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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0294300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ubiquitin-conjugating enzyme, E2 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.04 (0.0453) R2 : 0.672
β1 : -2.66 (0.185) R2dD : 0.206 R2D : 0.299
β2 : 2.28 (0.112) R2dC : 0.286 R2C : 0.313
β3 : 3.07 (0.385) R2dE : 0.0665 R2E : 0.173
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.166 (0.0987) R2dN8 : 0.00164 R2N8 : -0.00234
σ : 0.843
deviance : 327.71
__
_____
C
peak time of C : 14.9
E
wheather : temperature
threshold : 15.76
memory length : 4215
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
303.06 0.818 4.79 -2.84 2.25 -3.54 -2.18 -12.8 -0.12 14.8 18.37 4344 -- --
331.79 0.855 5.07 -3.07 2.3 2.6 -2.58 -- -0.236 14.8 18.37 4344 -- --
319.05 0.832 4.8 -2.88 2.25 -3.54 -- -12.9 -0.127 14.9 18.3 4179 -- --
327.71 0.843 5.04 -2.66 2.28 3.07 -- -- -0.166 14.9 15.76 4215 -- --
609.49 1.15 4.82 -2.91 -- -3.16 -- -12.7 -0.16 -- 17.95 4133 -- --
358.21 0.887 5.08 -3.35 2.27 -- -2.44 -- -0.316 14.8 -- -- -- --
378.62 0.911 5.09 -3.41 2.26 -- -- -- -0.33 14.8 -- -- -- --
606.15 1.15 5.06 -2.73 -- 4.36 -- -- -0.159 -- 15.41 3964 -- --
445.43 0.983 4.9 -- 2.26 3.13 -- -- 0.519 14.9 20.17 11974 -- --
674.02 1.21 5.1 -3.51 -- -- -- -- -0.388 -- -- -- -- --
684.97 1.22 5.01 -- 2.33 -- -- -- 0.0498 14.9 -- -- -- --
709.78 1.24 4.9 -- -- 3.63 -- -- 0.518 -- 18.45 34154 -- --
998.21 1.47 5.02 -- -- -- -- -- 0.00102 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 296.10 humidity 60 14400 < th dose dependent rect. 18 15
2 299.34 humidity 50 14400 < th dose dependent rect. 11 2
6 300.65 humidity 50 43200 > th dose independent rect. 22 6
7 300.82 humidity 50 14400 > th dose independent rect. 19 3
25 301.52 humidity 90 720 < th dose independent rect. 9 3
28 302.16 humidity 50 43200 > th dose dependent rect. 4 3
29 302.40 temperature 15 720 > th dose independent rect. 24 21
31 302.82 temperature 25 1440 < th dose dependent rect. 11 1
49 303.04 humidity 50 43200 < th dose dependent sin 8 NA
103 304.32 humidity 90 43200 < th dose dependent rect. 5 1
108 304.49 humidity 50 14400 > th dose independent rect. 19 12
127 304.84 temperature 10 43200 > th dose independent rect. 22 3
135 305.08 atmosphere 1015 720 < th dose independent rect. 24 21
151 305.24 humidity 60 14400 < th dose independent rect. 18 15
178 305.57 temperature 10 43200 > th dose independent rect. 22 1
179 305.57 radiation 20 4320 < th dose independent rect. 3 3
187 305.70 temperature 20 4320 < th dose dependent rect. 2 16
189 305.77 humidity 50 14400 > th dose independent rect. 18 16
205 305.98 atmosphere 1015 14400 > th dose dependent rect. 18 3
208 306.02 humidity 50 43200 > th dose independent rect. 24 4
223 306.30 atmosphere 1015 14400 > th dose independent rect. 14 5
226 306.34 radiation 20 4320 < th dose independent rect. 18 12
233 306.40 humidity 50 43200 < th dose independent sin 8 NA
256 306.57 humidity 50 43200 > th dose independent sin 8 NA
257 306.58 atmosphere 1015 14400 > th dose dependent rect. 13 7
258 306.60 temperature 15 4320 > th dose independent rect. 22 3
261 306.61 humidity 50 43200 < th dose dependent rect. 11 22
272 306.68 temperature 20 4320 < th dose dependent sin 2 NA
275 306.71 radiation 1 1440 < th dose dependent rect. 15 1
