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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0570900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cupredoxin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.45 (0.0266) R2 : 0.515
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.85 (0.0848) R2dE : 0.509 R2E : 0.513
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0601 (0.0563) R2dN8 : 0.00158 R2N8 : 0.00574
σ : 0.5
deviance : 115.28
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 24.35
memory length : 104
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.31
open length of G : 4.25

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.72 0.457 3.45 -0.458 0.399 1.72 -0.695 -2.24 0.0272 6.78 17.55 89 4.4 4.12
100.93 0.468 3.46 -0.373 0.348 1.72 -1.37 -- 0.0183 6.31 21.5 71 4.59 4.37
95.79 0.456 3.45 -0.439 0.379 1.74 -- -2.32 0.0303 6.96 18.82 87 4.42 4.15
106.54 0.481 3.45 -0.397 0.409 1.66 -- -- 0.0408 7.12 20 89 4.49 4.02
100.5 0.467 3.47 -0.509 -- 1.93 -- -2.5 0.000514 -- 22.46 82 4.4 4.33
157.61 0.589 3.42 -0.35 1.15 -- -1.66 -- 0.104 6.46 -- -- -- --
164.33 0.6 3.41 -0.371 1.14 -- -- -- 0.11 6.62 -- -- -- --
111.29 0.491 3.46 -0.392 -- 1.85 -- -- 0.0173 -- 24.91 103 4.29 4.32
110.69 0.49 3.44 -- 0.397 1.65 -- -- 0.0764 7.08 20.75 89 4.5 4.01
232.01 0.712 3.44 -0.344 -- -- -- -- 0.133 -- -- -- -- --
167.95 0.606 3.4 -- 1.13 -- -- -- 0.151 6.64 -- -- -- --
115.28 0.5 3.45 -- -- 1.85 -- -- 0.0601 -- 24.35 104 4.31 4.25
235.12 0.716 3.43 -- -- -- -- -- 0.171 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 98.84 radiation 20.0 90 < th dose dependent rect. 4 4
4 100.80 humidity 70.0 90 > th dose dependent rect. 4 4
10 102.59 radiation 20.0 90 < th dose independent rect. 4 4
15 103.24 temperature 30.0 90 < th dose dependent rect. 4 3
18 103.63 humidity 80.0 90 > th dose independent rect. 4 4
28 104.53 atmosphere 1010.0 90 < th dose independent rect. 4 3
40 105.38 wind 1.0 270 > th dose independent rect. 2 4
45 105.64 wind 7.0 90 < th dose independent rect. 4 3
47 105.68 temperature 10.0 90 > th dose independent rect. 4 3
49 105.68 temperature 30.0 90 < th dose independent rect. 4 3
50 105.68 humidity 50.0 90 > th dose independent rect. 4 3
52 105.68 atmosphere 995.0 90 > th dose independent rect. 4 3
55 105.68 temperature 10.0 90 > th dose independent rect. 7 21
56 105.71 precipitation 0.1 90 < th dose independent rect. 4 3
57 105.71 precipitation 0.1 90 < th dose dependent rect. 4 3
64 106.03 atmosphere 995.0 90 > th dose independent rect. 7 21
67 106.10 precipitation 0.1 90 < th dose independent rect. 7 21
68 106.10 precipitation 0.1 90 < th dose dependent rect. 7 21
73 106.55 radiation 1.0 270 < th dose independent rect. 2 6
76 106.65 wind 7.0 270 < th dose independent rect. 2 4
95 107.11 temperature 10.0 270 > th dose independent rect. 2 4
97 107.11 temperature 30.0 270 < th dose independent rect. 2 4
98 107.11 humidity 50.0 270 > th dose independent rect. 2 4
101 107.11 atmosphere 995.0 270 > th dose independent rect. 2 4
102 107.11 atmosphere 1015.0 270 < th dose independent rect. 2 4
111 107.33 wind 9.0 90 < th dose independent rect. 7 21
116 107.43 wind 1.0 270 > th dose independent rect. 3 2
120 107.63 precipitation 0.1 270 < th dose independent rect. 2 4
121 107.63 precipitation 0.1 270 < th dose dependent rect. 2 4
