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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0770800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nitrate reductase [NAD(P)H] (EC 1.7.1.2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.75 (0.0698) R2 : 0.655
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.91 (0.133) R2dE : 0.655 R2E : 0.645
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.466 (0.147) R2dN8 : 0.00984 R2N8 : 0.000416
σ : 1.31
deviance : 792.73
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 3.024
memory length : 81
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.18
open length of G : 11

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
777.51 1.31 4.74 0.51 0.15 3.8 2.73 -1.59 -0.442 13 2.96 77 4.18 11.1
779.52 1.3 4.72 0.553 0.0572 3.9 1.2 -- -0.411 14 2.84 81 4.2 11
784.3 1.3 4.74 0.526 0.0767 3.84 -- 0.408 -0.411 12.2 2.84 81 4.23 11
784.93 1.3 4.74 0.532 0.0982 3.85 -- -- -0.422 9.66 2.85 81 4.23 11
784.41 1.3 4.74 0.538 -- 3.9 -- 0.361 -0.425 -- 2.849 81 4.23 11
1059.24 1.53 4.58 0.399 4.44 -- 0.847 -- -0.172 11.3 -- -- -- --
1062.3 1.53 4.58 0.433 4.43 -- -- -- -0.17 11.2 -- -- -- --
784.83 1.3 4.73 0.549 -- 3.92 -- -- -0.404 -- 3.03 81 4.2 11.1
791.67 1.31 4.74 -- 0.217 3.78 -- -- -0.461 9.26 3.03 81 4.25 11
2290.57 2.24 4.69 0.324 -- -- -- -- -0.21 -- -- -- -- --
1067.23 1.53 4.59 -- 4.43 -- -- -- -0.218 11.2 -- -- -- --
792.73 1.31 4.75 -- -- 3.91 -- -- -0.466 -- 3.024 81 4.18 11
2293.33 2.24 4.7 -- -- -- -- -- -0.246 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 798.00 radiation 10.0 30 < th dose dependent sin 2 NA
13 836.78 radiation 20.0 10 < th dose dependent rect. 3 16
24 844.79 radiation 1.0 90 > th dose independent rect. 4 11
45 851.78 radiation 20.0 10 < th dose dependent rect. 13 21
54 853.31 humidity 70.0 10 > th dose dependent rect. 3 15
55 853.35 radiation 20.0 10 < th dose independent rect. 3 16
66 857.15 atmosphere 1000.0 270 > th dose independent rect. 5 8
79 860.48 atmosphere 1000.0 10 > th dose independent rect. 6 9
81 860.72 humidity 70.0 10 > th dose dependent sin 3 NA
103 864.53 radiation 10.0 90 < th dose dependent rect. 3 7
117 867.11 radiation 20.0 10 < th dose dependent rect. 7 23
122 867.88 precipitation 0.1 270 < th dose independent rect. 5 8
123 867.88 precipitation 0.1 270 < th dose dependent rect. 5 8
130 868.15 temperature 10.0 270 > th dose independent rect. 5 8
132 868.15 atmosphere 1015.0 270 < th dose independent rect. 5 8
133 868.15 temperature 10.0 270 > th dose independent rect. 13 16
146 869.24 wind 9.0 270 < th dose independent rect. 13 16
160 870.77 wind 9.0 270 < th dose independent rect. 5 8
163 870.89 radiation 1.0 90 > th dose independent sin 2 NA
172 871.44 temperature 20.0 270 > th dose independent rect. 1 16
177 871.99 temperature 20.0 270 > th dose independent rect. 24 18
202 874.03 radiation 1.0 90 < th dose independent sin 2 NA
205 874.13 radiation 20.0 30 < th dose independent rect. 12 18
209 874.46 radiation 20.0 10 < th dose dependent rect. 15 23
211 874.73 radiation 30.0 10 < th dose dependent rect. 3 8
226 875.53 radiation 20.0 10 < th dose dependent no NA NA
229 875.65 humidity 80.0 10 > th dose independent rect. 3 15
245 876.66 humidity 50.0 270 > th dose independent rect. 17 8
288 878.09 wind 1.0 270 > th dose independent rect. 17 8
297 878.51 wind 9.0 270 < th dose independent rect. 17 8
300 878.92 temperature 10.0 270 > th dose independent rect. 17 8
301 878.92 radiation 20.0 270 < th dose independent rect. 17 8
305 878.92 atmosphere 1015.0 270 < th dose independent rect. 1 16
306 878.95 radiation 40.0 270 < th dose dependent rect. 17 8
313 879.17 wind 9.0 270 < th dose independent rect. 1 16
335 879.83 atmosphere 995.0 270 > th dose independent rect. 17 8
341 879.96 radiation 40.0 10 < th dose dependent rect. 13 17
348 880.54 humidity 80.0 10 > th dose independent rect. 3 13
369 881.05 radiation 10.0 270 < th dose dependent rect. 23 9
381 881.86 radiation 10.0 30 < th dose independent rect. 3 8
414 882.93 wind 1.0 43200 < th dose independent rect. 21 3
