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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0648500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cupredoxin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.46 (0.0385) R2 : 0.148
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.831 (0.0939) R2dC : 0.146 R2C : 0.147
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0624 (0.0812) R2dN8 : 0.00143 R2N8 : 0.00164
σ : 0.727
deviance : 241.74
__
_____
C
peak time of C : 2.02
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
229.01 0.711 3.47 -0.468 0.194 -0.858 3.77 -3.06 0.0168 13.1 1.02 269 -- --
233.16 0.711 3.44 -0.301 0.0842 -0.66 0.638 -- 0.0803 9.45 1.017 251 -- --
234.3 0.713 3.47 -0.387 0.783 -0.349 -- -0.971 0.0687 0.797 14.44 814 -- --
233.48 0.712 3.47 -0.382 0.77 -0.358 -- -- 0.0713 0.824 40.4 820 -- --
234.67 0.713 3.47 -0.27 -- -0.712 -- -0.116 0.0387 -- 1.921 238 -- --
237.99 0.723 3.47 -0.37 0.837 -- -0.281 -- 0.0207 1.98 -- -- -- --
238.29 0.723 3.47 -0.362 0.838 -- -- -- 0.0221 2.03 -- -- -- --
234.19 0.713 3.46 -0.318 -- -0.714 -- -- 0.0531 -- 1.75 234 -- --
235.49 0.715 3.45 -- 0.78 -0.486 -- -- 0.149 0.581 40.24 835 -- --
280.45 0.783 3.46 -0.327 -- -- -- -- 0.0419 -- -- -- -- --
241.74 0.727 3.46 -- 0.831 -- -- -- 0.0624 2.02 -- -- -- --
236.87 0.717 3.45 -- -- -0.721 -- -- 0.086 -- 1.74 239 -- --
283.27 0.786 3.45 -- -- -- -- -- 0.0781 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 227.29 humidity 90.0 1440 > th dose dependent rect. 4 1
2 227.39 humidity 90.0 30 < th dose independent rect. 7 16
3 227.70 wind 9.0 720 < th dose independent rect. 7 18
4 227.82 radiation 1.0 270 > th dose independent rect. 13 23
5 227.83 humidity 50.0 1440 > th dose dependent rect. 4 1
6 227.85 wind 9.0 720 < th dose independent rect. 13 6
7 227.87 temperature 30.0 90 < th dose independent rect. 18 13
12 228.17 radiation 40.0 720 > th dose independent rect. 13 20
14 228.26 wind 9.0 720 < th dose independent rect. 7 10
15 228.26 humidity 60.0 90 > th dose independent rect. 11 20
16 228.26 humidity 60.0 720 > th dose dependent rect. 22 3
17 228.27 radiation 40.0 720 < th dose dependent rect. 1 6
18 228.29 humidity 70.0 30 > th dose independent rect. 19 12
20 228.43 radiation 40.0 720 > th dose independent rect. 13 2
42 228.55 wind 3.0 720 > th dose independent rect. 13 4
43 228.55 humidity 50.0 270 > th dose independent rect. 8 23
44 228.55 radiation 1.0 720 < th dose dependent rect. 3 17
47 228.62 wind 1.0 720 > th dose independent rect. 13 6
50 228.64 radiation 1.0 270 < th dose independent rect. 17 14
51 228.65 radiation 1.0 270 < th dose independent rect. 17 22
52 228.66 wind 9.0 720 < th dose independent rect. 5 14
54 228.71 temperature 25.0 720 > th dose dependent rect. 6 1
59 228.74 radiation 1.0 270 < th dose independent rect. 17 18
63 228.78 radiation 20.0 720 > th dose independent rect. 15 2
67 228.78 temperature 10.0 720 > th dose independent rect. 1 6
68 228.78 temperature 10.0 720 > th dose independent rect. 13 6
69 228.78 temperature 30.0 720 < th dose independent rect. 1 6
70 228.78 humidity 50.0 720 > th dose independent rect. 1 6
72 228.78 atmosphere 995.0 720 > th dose independent rect. 1 6
73 228.78 atmosphere 1015.0 720 < th dose independent rect. 13 6
