BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0232500 Os05g0232500|AK069430
(467 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0232500 Ubiquitin-conjugating enzyme, E2 domain contai... 818 0.0
Os01g0232500 Ubiquitin-conjugating enzyme, E2 domain contai... 491 e-139
Os05g0557600 Ubiquitin-conjugating enzyme, E2 domain contai... 392 e-109
Os09g0294300 Ubiquitin-conjugating enzyme, E2 domain contai... 339 3e-93
Os01g0233900 Ubiquitin-conjugating enzyme, E2 domain contai... 328 5e-90
Os01g0677500 293 2e-79
Os01g0125900 Ubiquitin-conjugating enzyme, E2 domain contai... 280 2e-75
Os05g0153100 251 1e-66
Os01g0229900 Similar to Shaggy-related protein kinase dzeta... 127 2e-29
Os03g0791800 Rad6 (Ubiquitin carrier protein) 79 7e-15
Os07g0166800 Rad6 (Ubiquitin carrier protein) 77 2e-14
Os05g0182500 Rad6 (Ubiquitin carrier protein) 74 2e-13
>Os05g0232500 Ubiquitin-conjugating enzyme, E2 domain containing protein
Length = 467
Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/459 (88%), Positives = 405/459 (88%)
Query: 1 MDAAGYPKMQGGGXXXXXXXXXXXXXXXXXVWDAVQQQKRQRCQGSSSNDQVGLSTENNS 60
MDAAGYPKMQGGG VWDAVQQQKRQRCQGSSSNDQVGLSTENNS
Sbjct: 1 MDAAGYPKMQGGGASSSSSSSASCRAADAAVWDAVQQQKRQRCQGSSSNDQVGLSTENNS 60
Query: 61 FQAPEPELQNSDCVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNQQLADKFDGLDLPPG 120
FQAPEPELQNSDCV FNQQLADKFDGLDLPPG
Sbjct: 61 FQAPEPELQNSDCVEDEEEDYYLYDEDDVCYDDDGDYEFDETDFNQQLADKFDGLDLPPG 120
Query: 121 VEATVPWLQKKDIADGPSTFKSMAELDADITKKYEFFKQFDVVENFSDHHYADKPVGKTG 180
VEATVPWLQKKDIADGPSTFKSMAELDADITKKYEFFKQFDVVENFSDHHYADKPVGKTG
Sbjct: 121 VEATVPWLQKKDIADGPSTFKSMAELDADITKKYEFFKQFDVVENFSDHHYADKPVGKTG 180
Query: 181 KDWTKRIQYDWKLLEKDLPASIYVRVSENRMDLLRAVIIGPQGTPYHDGLFFFDAQFTST 240
KDWTKRIQYDWKLLEKDLPASIYVRVSENRMDLLRAVIIGPQGTPYHDGLFFFDAQFTST
Sbjct: 181 KDWTKRIQYDWKLLEKDLPASIYVRVSENRMDLLRAVIIGPQGTPYHDGLFFFDAQFTST 240
Query: 241 YPSTPPVVYYHSGGLRLNPNLYACGKVCLSLLGTWSGSGCEKWNSAHSTMLQVLVSIQAL 300
YPSTPPVVYYHSGGLRLNPNLYACGKVCLSLLGTWSGSGCEKWNSAHSTMLQVLVSIQAL
Sbjct: 241 YPSTPPVVYYHSGGLRLNPNLYACGKVCLSLLGTWSGSGCEKWNSAHSTMLQVLVSIQAL 300
Query: 301 VLNENPYFNEPGYETYANSATGQKSAMDYNDTTFQYSCRTMLYSLRRSPQHFDALVAGHF 360
VLNENPYFNEPGYETYANSATGQKSAMDYNDTTFQYSCRTMLYSLRRSPQHFDALVAGHF
Sbjct: 301 VLNENPYFNEPGYETYANSATGQKSAMDYNDTTFQYSCRTMLYSLRRSPQHFDALVAGHF 360
Query: 361 RHRGHAILAACKYYMEGHKVGSVVPNEDEEDAKQQDDTDAXXXXXXXXAKPQPEKPDLCK 420
RHRGHAILAACKYYMEGHKVGSVVPNEDEEDAKQQDDTDA AKPQPEKPDLCK
Sbjct: 361 RHRGHAILAACKYYMEGHKVGSVVPNEDEEDAKQQDDTDAGGSGSSSGAKPQPEKPDLCK 420
Query: 421 GRAASFKTNMAVLFEELLMEFNVKGADTKKFCDEKLKKN 459
GRAASFKTNMAVLFEELLMEFNVKGADTKKFCDEKLKKN
Sbjct: 421 GRAASFKTNMAVLFEELLMEFNVKGADTKKFCDEKLKKN 459
>Os01g0232500 Ubiquitin-conjugating enzyme, E2 domain containing protein
Length = 485
Score = 491 bits (1265), Expect = e-139, Method: Compositional matrix adjust.
