BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0648500 Os03g0648500|AK107766
(142 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0648500 Cupredoxin domain containing protein 231 1e-61
Os05g0570900 Cupredoxin domain containing protein 73 5e-14
Os04g0545600 Similar to Uclacyanin 3-like protein 73 6e-14
Os08g0482600 Plastocyanin-like domain containing protein 68 2e-12
Os03g0807500 Cupredoxin domain containing protein 67 4e-12
Os08g0137800 Cupredoxin domain containing protein 67 5e-12
Os08g0138200 Cupredoxin domain containing protein 67 6e-12
Os06g0218600 Cupredoxin domain containing protein 66 9e-12
Os09g0469300 Cupredoxin domain containing protein 64 4e-11
>Os03g0648500 Cupredoxin domain containing protein
Length = 142
Score = 231 bits (589), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 116/142 (81%), Positives = 116/142 (81%)
Query: 1 MEGACLRLVVNPQQPTTXXXXXXXXXXXXXXXXXXXXXXXXXXGGSIWSIPPRPGLYRAW 60
MEGACLRLVVNPQQPTT GGSIWSIPPRPGLYRAW
Sbjct: 1 MEGACLRLVVNPQQPTTLLAVFLLLLVAAAVAPPHVLAADHVVGGSIWSIPPRPGLYRAW 60
Query: 61 ADNRTFVAGDNLVFRFETGMYNVVQVGRREFDDCTADDPYRDWTDGPAVVTLGSAAVRYF 120
ADNRTFVAGDNLVFRFETGMYNVVQVGRREFDDCTADDPYRDWTDGPAVVTLGSAAVRYF
Sbjct: 61 ADNRTFVAGDNLVFRFETGMYNVVQVGRREFDDCTADDPYRDWTDGPAVVTLGSAAVRYF 120
Query: 121 ICTVGNYCSLGVKVYVASQNAP 142
ICTVGNYCSLGVKVYVASQNAP
Sbjct: 121 ICTVGNYCSLGVKVYVASQNAP 142
>Os05g0570900 Cupredoxin domain containing protein
Length = 181
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 44 GGSIWSIPPRPGLYRAWADNRTFVAGDNLVFRFETGMYNVVQVGRRE-FDDCTADDPYRD 102
G W + P Y WA R GD L+F + +G+YN+V+V +E FD C+ +
Sbjct: 33 AGKGWRMAPNKTYYADWARTRNISVGDKLMFLYRSGVYNIVEVPTKELFDACSMRNITNR 92
Query: 103 WTDGPAVVTLGSAAVRYFICTVGNYCSLGVKVYV-ASQNAP 142
W +GP ++ L RY+ C VG +C G KV + S +AP
Sbjct: 93 WQNGPTIIELTQPGPRYYFCGVGKHCEEGEKVAINVSVSAP 133
>Os04g0545600 Similar to Uclacyanin 3-like protein
Length = 191
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 57 YRAWADNRTFVAGDNLVFRFETGMYNVVQVGRREFDDCTADDPYRDWTDGPAVVTLGSAA 116
Y AWA +TF GD L+F++ + ++VV+V + C+A +P R + DG +VTL +
Sbjct: 50 YTAWARGKTFNIGDTLLFQYTSAGHSVVEVSEADHTSCSAANPLRSYKDGTTIVTLTRSG 109
Query: 117 VRYFICTVGNYCSLGVKVYV 136
RYFIC +C G+K+ V
Sbjct: 110 TRYFICGSTGHCGAGMKLTV 129
>Os08g0482600 Plastocyanin-like domain containing protein
Length = 172
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 57 YRAWADNRTFVAGDNLVFRFETGMYNVVQVGRREFDDCTAD-DPYRDWTDGPAVVTLG-S 114
Y AWA +TF A D LVFR+ + V +V + ++D CT P D+ G V + S
Sbjct: 43 YTAWAKGKTFEANDTLVFRYARKQHTVTEVTKSDYDACTVSGKPISDFEGGALVTFIALS 102
Query: 115 AAVRYFICTVGNYCSLGVKVYVASQNA 141
YFIC +GN+C+ G+K+ V N+
