + V+
Sbjct: 92 PLRSYKDGTTIVTLTRSGTRYFICGSTGHCGAGMKLTVTVAT 133
>Os07g0105000 Cupredoxin domain containing protein
Length = 195
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 29 HIIGAGKGWRMAPNKTYYADWARTRNISVGDKLMFLYRSGVYNIVEVPTKELFDACSMRN 88
H +G W N Y W+ ++ S GD ++F Y S +++VEVP K +DACS N
Sbjct: 28 HPVGGNGAWDTTGN---YNAWSVSQKFSQGDSILFTYPSS-HDVVEVP-KASYDACSPAN 82
Query: 89 ITNRWQNGPTIIELTQPGPRYYFCGVGKHCEEGEKVAINVSV 130
+ G T ++L PG Y+ CGV HC G K+ + V+
Sbjct: 83 ALASYTGGSTTVKLDAPGKHYFICGVPGHCAAGMKLEVTVAA 124
>Os08g0137400 Cupredoxin domain containing protein
Length = 174
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 29 HIIGAGKG-WRMAPNKTYYADWARTRNISVGDKLMFLYRSGVYNIVEVPTKELFDACSMR 87
+ +GA G W M +T Y +W R GDKL F Y ++++VEV TK +DACS
Sbjct: 36 YTVGAPDGLWDM---ETDYKEWVARRTFHPGDKLTFTYSRELHDVVEV-TKAGYDACSNA 91
Query: 88 NITNRWQNGPTIIELTQPGPRYYFCGVGKHCEEGEKVAINV 128
N + +++G ++ LT G RY+ CG+ HC G K+ I+V
Sbjct: 92 NNISAFRSGNDLVALTAVGTRYFLCGLTGHCGSGMKIRIDV 132
>Os08g0138100
Length = 195
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 42 NKTYYADWARTRNISVGDKLMFLYRSGVYNIVEVPTKELFDACSMRNITNRWQNGPTIIE 101
+T YA W VGD+L+F Y +++VEV TK +D+CS + +G +
Sbjct: 40 TRTNYAQWVSAVTFRVGDQLVFKYSPAAHDVVEV-TKAGYDSCSSSGPVATFNSGDDTVP 98
Query: 102 LTQPGPRYYFCGVGKHCEEGEKVAINV 128
LT G RY+ CG HC G K+A+ V
Sbjct: 99 LTATGTRYFMCGFPGHCAAGMKIAVKV 125
>Os08g0138200 Cupredoxin domain containing protein
Length = 190
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 42 NKTYYADWARTRNISVGDKLMFLYRSGVYNIVEVPTKELFDACSMRNITNRWQNGPTIIE 101
+T YA WA GD+L+F Y +++VEV TK +DACS + + +G +
Sbjct: 41 TRTNYAQWASAATFRAGDRLVFRYSPAAHDVVEV-TKAGYDACSAASPIATFNSGDDTVP 99
Query: 102 LTQPGPRYYFCGVGKHCEEGEKVAINV 128
L G RY+ CG HC G K+A+ V
Sbjct: 100 LAAVGTRYFICGFPGHCAAGMKLAVKV 126
>Os07g0165900
Length = 168
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 29 HIIGAGKGWRMAPNKTYYADWARTRNISVGDKLMFLYRSGVYNIVEVPTKELFDACSMR- 87
+ +G G GW + T +WA ++ +GDKL+F Y G + + EV F AC+ +
Sbjct: 27 YTVGDGHGWTLEYPST---NWADGKSFQIGDKLVFTYTKGKHTVTEVDGAA-FHACNRQG 82
Query: 88 NITNRWQNGPTIIELTQPGPRYYFCGVGKHCEEGEKVAINVS 129
N W +G + L + G R++FC V HCE G K+ ++V+
Sbjct: 83 NTLMTWNSGNDTVALDKAGKRWFFCNVDNHCELGMKLVVDVA 124
>Os03g0807500 Cupredoxin domain containing protein
Length = 209
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 31 IGAGKGWRMAPNKTYYADWARTRNISVGDKLMFLYRSGVYNIVEVPTKELFDACSMRNIT 90
+G GW + N Y DWA + VGD + F Y G++N+VEV K +D+C+ +
Sbjct: 28 VGDTSGWTILGN-VNYTDWAVKKTFHVGDTIEFKYPQGIHNVVEVK-KADYDSCTNSSPI 85
Query: 91 NRWQNGPTIIELTQPGPRYYFCGVGKHCEEGEKVAINV 128
+G I + G R++ CGV HC G+KV I V
Sbjct: 86 ATHTSGDDKIAIKAAGHRFFICGVPGHCAAGQKVNIRV 123
>Os06g0218600 Cupredoxin domain containing protein
Length = 198