Identities = 256/432 (59%), Positives = 295/432 (68%), Gaps = 34/432 (7%)
Query: 47 SSNDQVGLSTENNSFQAPEPE---------------LQNSDCVXXXXXXXXXXXXXXXXX 91
SS+DQVGLST +NS Q EPE L DC+
Sbjct: 45 SSDDQVGLST-SNSLQMSEPEPRDFDNGENEEEDYYLDEDDCIYDDGDGYDYEFDGGDY- 102
Query: 92 XXXXXXXXXXXXFNQQLADKFDGLDLPPGVEATVPWLQKKDIADGPSTFKSMAELDA--D 149
FNQ+LADKFD LDLPPGVEATVPWLQK + S+ K E ++
Sbjct: 103 ------------FNQRLADKFDDLDLPPGVEATVPWLQKIITNEEQSSSKLTVEDESANK 150
Query: 150 ITKKYEFFKQFDVVENFSDHHYADKPVGKTGKDWTKRIQYDWKLLEKDLPASIYVRVSEN 209
K + FKQFD V+NFSDHHYA T +DW KRIQ+DWKLLEKDLPASIYVRV+E+
Sbjct: 151 SANKSQLFKQFDTVKNFSDHHYAATSGDVTKRDWVKRIQHDWKLLEKDLPASIYVRVAED 210
Query: 210 RMDLLRAVIIGPQGTPYHDGLFFFDAQFTSTYPSTPPVVYYHSGGLRLNPNLYACGKVCL 269
RMDLLRA IIGP+GTPYHDGLFFFD QF+++YP+ PP VYYHSGGLR+NPNLY GKVCL
Sbjct: 211 RMDLLRAAIIGPKGTPYHDGLFFFDIQFSNSYPANPPSVYYHSGGLRINPNLYNNGKVCL 270
Query: 270 SLLGTWSGSGCEKWNSAHSTMLQVLVSIQALVLNENPYFNEPGYETYANSATGQKSAMDY 329
SLLGTW+GSGCE WN + STMLQVLVSIQAL+LNE PYFNEPGY +YANS +G++ AM+Y
Sbjct: 271 SLLGTWAGSGCETWNPSQSTMLQVLVSIQALILNEKPYFNEPGYASYANSVSGERIAMEY 330
Query: 330 NDTTFQYSCRTMLYSLRRSPQHFDALVAGHFRHRGHAILAACKYYMEGHKVGSVVPNEDE 389
ND TF +SCRTMLYSLRR P+HF LV HFR RGH ILAAC+YYMEGHKVGSVVP E E
Sbjct: 331 NDNTFLHSCRTMLYSLRRPPEHFADLVTSHFRERGHTILAACRYYMEGHKVGSVVPEEKE 390
Query: 390 EDA--KQQDDTDAXXXXXXXXAKPQPEKPDLCKGRAASFKTNMAVLFEELLMEFNVKGAD 447
+ + A KP+P+K D R +F N+ LFEELLMEFNVKGAD
Sbjct: 391 PEYGDAGASTSSASASAAAAALKPRPDKVDSVS-RRPTFNDNLKTLFEELLMEFNVKGAD 449
Query: 448 TKKFCDEKLKKN 459
T KF EK+KK+
Sbjct: 450 TAKFLAEKVKKS 461
>Os05g0557600 Ubiquitin-conjugating enzyme, E2 domain containing protein
Length = 509
Score = 392 bits (1006), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/351 (56%), Positives = 244/351 (69%), Gaps = 33/351 (9%)
Query: 104 FNQQLADKFDGLDLPPGVEATVPWLQKKDIADGPSTFKSMAELDADITKKYEFFKQFDVV 163
+N LA KFDGLD+PPGVEA +PWLQ A+ + K + +D I +KY FKQFD V
Sbjct: 161 YNFTLASKFDGLDIPPGVEAPLPWLQTT-AAEMANKTKPVNMMDDKIDEKYSAFKQFDTV 219
Query: 164 ENFSDHHYADKP-------VGKTGKDWTKRIQYDWKLLEKDLPASIYVRVSENRMDLLRA 216
++ SDH+Y+ KP V K K+W KRIQ++WK+LEKDLP +I+VR E+RMDLLRA
Sbjct: 220 DDHSDHYYS-KPDLRKVQVVKKPSKEWAKRIQHEWKVLEKDLPDTIFVRAYEDRMDLLRA 278
Query: 217 VIIGPQGTPYHDGLFFFDAQFTSTYPSTPPVVYYHSGGLRLNPNLYACGKVCLSLLGTWS 276