Sbjct: 103 PGEHYFICKIGNHCASGMKLAVTVSNS 129
>Os03g0807500 Cupredoxin domain containing protein
Length = 209
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%)
Query: 57 YRAWADNRTFVAGDNLVFRFETGMYNVVQVGRREFDDCTADDPYRDWTDGPAVVTLGSAA 116
Y WA +TF GD + F++ G++NVV+V + ++D CT P T G + + +A
Sbjct: 42 YTDWAVKKTFHVGDTIEFKYPQGIHNVVEVKKADYDSCTNSSPIATHTSGDDKIAIKAAG 101
Query: 117 VRYFICTVGNYCSLGVKVYV 136
R+FIC V +C+ G KV +
Sbjct: 102 HRFFICGVPGHCAAGQKVNI 121
>Os08g0137800 Cupredoxin domain containing protein
Length = 190
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%)
Query: 57 YRAWADNRTFVAGDNLVFRFETGMYNVVQVGRREFDDCTADDPYRDWTDGPAVVTLGSAA 116
Y W N F AGD +VF++ ++VV+V + ++D C++ P + G + L +
Sbjct: 42 YDQWVSNINFRAGDQIVFKYSPAAHDVVEVNKADYDSCSSSSPIATFNSGDDTIPLTATG 101
Query: 117 VRYFICTVGNYCSLGVKVYVASQNA 141
RYFIC +C+ G+KV V + A
Sbjct: 102 TRYFICGFNGHCTGGMKVAVKVEAA 126
>Os08g0138200 Cupredoxin domain containing protein
Length = 190
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%)
Query: 57 YRAWADNRTFVAGDNLVFRFETGMYNVVQVGRREFDDCTADDPYRDWTDGPAVVTLGSAA 116
Y WA TF AGD LVFR+ ++VV+V + +D C+A P + G V L +
Sbjct: 45 YAQWASAATFRAGDRLVFRYSPAAHDVVEVTKAGYDACSAASPIATFNSGDDTVPLAAVG 104
Query: 117 VRYFICTVGNYCSLGVKVYV 136
RYFIC +C+ G+K+ V
Sbjct: 105 TRYFICGFPGHCAAGMKLAV 124
>Os06g0218600 Cupredoxin domain containing protein
Length = 198
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 57 YRAWADNRTFVAGDNLVFRFETGMYNVVQVGRREFDDCTADDPYRDWTDGPAVVTLGSAA 116
Y WA ++ F GD LVF + G ++V +V ++ CTA + + + G VTL +A
Sbjct: 39 YTTWASDKKFKMGDTLVFNYAGGAHSVDEVSAADYAACTASNALQSDSSGTTTVTLKTAG 98
Query: 117 VRYFICTVGNYCSLGVKVYV 136
YFIC + +CS G+K+ V
Sbjct: 99 KHYFICGIAGHCSNGMKLVV 118
>Os09g0469300 Cupredoxin domain containing protein
Length = 152
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 57 YRAWADNRTFVAGDNLVFRFETGMYNVVQVGRREFDDCTADDPYRDWTDGPAVVTLGSAA 116
Y WA+ + F GD LVF ++ + V +V + FD C + P + G + L
Sbjct: 39 YNNWANGKFFRQGDELVFNYQARAHTVTEVSQTNFDSCNGNSPLSNDNGGSTTIRLSYPG 98
Query: 117 VRYFICTVGNYCSLGVKVYVASQNAP 142
+ YFICT+ +CS G+K+ V P
Sbjct: 99 MHYFICTIPGHCSSGMKLAVNVNGDP 124
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.139 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,855,880
Number of extensions: 175189
Number of successful extensions: 345
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 14
Length of query: 142
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 51
Effective length of database: 12,284,327
Effective search space: 626500677
Effective search space used: 626500677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)