75 228.78 radiation 40.0 720 < th dose independent rect. 1 6
85 228.78 temperature 10.0 720 > th dose independent rect. 7 18
86 228.78 temperature 10.0 720 > th dose independent rect. 19 18
87 228.78 atmosphere 995.0 720 > th dose independent rect. 19 18
88 228.80 wind 9.0 720 < th dose independent rect. 1 6
89 228.80 radiation 1.0 720 < th dose independent rect. 3 17
90 228.81 radiation 20.0 720 < th dose independent rect. 1 6
94 228.82 wind 1.0 270 > th dose independent rect. 9 22
113 228.87 radiation 1.0 270 < th dose independent rect. 8 23
130 228.96 wind 3.0 270 < th dose independent rect. 7 1
135 228.98 temperature 30.0 720 < th dose independent rect. 10 4
140 229.02 radiation 1.0 720 < th dose dependent rect. 19 10
142 229.04 atmosphere 1015.0 720 < th dose independent rect. 1 6
143 229.04 temperature 10.0 1440 > th dose independent rect. 8 12
146 229.04 temperature 10.0 1440 > th dose independent rect. 20 12
149 229.04 temperature 30.0 1440 < th dose independent rect. 20 12
153 229.04 humidity 50.0 1440 > th dose independent rect. 20 12
158 229.04 atmosphere 995.0 1440 > th dose independent rect. 20 12
159 229.05 humidity 50.0 720 > th dose independent rect. 17 14
161 229.08 radiation 1.0 720 > th dose independent sin 12 NA
162 229.08 wind 5.0 270 < th dose dependent rect. 7 1
163 229.08 temperature 10.0 270 > th dose dependent rect. 14 11
164 229.08 radiation 20.0 720 > th dose dependent rect. 14 18
166 229.10 radiation 1.0 270 > th dose independent no NA NA
167 229.10 temperature 15.0 90 > th dose independent rect. 19 12
168 229.10 radiation 10.0 90 < th dose independent rect. 19 13
169 229.10 radiation 1.0 270 > th dose independent rect. 4 15
226 229.12 wind 9.0 720 < th dose dependent rect. 7 1
227 229.13 radiation 1.0 270 < th dose independent no NA NA
228 229.13 humidity 90.0 270 < th dose independent rect. 4 1
232 229.14 radiation 1.0 720 > th dose independent rect. 15 17
233 229.14 radiation 1.0 270 < th dose independent rect. 12 19
235 229.14 radiation 1.0 270 < th dose independent rect. 12 23
237 229.15 radiation 1.0 720 < th dose independent rect. 19 10
241 229.15 temperature 30.0 90 < th dose independent rect. 11 20
256 229.17 radiation 40.0 720 < th dose dependent rect. 17 14
266 229.21 temperature 30.0 720 < th dose independent rect. 1 13
276 229.26 radiation 30.0 720 > th dose dependent rect. 13 3
306 229.33 temperature 30.0 720 < th dose independent rect. 12 1
326 229.36 radiation 20.0 720 < th dose independent rect. 15 7
327 229.36 temperature 10.0 720 > th dose independent rect. 19 10
328 229.36 temperature 30.0 720 < th dose independent rect. 19 10
329 229.36 humidity 50.0 720 > th dose independent rect. 19 10
330 229.36 atmosphere 995.0 720 > th dose independent rect. 19 10
334 229.36 temperature 10.0 720 > th dose independent rect. 5 14
335 229.36 atmosphere 1015.0 720 < th dose independent rect. 5 14
338 229.37 radiation 1.0 720 < th dose dependent sin 0 NA
354 229.39 humidity 80.0 720 < th dose independent rect. 12 1
364 229.43 temperature 10.0 720 > th dose independent rect. 7 10
365 229.43 atmosphere 1015.0 720 < th dose independent rect. 7 10
366 229.43 temperature 10.0 720 > th dose independent rect. 17 14
367 229.43 radiation 40.0 720 < th dose independent rect. 17 14