VI GP GTPYHDGLFFFD F YPS PP+V Y SGGLRLNPNLYACGKVCLSLL TWS
Sbjct: 279 VITGPAGTPYHDGLFFFDIYFPPHYPSVPPLVNYRSGGLRLNPNLYACGKVCLSLLNTWS 338
Query: 277 GSGCEKWNSAHSTMLQVLVSIQALVLNENPYFNEPGYETYANSATGQKSAMDYNDTTFQY 336
GSGCE+W+ ++STMLQVLVS+QALVLN PYFNEPGY +AN+ G+KS++ YN+ TF
Sbjct: 339 GSGCERWSPSNSTMLQVLVSVQALVLNAKPYFNEPGYAMHANTPHGEKSSLTYNEDTFLL 398
Query: 337 SCRTMLYSLRRSPQHFDALVAGHFRHRGHAILAACKYYMEGHKVGSVVPNEDEEDAKQQD 396
SCRTMLYSLR P+HF+ +AGHFR G +IL AC+ Y++G +VG +V N +D + D
Sbjct: 399 SCRTMLYSLRNPPKHFEDFIAGHFRKYGQSILIACRAYLDGAQVGCLVGN-GVQDVDEGD 457
Query: 397 DTDAXXXXXXXXAKPQPEKPDLCKGRAASFKTNMAVLFEELLMEFNVKGAD 447
K +A FK+ + LFEELLMEF VKGA+
Sbjct: 458 -----------------------KSCSARFKSALKRLFEELLMEFTVKGAE 485
>Os09g0294300 Ubiquitin-conjugating enzyme, E2 domain containing protein
Length = 433
Score = 339 bits (869), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 177/355 (49%), Positives = 220/355 (61%), Gaps = 32/355 (9%)
Query: 108 LADKFDGLDLPPGVEATVPWLQKKDIADGPSTFKSMAELDADITKKYEFFKQFDVVENFS 167
LA+ G PG +PW P K + +D I +KY+ FKQFD V + S
Sbjct: 90 LAEDVPGPSHQPGTSTVLPW--GCTTPGRPRKHKEIKTVDNKIDEKYKAFKQFDTVTDHS 147
Query: 168 DHHYA-----DKP-VGKTGKDWTKRIQYDWKLLEKDLPASIYVRVSENRMDLLRAVIIGP 221
DH+Y+ + P V K KDW +RIQ++WK+LEKDLP +I+VRV E+RM+LLRAVI+GP
Sbjct: 148 DHYYSMSGKGNVPEVKKPSKDWVRRIQHEWKVLEKDLPGTIFVRVYEDRMELLRAVIVGP 207
Query: 222 QGTPYHDGLFFFDAQFTSTYPSTPPVVYYHSGGLRLNPNLYACGKVCLSLLGTWSGSGCE 281
GTPYHDGLFFFD F S YP PP+V Y SGGLRLNPNLY GKVCLSLL TWSG GCE
Sbjct: 208 AGTPYHDGLFFFDVYFPSQYPKKPPLVNYRSGGLRLNPNLYDSGKVCLSLLNTWSGHGCE 267
Query: 282 KWNSAHSTMLQVLVSIQALVLNENPYFNEPGYETYANSATGQKSAMDYNDTTFQYSCRTM 341
KWN ++STMLQVLVSIQALVLN PYFNEPGY AN+ G+K +M YN++TF SCRTM
Sbjct: 268 KWNPSNSTMLQVLVSIQALVLNAKPYFNEPGYAASANTPQGEKMSMAYNESTFLLSCRTM 327
Query: 342 LYSLRRSPQHFDALVAGHFRHRGHAILAACKYYMEGHKVGSVVPNEDEEDAKQQDDTDAX 401
LYSLR P+HF+ HF G IL CK YM G +VG + N +D + D
Sbjct: 328 LYSLRNPPKHFEDFARVHFCKYGRNILVGCKAYMNGAQVGCLAGN-GVQDVDEGD----- 381
Query: 402 XXXXXXXAKPQPEKPDLCKGRAASFKTNMAVLFEELLMEFNVKGADTKKFCDEKL 456
K +A+FK ++ LF+EL+ EF G +F +++
Sbjct: 382 ------------------KSCSANFKGSLKTLFDELIKEFTRIGVHCHEFQPQRV 418
>Os01g0233900 Ubiquitin-conjugating enzyme, E2 domain containing protein
Length = 374
