BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0108800 Os05g0108800|X75670
(137 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0108800 Cytochrome b5 284 1e-77
Os01g0971500 Similar to Cytochrome b5 256 3e-69
Os10g0518200 Similar to Cytochome b5 (Fragment) 177 2e-45
Os02g0649800 Similar to Cytochrome B5 homolog (Fragment) 141 2e-34
Os12g0223300 Similar to Outer membrane cytochrome b(5) (Fra... 120 3e-28
D10954 86 7e-18
Os08g0468700 Similar to Nitrate reductase [NADH] 1 (EC 1.7.... 81 2e-16
Os08g0468100 Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1) 81 2e-16
Os02g0770800 Similar to Nitrate reductase [NAD(P)H] (EC 1.7... 72 1e-13
Os08g0386300 Cytochrome b5 domain containing protein 69 1e-12
Os09g0338500 Similar to Desaturase/cytochrome b5 protein 68 2e-12
Os07g0232200 Similar to Flavohemoprotein b5/b5R variant 63 6e-11
>Os05g0108800 Cytochrome b5
Length = 137
Score = 284 bits (727), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MSNDNKKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDF 60
MSNDNKKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDF
Sbjct: 1 MSNDNKKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDF 60
Query: 61 EDVGHSTTARAMMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQFLVPLA 120
EDVGHSTTARAMMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQFLVPLA
Sbjct: 61 EDVGHSTTARAMMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQFLVPLA 120
Query: 121 ILGLAVAIRIYTKSESA 137
ILGLAVAIRIYTKSESA
Sbjct: 121 ILGLAVAIRIYTKSESA 137
>Os01g0971500 Similar to Cytochrome b5
Length = 135
Score = 256 bits (655), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 120/133 (90%), Positives = 126/133 (94%)
Query: 5 NKKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVG 64
N KV TLEEV+KHN+KDDCWLIIGGKVYNV+KFLEDHPGGDDVLLSST KDATDDFEDVG
Sbjct: 3 NNKVLTLEEVSKHNTKDDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDFEDVG 62
Query: 65 HSTTARAMMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQFLVPLAILGL 124
HSTTARAMMDEYYVGDID +TIP + KY PPKQPHYNQDKTPEFIIKILQFLVPLAILGL
Sbjct: 63 HSTTARAMMDEYYVGDIDATTIPTKVKYTPPKQPHYNQDKTPEFIIKILQFLVPLAILGL 122
Query: 125 AVAIRIYTKSESA 137
AVA+RIYTKSESA
Sbjct: 123 AVAVRIYTKSESA 135
>Os10g0518200 Similar to Cytochome b5 (Fragment)
Length = 134
Score = 177 bits (450), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 82/131 (62%), Positives = 103/131 (78%)
Query: 5 NKKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVG 64
KKV+ EEVA HN DCWLII GKVY+V+ F+++HPGGD+VLL+ TGKDAT+DFED+G
Sbjct: 4 EKKVFGFEEVAGHNVTKDCWLIIAGKVYDVTSFMDEHPGGDEVLLAVTGKDATNDFEDIG 63
Query: 65 HSTTARAMMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQFLVPLAILGL 124
HS +AR MM++Y +G+ID STIP + +V P+Q N DK + +IKILQFLVP+ ILGL
Sbjct: 64 HSESAREMMEKYLIGEIDASTIPVKRTHVTPQQAPGNPDKGDDMLIKILQFLVPILILGL 123
Query: 125 AVAIRIYTKSE 135
A AIR YTKSE
Sbjct: 124 AFAIRQYTKSE 134
>Os02g0649800 Similar to Cytochrome B5 homolog (Fragment)
Length = 138
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 95/135 (70%), Gaps = 2/135 (1%)
Query: 5 NKKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVG 64
K VY+ +EV+KHN + DCWLII GKVY+VS F+E+HPGGD+VLL+ TGKDAT DF D+G
Sbjct: 4 GKAVYSFQEVSKHNDRKDCWLIIAGKVYDVSPFMEEHPGGDEVLLACTGKDATADFNDIG 63
Query: 65 HSTTARAMMDEYYVGDIDTSTIPARTKY-VPPKQPHYNQDKTPE-FIIKILQFLVPLAIL 122
H+ TA+ +M +Y +G++D ST+PA+ Y V + D + + LQ VP+ +L
Sbjct: 64 HTATAKELMPQYCIGEVDASTVPAKPAYRVVSEDASAKPDAASQGAWLTALQLAVPVVLL 123
Query: 123 GLAVAIRIYTKSESA 137
GLA A++ + K+++A
Sbjct: 124 GLAYALQDFAKTKTA 138
>Os12g0223300 Similar to Outer membrane cytochrome b(5) (Fragment)
Length = 150
Score = 120 bits (301), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 84/134 (62%), Gaps = 8/134 (5%)
Query: 6 KKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLL-SSTGKDATDDFEDVG 64