370 229.43 temperature 10.0 90 > th dose dependent rect. 7 12
372 229.44 radiation 1.0 270 < th dose dependent rect. 16 23
378 229.47 radiation 1.0 270 < th dose dependent no NA NA
381 229.48 radiation 1.0 270 < th dose dependent rect. 12 23
384 229.50 wind 9.0 90 < th dose independent rect. 7 12
391 229.51 radiation 1.0 270 < th dose independent rect. 1 23
398 229.54 humidity 90.0 720 > th dose independent rect. 22 4
403 229.55 temperature 15.0 720 > th dose independent rect. 19 1
406 229.55 radiation 10.0 720 < th dose dependent rect. 17 5
410 229.56 radiation 10.0 270 < th dose dependent rect. 16 13
414 229.57 wind 9.0 720 < th dose independent rect. 13 14
420 229.58 radiation 1.0 270 < th dose dependent rect. 8 23
422 229.59 temperature 25.0 720 > th dose independent rect. 6 1
453 229.60 temperature 15.0 30 > th dose dependent rect. 7 21
455 229.61 radiation 40.0 720 > th dose independent sin 13 NA
456 229.61 precipitation 0.1 90 < th dose independent rect. 7 12
460 229.61 precipitation 0.1 90 < th dose dependent rect. 7 12
470 229.62 temperature 30.0 270 < th dose independent rect. 9 22
471 229.62 temperature 15.0 30 > th dose dependent rect. 7 19
473 229.63 atmosphere 1005.0 30 > th dose dependent rect. 4 4
479 229.64 wind 1.0 270 > th dose independent rect. 1 13
486 229.68 radiation 1.0 720 > th dose independent rect. 12 1
488 229.69 radiation 40.0 720 < th dose independent rect. 15 10
496 229.72 atmosphere 995.0 720 > th dose independent rect. 7 10
497 229.72 radiation 40.0 1440 < th dose independent rect. 20 12
511 229.76 temperature 25.0 90 > th dose dependent rect. 4 2
515 229.78 humidity 60.0 270 > th dose independent rect. 10 11
516 229.80 temperature 30.0 10 < th dose independent rect. 7 23
518 229.81 wind 9.0 720 < th dose independent rect. 21 22
519 229.81 radiation 20.0 720 > th dose dependent sin 13 NA
523 229.82 wind 3.0 720 > th dose independent rect. 14 1
524 229.82 temperature 15.0 10 > th dose independent rect. 12 12
527 229.82 radiation 1.0 270 < th dose dependent rect. 1 23
529 229.84 radiation 20.0 720 > th dose independent sin 13 NA
537 229.86 radiation 1.0 720 > th dose independent rect. 10 4
543 229.87 wind 9.0 720 < th dose independent rect. 15 10
546 229.88 temperature 15.0 10 > th dose dependent rect. 16 10
556 229.91 wind 9.0 270 < th dose independent rect. 14 12
577 229.93 precipitation 0.1 720 < th dose independent rect. 1 6
581 229.93 precipitation 0.1 720 < th dose dependent rect. 1 6
585 229.94 atmosphere 1005.0 30 > th dose independent rect. 4 4
589 229.95 wind 9.0 4320 < th dose independent rect. 23 1
593 229.96 temperature 15.0 720 > th dose independent rect. 18 20
596 229.97 wind 9.0 720 < th dose independent rect. 19 10
598 229.97 wind 3.0 10 < th dose dependent rect. 20 1
603 229.98 precipitation 0.1 720 < th dose independent rect. 19 10
608 229.98 atmosphere 1005.0 30 > th dose dependent rect. 2 6
609 229.98 precipitation 0.1 720 < th dose dependent rect. 19 10
612 229.99 precipitation 0.1 720 < th dose independent rect. 13 5
613 229.99 humidity 60.0 10 > th dose independent rect. 12 12
616 229.99 temperature 15.0 720 > th dose independent rect. 8 23
618 229.99 precipitation 0.1 720 < th dose dependent rect. 13 5
619 229.99 temperature 10.0 10 > th dose dependent rect. 16 12