Score = 328 bits (841), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 150/229 (65%), Positives = 176/229 (76%)
Query: 154 YEFFKQFDVVENFSDHHYADKPVGKTGKDWTKRIQYDWKLLEKDLPASIYVRVSENRMDL 213
Y F QFDVV++FSDH+YA GKT KDW K IQ +WKLL+KDLP SIYVR E+R+DL
Sbjct: 85 YNLFNQFDVVQDFSDHYYAKNSPGKTSKDWVKTIQNEWKLLQKDLPESIYVRAYEDRIDL 144
Query: 214 LRAVIIGPQGTPYHDGLFFFDAQFTSTYPSTPPVVYYHSGGLRLNPNLYACGKVCLSLLG 273
LRA I+GP GTPYHDGLFFFD +F S YP +PP V+YHSGGLRLNPNLY GKVCLSLL
Sbjct: 145 LRAAIVGPAGTPYHDGLFFFDVRFPSEYPQSPPKVHYHSGGLRLNPNLYESGKVCLSLLN 204
Query: 274 TWSGSGCEKWNSAHSTMLQVLVSIQALVLNENPYFNEPGYETYANSATGQKSAMDYNDTT 333
TW G+GCEKW + ST+LQVLVSIQ LVLN+ PYFNEPG + AN+A G+K ++ YN T
Sbjct: 205 TWWGTGCEKWGKSKSTILQVLVSIQGLVLNDKPYFNEPGNKNSANTAPGEKYSLAYNQTA 264
Query: 334 FQYSCRTMLYSLRRSPQHFDALVAGHFRHRGHAILAACKYYMEGHKVGS 382
F SCRTM+YSLR+ P+HF++LVA HF R IL AC Y+ G VGS
Sbjct: 265 FLLSCRTMMYSLRKPPKHFESLVARHFHERERVILDACDAYISGAVVGS 313
>Os01g0677500
Length = 389
Score = 293 bits (751), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 139/223 (62%), Positives = 168/223 (75%), Gaps = 7/223 (3%)
Query: 134 ADGPSTFKSMAELDADITKKYEFFKQFDVVENFSDHHYAD------KPVGKTGKDWTKRI 187
A+ P K M +D I +KY FKQFD+V + SDH Y++ + V + GKDW KRI
Sbjct: 160 AEKPHQHKQMKHVDPKIDEKYVEFKQFDIVGDHSDHFYSNPRERKVQVVNEPGKDWVKRI 219
Query: 188 QYDWKLLEKDLPASIYVRVSENRMDLLRAVIIGPQGTPYHDGLFFFDAQFTSTYPSTPPV 247
Q++WK+LEKDLP +I+VRV E+R++LLRAVIIGP GTPYHDGLFFFD F YP P +
Sbjct: 220 QHEWKVLEKDLPDNIFVRVYEDRLELLRAVIIGPSGTPYHDGLFFFDVYFPPQYPRNPLL 279
Query: 248 VYYHSGGLRLNPNLYACGKVCLSLLGTWSGSGCEKWNSAHSTMLQVLVSIQALVLNENPY 307
V YHSGG+RLNPNLYACGKVCLSLL TW G GCEKWN ++ST LQVLVSIQALVLN PY
Sbjct: 280 VIYHSGGMRLNPNLYACGKVCLSLLNTWPGDGCEKWNPSNST-LQVLVSIQALVLNAKPY 338
Query: 308 FNEPGYETYANSATGQKSAMDYNDTTFQYSCRTMLYSLRRSPQ 350
FNEPG+E+YAN+ +K ++ YN TF SC+TMLYSLR P+
Sbjct: 339 FNEPGFESYANTPRAEKKSIAYNQETFLLSCKTMLYSLRNPPK 381
>Os01g0125900 Ubiquitin-conjugating enzyme, E2 domain containing protein
Length = 1063
Score = 280 bits (715), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 138/275 (50%), Positives = 178/275 (64%), Gaps = 7/275 (2%)
Query: 110 DKFDGLDLPPGVEATVPWLQKKDIADGPSTFKSMAELDADITKKYEFFKQFDVVENFSDH 169
DK +G + E+TV + D + G S MA+ D + FK FDV + DH
Sbjct: 739 DKAEGENNVATSESTV--VTTNDASGGKSVDVDMADKPGD----SDGFKHFDVQQCPPDH 792