KK+++ +V H S+ DCW++I GKVY+V+KFLEDHPGG+DVLL +S DAT+ FEDVG
Sbjct: 10 KKLFSASDVVGHASRKDCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGDATEAFEDVG 69
Query: 65 HSTTARAMMDEYYVGDIDTSTIPARTKY-------VPPKQPHYNQDKTPEFIIKILQFLV 117
HST+A +MM+ Y +G I P+ ++ VPP Q K P L FL+
Sbjct: 70 HSTSAISMMNNYLIGSIKDYVPPSASEATTIGGNDVPPNFRRMPQKKGPPAPNTFLDFLL 129
Query: 118 PLAILGLAVAIRIY 131
PL +LGLA A Y
Sbjct: 130 PLFVLGLAFAAWYY 143
>D10954
Length = 65
Score = 86.3 bits (212), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 47/58 (81%)
Query: 6 KKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDV 63
KKV+ EEVA HN DCWLII GKVY+ + F+++HPGGD+VLL+ TGKDAT+DF D+
Sbjct: 5 KKVFGFEEVAGHNVXRDCWLIIAGKVYDXTSFMDEHPGGDEVLLAVTGKDATNDFXDI 62
>Os08g0468700 Similar to Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1)
Length = 916
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Query: 1 MSNDNKKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDF 60
M+ + K +T+ EV KH+S+D W+++ G VY+ + FL+DHPGG D +L + G D T++F
Sbjct: 536 MNTTDGKQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEF 595
Query: 61 EDVGHSTTARAMMDEYYVGDIDTS 84
+ + HS A+A++D Y +G++ T+
Sbjct: 596 DAI-HSDKAKALLDTYRIGELITT 618
>Os08g0468100 Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1)
Length = 916
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Query: 1 MSNDNKKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDF 60
M+ + K +T+ EV KH+S+D W+++ G VY+ + FL+DHPGG D +L + G D T++F
Sbjct: 536 MNTTDGKQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEF 595
Query: 61 EDVGHSTTARAMMDEYYVGDIDTS 84
+ + HS A+A++D Y +G++ T+
Sbjct: 596 DAI-HSDKAKALLDTYRIGELITT 618
>Os02g0770800 Similar to Nitrate reductase [NAD(P)H] (EC 1.7.1.2)
Length = 889
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 9 YTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSTT 68
YT+ EV +H + + W+I+ G VY+ + FL+DHPGG D ++ + G D T++F+ + HS
Sbjct: 516 YTMSEVRRHTTPESAWIIVHGHVYDCTGFLKDHPGGADSIMINAGTDCTEEFDAI-HSDK 574
Query: 69 ARAMMDEYYVGDI 81
AR +++ Y +G++
Sbjct: 575 ARGLLEMYRIGEL 587
>Os08g0386300 Cytochrome b5 domain containing protein
Length = 119
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 7 KVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHS 66
+ YT EE++ HN++ DCW+II KVY+V+ ++E+HPGG D +L++ G D+T+ F H
Sbjct: 43 RSYTKEEISAHNTRTDCWVIIKDKVYDVTSYVEEHPGG-DAILNNAGGDSTEGFFGPQHG 101
Query: 67 TTARAMMDEYYVGDIDTS 84
+++++ +G++ S
Sbjct: 102 FRVFEIIEDFCIGELKHS 119
>Os09g0338500 Similar to Desaturase/cytochrome b5 protein
Length = 466
Score = 68.2 bits (165), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 7 KVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHS 66
++ + EE+ H S+DD W+ I G VY+V+ ++ HPGGD LL+ G+DATD F H
Sbjct: 26 RMISSEELRAHASRDDLWISISGDVYDVTAWVPHHPGGDIPLLTLAGQDATDAFAAY-HP 84
Query: 67 TTARAMMDEYYVGDIDTSTI-PARTKY 92
+AR ++ + VG ++ T+ PA +
Sbjct: 85 PSARPLLGRFLVGRLEDYTVSPASADF 111
>Os07g0232200 Similar to Flavohemoprotein b5/b5R variant
Length = 218
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%)
Query: 5 NKKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVG 64
N+++ +LEEV +H + D W ++ G+VYN++ +++ HPGG D+L+ + GKD+T F
Sbjct: 138 NRRLISLEEVKQHKTGDSIWTVLKGRVYNIAPYMKFHPGGVDMLMKAAGKDSTALFNKYH 197
Query: 65 HSTTARAMMDEYYVGDID 82
++++ VG +D
Sbjct: 198 AWVNFEFLLEKCLVGFLD 215
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,021,550
Number of extensions: 213959
Number of successful extensions: 442
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 435
Number of HSP's successfully gapped: 12
Length of query: 137
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 47
Effective length of database: 12,336,541
Effective search space: 579817427
Effective search space used: 579817427
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 150 (62.4 bits)