125 107.67 humidity 50.0 270 > th dose dependent rect. 2 4
126 107.70 atmosphere 1015.0 90 < th dose dependent rect. 4 3
128 107.72 wind 9.0 90 < th dose dependent rect. 4 3
139 108.09 temperature 30.0 270 < th dose dependent rect. 2 4
157 108.50 radiation 1.0 270 < th dose independent rect. 2 12
193 109.11 wind 9.0 4320 < th dose independent rect. 5 3
198 109.19 temperature 10.0 1440 > th dose independent rect. 5 3
201 109.19 temperature 30.0 1440 < th dose independent rect. 5 3
205 109.19 humidity 50.0 1440 > th dose independent rect. 5 3
210 109.19 atmosphere 995.0 1440 > th dose independent rect. 5 3
211 109.19 atmosphere 1015.0 1440 < th dose independent rect. 5 3
212 109.19 temperature 10.0 1440 > th dose independent rect. 8 21
218 109.28 radiation 1.0 270 < th dose dependent rect. 3 10
252 110.28 humidity 50.0 90 > th dose independent rect. 7 21
298 111.04 temperature 30.0 10 < th dose dependent rect. 5 3
317 111.52 wind 9.0 270 < th dose dependent rect. 2 4
327 111.90 wind 5.0 90 < th dose independent rect. 5 1
357 112.46 precipitation 0.1 90 < th dose independent rect. 5 1
358 112.46 precipitation 0.1 90 < th dose dependent rect. 5 1
363 112.48 temperature 10.0 90 > th dose independent rect. 5 1
365 112.48 temperature 30.0 90 < th dose independent rect. 5 1
366 112.48 humidity 50.0 90 > th dose independent rect. 5 1
369 112.48 atmosphere 995.0 90 > th dose independent rect. 5 1
370 112.48 atmosphere 1010.0 90 < th dose independent rect. 5 1
372 112.48 radiation 20.0 90 < th dose independent rect. 5 1
376 112.48 temperature 10.0 90 > th dose independent rect. 6 23
409 112.75 atmosphere 995.0 90 > th dose dependent rect. 4 3
452 112.89 wind 9.0 90 < th dose dependent rect. 5 1
488 113.14 atmosphere 995.0 270 > th dose dependent rect. 2 4
524 113.45 precipitation 0.1 10 < th dose independent rect. 7 22
526 113.45 precipitation 0.1 10 < th dose dependent rect. 7 22
560 113.69 wind 5.0 10 < th dose independent rect. 5 2
565 113.74 precipitation 0.1 10 < th dose independent rect. 5 2
566 113.74 precipitation 0.1 10 < th dose dependent rect. 5 2
574 113.80 radiation 20.0 90 < th dose dependent rect. 4 11
579 113.84 temperature 10.0 10 > th dose independent rect. 5 2
581 113.84 temperature 30.0 10 < th dose independent rect. 5 2
582 113.84 humidity 50.0 10 > th dose independent rect. 5 2
585 113.84 atmosphere 995.0 10 > th dose independent rect. 5 2
586 113.84 atmosphere 1015.0 10 < th dose independent rect. 5 2
590 113.84 temperature 10.0 10 > th dose independent rect. 7 22
595 113.87 atmosphere 995.0 10 > th dose independent rect. 7 22
598 113.89 radiation 20.0 90 < th dose dependent rect. 4 13
618 114.07 atmosphere 1015.0 90 < th dose independent rect. 7 21
739 114.85 wind 9.0 10 < th dose dependent rect. 5 2
741 114.87 atmosphere 995.0 90 > th dose dependent rect. 5 1
749 115.00 temperature 10.0 90 > th dose dependent rect. 4 3
757 115.10 wind 9.0 10 < th dose independent rect. 7 22
834 115.79 radiation 40.0 270 < th dose dependent rect. 15 15
875 116.19 atmosphere 1015.0 270 < th dose dependent rect. 2 4
880 116.24 radiation 1.0 270 > th dose independent sin 3 NA
936 116.47 temperature 10.0 90 > th dose dependent rect. 5 1
976 116.78 radiation 1.0 270 < th dose independent sin 3 NA
993 116.90 precipitation 0.1 90 < th dose independent rect. 21 7
994 116.90 precipitation 0.1 90 < th dose dependent rect. 21 7