Query: 170 HYADKPV-GKTGKDWTKRIQYDWKLLEKDLPASIYVRVSENRMDLLRAVIIGPQGTPYHD 228
HY + G G+ W K++Q +W +LEK+LP IYVRV E+RMDL+RAVIIG GTPY D
Sbjct: 793 HYLENMAQGTGGRKWVKKVQQEWNILEKNLPDYIYVRVFEDRMDLIRAVIIGASGTPYQD 852
Query: 229 GLFFFDAQFTSTYPSTPPVVYYHSGGLRLNPNLYACGKVCLSLLGTWSGSGCEKWNSAHS 288
GLFFFD +P PP YYHSGGLR+NPNLY GKVCLSLL TW+G G E W+ + S
Sbjct: 853 GLFFFDFHLPPEFPQVPPSAYYHSGGLRVNPNLYVDGKVCLSLLNTWTGRGNEVWDPSSS 912
Query: 289 TMLQVLVSIQALVLNENPYFNEPGYETYANSATGQKSAMDYNDTTFQYSCRTMLYSLRRS 348
++LQVLVS+Q LVLNE PYFNE GYE + G+K+A+ YN+ T+ S ++MLY LRR
Sbjct: 913 SILQVLVSLQGLVLNEKPYFNEAGYEKQVGTVEGEKNALPYNENTYLLSLKSMLYILRRP 972
Query: 349 PQHFDALVAGHFRHRGHAILAACKYYMEGHKVGSV 383
P HF+ HF RG IL AC+ Y++G+ VG++
Sbjct: 973 PMHFEDFAKSHFSKRGKYILKACEAYLQGNGVGTL 1007
>Os05g0153100
Length = 1045
Score = 251 bits (640), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 116/225 (51%), Positives = 152/225 (67%), Gaps = 3/225 (1%)
Query: 159 QFDVVENFSDHHYADKPV--GKTGKDWTKRIQYDWKLLEKD-LPASIYVRVSENRMDLLR 215
FDVV+ DHH+ D + G W KR+Q +W++L D LP +IYVR E+RMDLLR
Sbjct: 753 HFDVVQCPPDHHFLDCKLEGAAHGNKWVKRVQKEWQILGNDNLPGTIYVRAFEDRMDLLR 812
Query: 216 AVIIGPQGTPYHDGLFFFDAQFTSTYPSTPPVVYYHSGGLRLNPNLYACGKVCLSLLGTW 275
A ++G G+PYHDGLF FD +TYP+ PP VYYHS GLR+NPNLY G VCLSLL T+
Sbjct: 813 AAMVGAAGSPYHDGLFLFDLHLPATYPAAPPEVYYHSFGLRVNPNLYPSGTVCLSLLNTF 872
Query: 276 SGSGCEKWNSAHSTMLQVLVSIQALVLNENPYFNEPGYETYANSATGQKSAMDYNDTTFQ 335
G G E W+ A ST+LQVLVSIQ LVL +PY+NE GY+ YA + G+++A Y +
Sbjct: 873 DGEGVEVWSPARSTLLQVLVSIQGLVLTADPYYNEAGYDAYAGTPGGRRNAASYAENACL 932
Query: 336 YSCRTMLYSLRRSPQHFDALVAGHFRHRGHAILAACKYYMEGHKV 380
+ R+ L+ LRR P+ F+ +V HFR RG +LAAC+ Y+ G +V
Sbjct: 933 LTLRSALHLLRRPPRGFEGVVGAHFRRRGAHVLAACESYLRGTRV 977
>Os01g0229900 Similar to Shaggy-related protein kinase dzeta (EC 2.7.1.-)
(ASK-dzeta)
Length = 258
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/99 (59%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Query: 157 FKQFDVVENFSDHHYADKPVGKTGKDWTKRIQYDWKLLEKDLPASIYVRVSENRMDLLRA 216
F FDV ++FSDH+YA GKT KDW K IQ +W+LL+KDLP SIYVRV E+R+DLLRA
Sbjct: 136 FSHFDV-QDFSDHYYAKNSPGKTSKDWVKTIQNEWRLLQKDLPESIYVRVYEDRIDLLRA 194
Query: 217 VIIGPQGTPYHDGLFFFDAQFTSTYPSTPPVVYYHSGGL 255
I+GP TPYHDGLFFFD F S YP + + + H L