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 29 HIIGAGKGWRMAPNKTYYADWARTRNISVGDKLMFLYRSGVYNIVEVPTKELFDACSMRN 88
+ +G GW M + Y WA + +GD L+F Y G +++ EV + + AC+ N
Sbjct: 25 YTVGDTSGWAMGAD---YTTWASDKKFKMGDTLVFNYAGGAHSVDEVSAAD-YAACTASN 80
Query: 89 ITNRWQNGPTIIELTQPGPRYYFCGVGKHCEEGEKVAINV 128
+G T + L G Y+ CG+ HC G K+ ++V
Sbjct: 81 ALQSDSSGTTTVTLKTAGKHYFICGIAGHCSNGMKLVVDV 120
>Os09g0469300 Cupredoxin domain containing protein
Length = 152
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 29 HIIGAGKGWRMAPNKTYYADWARTRNISVGDKLMFLYRSGVYNIVEVPTKELFDACSMRN 88
+ +G G+GW N Y +WA + GD+L+F Y++ + + EV ++ FD+C+ +
Sbjct: 25 YTVGDGEGWTTGVN---YNNWANGKFFRQGDELVFNYQARAHTVTEV-SQTNFDSCNGNS 80
Query: 89 ITNRWQNGPTIIELTQPGPRYYFCGVGKHCEEGEKVAINVS 129
+ G T I L+ PG Y+ C + HC G K+A+NV+
Sbjct: 81 PLSNDNGGSTTIRLSYPGMHYFICTIPGHCSSGMKLAVNVN 121
>Os08g0137800 Cupredoxin domain containing protein
Length = 190
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 29 HIIGAGKG-WRMAPNKTYYADWARTRNISVGDKLMFLYRSGVYNIVEVPTKELFDACSMR 87
+ +GA G W + +T Y W N GD+++F Y +++VEV K +D+CS
Sbjct: 27 YTVGAPSGSWDL---RTNYDQWVSNINFRAGDQIVFKYSPAAHDVVEV-NKADYDSCSSS 82
Query: 88 NITNRWQNGPTIIELTQPGPRYYFCGVGKHCEEGEKVAINV 128
+ + +G I LT G RY+ CG HC G KVA+ V
Sbjct: 83 SPIATFNSGDDTIPLTATGTRYFICGFNGHCTGGMKVAVKV 123
>Os09g0557900 Similar to Protein phosphatase 2C gamma isoform (EC 3.1.3.16)
(PP2C-gamma) (Protein phosphatase magnesium-dependent 1
gamma) (Protein phosphatase 1C) (Fibroblast growth
factor inducible protein 13) (FIN13)
Length = 168
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 29 HIIGAGKGWRMAPNKTYYADWARTRNISVGDKLMFLYRSGVYNIVEVPTKELFDACSMRN 88
HI+GA GW PN Y + W+ + VGD + F Y+ G +N+ EV + +D C+M
Sbjct: 24 HIVGANHGWN--PNIDY-SLWSGNQTFYVGDLISFRYQKGTHNVFEV-NQTGYDNCTMAG 79
Query: 89 ITNRWQNGPTIIELTQPGPRYYFCGVGKHCEEGEKVAINV 128
+ W +G I L Y+ CG G C+ G KVAI V
Sbjct: 80 VAGNWTSGKDFIPLNDSRRYYFICGNG-FCQAGMKVAITV 118
>Os01g0272700
Length = 224
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 27 VYHIIGAGKGWRMAPNKTYYADWARTRNISVGDKLMFLYRSGVYNIVEVPTKELFDACSM 86
V+H+ G +GWR+ T Y WA VGD L F Y G + V V +E FD C+
Sbjct: 62 VFHV-GGPRGWRVPDANTSYTWWAMNNRFHVGDSLYFRYGGG--DSVLVVDREAFDGCNA 118
Query: 87 RNITNRWQNGPTIIELTQPGPRYYFCGVGKHCEEGEKVAINVSV 130
R+ G T + L +PG + G HC+ G+++ + V V
Sbjct: 119 TEPVARFAGGATTVPLGRPGFFCFISGAPGHCDGGQRLIVRVMV 162
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,120,727
Number of extensions: 151264
Number of successful extensions: 306
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 18
Length of query: 181
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 86
Effective length of database: 12,075,471
Effective search space: 1038490506
Effective search space used: 1038490506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)