417 883.00 wind 1.0 43200 < th dose independent rect. 18 6
418 883.00 precipitation 0.1 270 < th dose independent rect. 17 8
419 883.00 precipitation 0.1 270 < th dose dependent rect. 17 8
423 883.08 temperature 10.0 270 > th dose dependent rect. 24 17
435 883.61 humidity 50.0 270 > th dose independent rect. 1 15
438 883.68 precipitation 0.1 270 < th dose independent rect. 13 16
439 883.68 precipitation 0.1 270 < th dose dependent rect. 13 16
453 884.04 wind 1.0 43200 > th dose independent rect. 21 2
459 884.38 humidity 80.0 43200 > th dose independent rect. 19 1
462 884.41 temperature 15.0 90 > th dose independent rect. 3 16
487 885.01 wind 1.0 43200 < th dose dependent rect. 18 6
501 885.46 wind 1.0 43200 > th dose independent rect. 18 9
508 885.62 wind 1.0 43200 > th dose independent rect. 18 6
510 885.69 atmosphere 1015.0 270 < th dose independent rect. 13 16
521 886.01 radiation 10.0 10 < th dose independent rect. 7 23
556 887.32 humidity 80.0 43200 > th dose independent rect. 18 3
563 887.63 humidity 70.0 10 > th dose dependent rect. 3 9
568 887.75 humidity 90.0 14400 < th dose dependent rect. 6 1
572 887.91 temperature 30.0 270 < th dose independent rect. 17 7
576 887.97 temperature 10.0 270 > th dose dependent rect. 23 9
577 888.00 wind 1.0 43200 < th dose dependent rect. 20 4
579 888.05 wind 1.0 43200 < th dose dependent rect. 22 2
600 888.63 radiation 20.0 10 < th dose dependent rect. 9 23
613 889.02 precipitation 0.1 270 < th dose independent rect. 1 16
615 889.02 precipitation 0.1 270 < th dose dependent rect. 1 16
618 889.19 humidity 50.0 43200 < th dose independent rect. 16 1
629 889.69 radiation 40.0 90 < th dose independent rect. 13 6
644 890.03 radiation 20.0 10 < th dose dependent rect. 23 23
664 890.65 humidity 90.0 10 < th dose independent rect. 6 9
670 890.73 humidity 50.0 270 > th dose independent rect. 5 8
685 890.78 atmosphere 995.0 270 > th dose independent rect. 1 16
689 890.96 wind 9.0 90 < th dose independent rect. 19 8
694 891.07 temperature 10.0 90 > th dose independent rect. 19 8
696 891.07 humidity 50.0 90 > th dose independent rect. 19 8
698 891.07 atmosphere 995.0 90 > th dose independent rect. 19 8
699 891.07 radiation 1.0 90 < th dose independent rect. 19 8
705 891.07 atmosphere 1015.0 90 < th dose independent rect. 3 16
711 891.11 wind 1.0 43200 > th dose independent rect. 21 6
723 891.34 wind 1.0 270 > th dose independent rect. 1 16
738 891.73 radiation 10.0 10 > th dose independent rect. 9 23
748 891.81 humidity 60.0 14400 > th dose dependent rect. 4 3
785 892.41 wind 1.0 43200 < th dose independent rect. 18 9
801 892.59 wind 9.0 90 < th dose independent rect. 3 16
814 892.83 humidity 80.0 43200 < th dose independent rect. 18 2
816 892.88 wind 1.0 270 > th dose independent rect. 12 6
821 892.92 precipitation 0.1 270 < th dose independent rect. 18 18
822 892.92 precipitation 0.1 270 < th dose dependent rect. 18 18
835 893.22 radiation 10.0 10 > th dose independent sin 2 NA
847 893.47 atmosphere 995.0 270 > th dose dependent rect. 5 8
864 893.73 atmosphere 995.0 270 > th dose independent rect. 18 18
879 893.99 precipitation 0.1 270 < th dose independent rect. 17 20
880 893.99 precipitation 0.1 270 < th dose dependent rect. 17 20
890 894.18 radiation 1.0 270 < th dose independent rect. 24 16
891 894.19 wind 9.0 270 < th dose independent rect. 12 6
893 894.20 temperature 10.0 270 > th dose independent rect. 12 6
895 894.20 atmosphere 1015.0 270 < th dose independent rect. 12 6
896 894.20 temperature 10.0 270 > th dose independent rect. 18 18
901 894.26 humidity 80.0 10 > th dose independent rect. 3 11
915 894.63 humidity 80.0 43200 > th dose independent rect. 17 5
921 894.74 wind 1.0 270 > th dose independent rect. 13 4
946 895.15 wind 9.0 270 < th dose independent rect. 18 18
948 895.17 precipitation 0.1 90 < th dose independent rect. 19 8
949 895.17 precipitation 0.1 90 < th dose dependent rect. 19 8
955 895.28 radiation 20.0 10 < th dose dependent rect. 21 23
985 895.76 atmosphere 995.0 270 > th dose independent rect. 17 20