Os05g0232500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ubiquitin-conjugating enzyme, E2 domain containing protein.
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Os05g0232500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ubiquitin-conjugating enzyme, E2 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.89 | 0.234 | 11.1 | 0.858 | 0.451 | 0.42 | -0.0777 | 1.19 | 0.338 | 19.1 | 69.98 | 3182 | -- | -- |
| 26.42 | 0.239 | 11.1 | 0.956 | 0.445 | 0.445 | -0.181 | -- | 0.393 | 19.3 | 70 | 2734 | -- | -- |
| 24.9 | 0.232 | 11.1 | 0.858 | 0.45 | 0.417 | -- | 1.21 | 0.337 | 19.1 | 70 | 3181 | -- | -- |
| 25.94 | 0.237 | 11.1 | 0.872 | 0.431 | 0.609 | -- | -- | 0.511 | 19 | 73.11 | 8941 | -- | -- |
| 33.6 | 0.27 | 11.1 | 0.715 | -- | 0.536 | -- | 1.27 | 0.4 | -- | 70.71 | 14492 | -- | -- |
| 32.76 | 0.268 | 11.1 | 0.918 | 0.427 | -- | -0.185 | -- | 0.329 | 18.9 | -- | -- | -- | -- |
| 32.81 | 0.268 | 11.1 | 0.921 | 0.426 | -- | -- | -- | 0.328 | 19.2 | -- | -- | -- | -- |
| 35.2 | 0.276 | 11.1 | 0.834 | -- | 0.618 | -- | -- | 0.541 | -- | 74 | 8604 | -- | -- |
| 33.81 | 0.271 | 11.1 | -- | 0.358 | 1.14 | -- | -- | 0.45 | 19.2 | 65.99 | 30217 | -- | -- |
| 42.42 | 0.304 | 11.1 | 0.913 | -- | -- | -- | -- | 0.321 | -- | -- | -- | -- | -- |
| 55.15 | 0.347 | 11.1 | -- | 0.417 | -- | -- | -- | 0.225 | 19.3 | -- | -- | -- | -- |
| 40.7 | 0.297 | 11.1 | -- | -- | 1.05 | -- | -- | 0.308 | -- | 64 | 30168 | -- | -- |
| 64.38 | 0.375 | 11.1 | -- | -- | -- | -- | -- | 0.219 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.24 | humidity | 60 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 2 | 23.32 | humidity | 60 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 5 | 23.55 | humidity | 70 | 14400 | < th | dose dependent | rect. | 16 | 5 |
| 21 | 23.65 | humidity | 70 | 14400 | < th | dose dependent | sin | 13 | NA |
| 24 | 23.68 | humidity | 60 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 54 | 23.74 | humidity | 60 | 14400 | < th | dose independent | rect. | 12 | 8 |
| 92 | 23.84 | humidity | 70 | 14400 | < th | dose independent | sin | 11 | NA |
| 107 | 23.85 | humidity | 60 | 14400 | > th | dose independent | sin | 15 | NA |
| 108 | 23.85 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 112 | 23.87 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 114 | 23.88 | humidity | 60 | 14400 | < th | dose independent | sin | 14 | NA |
| 115 | 23.88 | humidity | 70 | 14400 | < th | dose independent | rect. | 16 | 17 |
| 119 | 23.89 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 155 | 23.94 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 157 | 23.94 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 10 |
| 164 | 23.95 | humidity | 70 | 14400 | > th | dose independent | sin | 11 | NA |
| 165 | 23.95 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 172 | 23.95 | humidity | 70 | 14400 | < th | dose independent | rect. | 16 | 21 |
| 192 | 23.97 | wind | 5 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 195 | 23.98 | humidity | 70 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 205 | 24.01 | humidity | 70 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 217 | 24.02 | humidity | 70 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 379 | 24.10 | humidity | 70 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 485 | 24.18 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 581 | 24.25 | humidity | 50 | 14400 | > th | dose dependent | rect. | 12 | 8 |
| 598 | 24.26 | humidity | 70 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 621 | 24.28 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 627 | 24.28 | humidity | 50 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 633 | 24.28 | humidity | 50 | 14400 | > th | dose dependent | rect. | 10 | 12 |
| 649 | 24.29 | humidity | 50 | 14400 | > th | dose dependent | rect. | 10 | 10 |
| 682 | 24.30 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 758 | 24.32 | humidity | 80 | 14400 | < th | dose dependent | rect. | 15 | 22 |
| 801 | 24.34 | humidity | 70 | 270 | > th | dose independent | rect. | 10 | 15 |
| 812 | 24.34 | humidity | 80 | 14400 | < th | dose dependent | no | NA | NA |
| 827 | 24.35 | humidity | 70 | 14400 | < th | dose independent | no | NA | NA |
| 829 | 24.35 | humidity | 70 | 14400 | < th | dose independent | rect. | 7 | 13 |
| 937 | 24.36 | humidity | 50 | 14400 | > th | dose dependent | sin | 20 | NA |
| 948 | 24.36 | humidity | 60 | 270 | > th | dose dependent | rect. | 9 | 16 |