625 230.01 temperature 25.0 720 > th dose independent rect. 1 7
632 230.02 humidity 90.0 90 < th dose independent rect. 7 12
640 230.04 temperature 10.0 90 > th dose independent rect. 7 12
645 230.04 atmosphere 995.0 90 > th dose independent rect. 19 12
646 230.04 atmosphere 1015.0 90 < th dose independent rect. 7 12
647 230.04 radiation 40.0 90 < th dose independent rect. 19 12
660 230.06 precipitation 0.1 270 < th dose independent rect. 14 12
661 230.06 radiation 20.0 10 < th dose independent rect. 19 13
662 230.06 precipitation 0.1 270 < th dose dependent rect. 14 12
670 230.07 radiation 1.0 720 < th dose dependent rect. 3 13
676 230.09 temperature 25.0 720 < th dose independent rect. 24 1
678 230.09 humidity 80.0 720 > th dose dependent rect. 20 20
685 230.12 temperature 30.0 720 > th dose independent rect. 13 1
687 230.12 wind 9.0 90 < th dose independent rect. 19 12
690 230.12 wind 9.0 720 < th dose dependent rect. 22 3
696 230.13 humidity 90.0 1440 > th dose independent rect. 20 20
710 230.19 temperature 25.0 720 > th dose independent rect. 4 3
713 230.20 precipitation 0.1 720 < th dose independent rect. 7 10
718 230.20 precipitation 0.1 720 < th dose dependent rect. 7 10
736 230.22 temperature 15.0 270 > th dose independent rect. 2 12
739 230.22 wind 9.0 720 < th dose independent rect. 5 22
774 230.26 radiation 20.0 90 < th dose dependent rect. 19 13
794 230.29 precipitation 0.1 720 < th dose independent rect. 19 18
811 230.29 precipitation 0.1 720 < th dose dependent rect. 19 18
817 230.31 temperature 25.0 90 > th dose independent rect. 4 2
841 230.33 radiation 1.0 720 < th dose independent sin 1 NA
847 230.33 temperature 25.0 30 > th dose independent rect. 1 6
852 230.33 temperature 10.0 720 > th dose dependent rect. 7 1
853 230.33 atmosphere 1005.0 10 < th dose dependent rect. 19 1
878 230.34 radiation 1.0 270 > th dose independent rect. 16 23
891 230.36 atmosphere 1010.0 10 < th dose independent rect. 12 12
895 230.36 humidity 80.0 1440 > th dose dependent rect. 3 18
910 230.39 wind 9.0 4320 > th dose independent rect. 21 1
917 230.39 radiation 1.0 90 > th dose independent rect. 7 22
924 230.40 atmosphere 995.0 4320 > th dose independent rect. 1 1
927 230.40 wind 1.0 90 > th dose independent rect. 11 20
934 230.41 atmosphere 1015.0 720 < th dose dependent rect. 19 1
949 230.43 humidity 70.0 720 > th dose independent rect. 7 1
952 230.43 precipitation 0.1 720 < th dose independent rect. 5 14
953 230.43 radiation 30.0 720 < th dose independent rect. 10 20
956 230.43 precipitation 0.1 720 < th dose dependent rect. 5 14
960 230.44 atmosphere 995.0 4320 > th dose independent rect. 7 6
962 230.44 radiation 1.0 90 > th dose independent rect. 7 12
977 230.45 temperature 10.0 270 > th dose independent rect. 14 12
978 230.45 atmosphere 995.0 270 > th dose independent rect. 2 12
979 230.45 atmosphere 1015.0 270 < th dose independent rect. 2 12
980 230.45 humidity 90.0 1440 > th dose independent rect. 4 20
981 230.45 wind 9.0 4320 > th dose dependent rect. 21 1
985 230.46 radiation 40.0 90 < th dose dependent rect. 19 12
990 230.47 radiation 40.0 720 < th dose independent rect. 18 20
995 230.48 atmosphere 995.0 720 > th dose independent rect. 6 20
998 230.48 temperature 15.0 720 > th dose independent rect. 20 23