279 306.77 atmosphere 1015 720 < th dose independent rect. 24 12
301 306.88 humidity 50 43200 < th dose dependent rect. 3 17
315 306.90 humidity 50 43200 < th dose dependent no NA NA
333 306.91 temperature 15 14400 < th dose dependent rect. 11 6
366 307.01 humidity 50 43200 < th dose dependent rect. 6 23
374 307.05 temperature 15 720 > th dose independent rect. 24 12
411 307.19 humidity 50 43200 < th dose independent rect. 19 17
418 307.25 temperature 15 14400 < th dose dependent rect. 10 9
432 307.34 temperature 15 720 > th dose independent rect. 17 19
436 307.35 humidity 50 43200 < th dose independent rect. 3 9
444 307.36 humidity 50 43200 > th dose independent rect. 22 14
451 307.37 temperature 15 14400 < th dose dependent rect. 10 12
452 307.38 humidity 50 43200 > th dose independent rect. 18 18
459 307.40 humidity 50 43200 > th dose independent rect. 24 12
468 307.43 temperature 15 4320 < th dose dependent sin 23 NA
483 307.48 humidity 60 43200 < th dose independent rect. 23 10
488 307.50 humidity 90 43200 < th dose dependent rect. 1 6
490 307.52 atmosphere 1015 720 < th dose independent rect. 24 5
492 307.54 temperature 15 14400 < th dose dependent rect. 20 2
496 307.56 humidity 50 43200 > th dose independent rect. 3 9
507 307.59 temperature 20 4320 < th dose dependent rect. 12 16
517 307.62 humidity 60 43200 < th dose independent rect. 8 1
518 307.62 temperature 15 720 > th dose independent rect. 9 3
527 307.63 temperature 15 14400 > th dose independent rect. 15 1
536 307.65 temperature 15 4320 > th dose independent rect. 22 1
539 307.65 temperature 20 4320 < th dose dependent rect. 12 18
557 307.71 temperature 20 4320 < th dose dependent rect. 8 22
571 307.77 radiation 20 4320 < th dose independent rect. 1 5
586 307.85 humidity 50 43200 < th dose dependent rect. 11 9
608 307.89 temperature 20 4320 < th dose dependent rect. 12 22
629 307.95 temperature 10 43200 > th dose independent rect. 9 16
665 308.09 temperature 20 4320 < th dose dependent no NA NA
667 308.10 temperature 15 14400 < th dose dependent rect. 12 1
690 308.15 temperature 20 4320 < th dose dependent rect. 5 23
717 308.22 temperature 15 14400 < th dose dependent rect. 16 6
779 308.47 temperature 15 4320 > th dose independent rect. 7 18
780 308.49 temperature 10 43200 < th dose independent rect. 21 1
781 308.49 humidity 50 14400 < th dose independent rect. 11 2
782 308.49 temperature 10 43200 < th dose independent rect. 20 4
787 308.51 temperature 15 14400 < th dose independent rect. 15 1
827 308.56 temperature 15 14400 < th dose dependent rect. 16 1
841 308.61 temperature 10 43200 > th dose independent rect. 13 12
852 308.61 humidity 50 90 > th dose dependent rect. 21 18
858 308.63 temperature 15 4320 > th dose independent rect. 10 15
872 308.69 temperature 10 43200 > th dose independent rect. 15 10
875 308.71 temperature 15 4320 > th dose independent rect. 15 10
880 308.73 temperature 15 4320 > th dose independent rect. 7 5
891 308.77 temperature 15 4320 > th dose independent rect. 13 12
957 308.99 temperature 15 4320 > th dose independent rect. 7 12
959 309.00 temperature 10 43200 > th dose independent rect. 17 8
962 309.02 temperature 15 4320 > th dose independent rect. 10 9
965 309.04 humidity 50 43200 < th dose independent rect. 3 1
968 309.04 temperature 15 4320 > th dose independent rect. 15 4