Sbjct: 195 AIVGPAETPYHDGLFFFDVHFPSEYPQSHRLTHVHIPSL 233
>Os03g0791800 Rad6 (Ubiquitin carrier protein)
Length = 152
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 10/122 (8%)
Query: 185 KRIQYDWKLLEKDLPASIYVRVSENRMDLLRAVIIGPQGTPYHDGLFFFDAQFTSTYPST 244
KR+ D+K L++D PA I +N + L AVI GP TP+ G F QFT YP+
Sbjct: 7 KRLMRDFKRLQQDPPAGISGAPHDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
Query: 245 PPVVYYHSGGLRLNPNLYACGKVCLSLLGTWSGSGCEKWNSAHSTMLQVLVSIQALVLNE 304
PPVV + S +PN+YA G +CL +L +W+ + + +L SIQ+L+ +
Sbjct: 67 PPVVRFVSR--MFHPNIYADGSICLDILQN-------QWSPIYD-VAAILTSIQSLLCDP 116
Query: 305 NP 306
NP
Sbjct: 117 NP 118
>Os07g0166800 Rad6 (Ubiquitin carrier protein)
Length = 152
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 10/122 (8%)
Query: 185 KRIQYDWKLLEKDLPASIYVRVSENRMDLLRAVIIGPQGTPYHDGLFFFDAQFTSTYPST 244
KR+ D+K L++D PA I +N + L AVI GP TP+ G F QFT YP+
Sbjct: 7 KRLMRDFKRLQQDPPAGISGAPHDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
Query: 245 PPVVYYHSGGLRLNPNLYACGKVCLSLLGTWSGSGCEKWNSAHSTMLQVLVSIQALVLNE 304
PP V + S +PN+YA G +CL +L +W+ + + +L SIQ+L+ +
Sbjct: 67 PPTVRFVSR--MFHPNIYADGSICLDILQ-------NQWSPIYD-VAAILTSIQSLLCDP 116
Query: 305 NP 306
NP
Sbjct: 117 NP 118
>Os05g0182500 Rad6 (Ubiquitin carrier protein)
Length = 152
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 12/128 (9%)
Query: 185 KRIQYDWKLLEKDLPASIYVRVSENRMDLLRAVIIGPQGTPYHDGLFFFDAQFTSTYPST 244
KR+ D+K L +D PA I +N + L AVI GP TP+ G F QFT YP+
Sbjct: 7 KRLMRDFKRLMQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
Query: 245 PPVVYYHSGGLRLNPNLYACGKVCLSLLGTWSGSGCEKWNSAHSTMLQVLVSIQALVLNE 304
PP V + S +PN+YA G +CL +L +W+ + + +L SIQ+L+ +
Sbjct: 67 PPTVRFVS--RMFHPNIYADGSICLDILQN-------QWSPIYD-VAAILTSIQSLLCDP 116
Query: 305 NPYFNEPG 312
NP N P
Sbjct: 117 NP--NSPA 122
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,242,052
Number of extensions: 616358
Number of successful extensions: 1519
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 1513
Number of HSP's successfully gapped: 13
Length of query: 467
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 363
Effective length of database: 11,605,545
Effective search space: 4212812835
Effective search space used: 4212812835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)