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Os08g0468100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.3 (0.0443) R2 : 0.804
β1 : -1.13 (0.161) R2dD : 0.0224 R2D : 0.0159
β2 : 3 (0.245) R2dC : 0.323 R2C : 0.665
β3 : -1.64 (0.225) R2dE : 0.119 R2E : 0.46
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.255 (0.0935) R2dN8 : 0.00449 R2N8 : -0.00263
σ : 0.819
deviance : 309.1
__
_____
C
peak time of C : 8.67
E
wheather : radiation
threshold : 10.44
memory length : 9
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 11.4
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
293.71 0.805 13.3 -1.29 3.02 -1.68 4.17 2.97 -0.258 8.9 10.17 10 11.8 --
305.44 0.82 13.3 -1.19 3.09 -1.59 1.52 -- -0.25 8.86 10.78 12 11.8 --
315.75 0.834 13.3 -1.13 3.15 -1.53 -- -0.523 -0.25 8.83 10.17 10 11.8 --
309.1 0.819 13.3 -1.13 3 -1.64 -- -- -0.255 8.67 10.44 9 11.4 --
337.26 0.855 13.4 -0.983 -- -4.3 -- -1.04 -0.312 -- 45.14 190 11.2 --
343.72 0.869 13.3 -1.1 4.6 -- 1.58 -- -0.244 8.64 -- -- -- --
351.84 0.878 13.3 -1.05 4.6 -- -- -- -0.245 8.61 -- -- -- --
339.72 0.858 13.4 -0.973 -- -4.55 -- -- -0.324 -- 47.28 209 11.4 --
342.49 0.862 13.3 -- 2.98 -1.67 -- -- -0.125 8.68 10.44 9 11.2 --
1544.06 1.84 13.4 -1.04 -- -- -- -- -0.204 -- -- -- -- --
380.99 0.913 13.2 -- 4.6 -- -- -- -0.127 8.63 -- -- -- --
365.99 0.891 13.4 -- -- -4.5 -- -- -0.218 -- 48.05 214 11.4 --
1572.45 1.85 13.4 -- -- -- -- -- -0.0886 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 290.61 temperature 20.0 90 > th dose independent rect. 16 10
3 292.20 temperature 20.0 270 > th dose independent rect. 14 10
6 293.11 temperature 30.0 270 < th dose dependent rect. 19 10
13 294.83 radiation 20.0 10 < th dose dependent sin 18 NA
19 295.94 humidity 80.0 90 < th dose independent rect. 11 5
24 297.27 precipitation 0.1 270 < th dose independent rect. 1 13
25 297.27 precipitation 0.1 270 < th dose dependent rect. 1 13
26 297.29 temperature 20.0 90 > th dose independent rect. 16 19
28 297.66 humidity 80.0 270 < th dose independent rect. 11 2
31 298.29 temperature 30.0 10 < th dose dependent rect. 22 9
41 299.30 humidity 90.0 90 < th dose dependent rect. 11 5
46 299.97 radiation 1.0 270 < th dose dependent rect. 18 11
47 300.10 temperature 15.0 30 > th dose dependent rect. 16 11
55 300.55 atmosphere 1015.0 270 < th dose independent rect. 14 11
61 300.95 humidity 80.0 10 < th dose independent rect. 12 4
67 301.18 humidity 70.0 270 > th dose independent rect. 18 11
71 301.33 humidity 90.0 270 < th dose dependent rect. 11 2
80 301.59 temperature 20.0 90 < th dose independent rect. 22 6
93 302.11 radiation 20.0 10 < th dose dependent rect. 7 15
96 302.26 wind 5.0 270 < th dose independent rect. 10 19
99 302.37 radiation 40.0 10 < th dose dependent sin 15 NA
101 302.39 radiation 20.0 10 < th dose dependent rect. 7 20
103 302.50 temperature 20.0 270 < th dose independent rect. 22 3
106 302.54 radiation 10.0 10 < th dose independent sin 18 NA
117 302.78 precipitation 0.1 270 < th dose independent rect. 19 10
118 302.78 precipitation 0.1 270 < th dose dependent rect. 19 10
119 302.79 humidity 90.0 10 < th dose dependent rect. 12 4
120 302.86 wind 7.0 270 < th dose independent rect. 19 10
123 302.97 radiation 10.0 10 > th dose independent sin 16 NA
132 303.23 wind 1.0 270 > th dose independent rect. 14 10
140 303.38 radiation 10.0 90 > th dose independent rect. 11 5
142 303.40 radiation 1.0 270 < th dose independent rect. 19 10
155 303.55 temperature 10.0 270 > th dose independent rect. 19 10
156 303.55 temperature 30.0 270 < th dose independent rect. 19 10
157 303.55 humidity 50.0 270 > th dose independent rect. 19 10
158 303.55 atmosphere 995.0 270 > th dose independent rect. 19 10
162 303.55 temperature 10.0 270 > th dose independent rect. 5 14
163 303.55 atmosphere 1015.0 270 < th dose independent rect. 5 14
169 303.60 temperature 20.0 10 < th dose independent rect. 23 5
171 303.60 wind 9.0 270 < th dose dependent rect. 10 11
176 303.69 wind 9.0 270 < th dose independent rect. 5 14
184 303.78 wind 9.0 90 < th dose dependent rect. 11 20
199 304.23 wind 9.0 270 < th dose dependent rect. 9 20
206 304.33 humidity 50.0 720 > th dose independent rect. 6 11
226 304.61 temperature 10.0 270 > th dose dependent rect. 16 17
228 304.64 precipitation 0.1 270 < th dose independent rect. 5 14
229 304.64 precipitation 0.1 270 < th dose dependent rect. 5 14
231 304.69 temperature 20.0 270 < th dose independent rect. 23 1
242 304.91 precipitation 0.1 10 < th dose independent rect. 3 13
243 304.91 precipitation 0.1 10 < th dose dependent rect. 3 13
257 305.07 temperature 25.0 270 < th dose dependent rect. 22 3
267 305.21 temperature 10.0 270 > th dose independent rect. 1 13
268 305.21 atmosphere 995.0 270 > th dose independent rect. 1 13
269 305.21 atmosphere 1015.0 270 < th dose independent rect. 1 13
275 305.26 precipitation 0.1 270 < th dose independent rect. 14 11
277 305.26 precipitation 0.1 270 < th dose dependent rect. 14 11
281 305.30 radiation 10.0 10 > th dose independent rect. 12 19
283 305.31 radiation 1.0 270 < th dose dependent sin 11 NA
284 305.33 radiation 20.0 30 < th dose independent sin 15 NA
290 305.45 radiation 10.0 10 > th dose independent rect. 12 6
317 305.59 atmosphere 1015.0 10 < th dose independent rect. 16 11
326 305.79 radiation 10.0 10 < th dose independent rect. 8 14
341 305.93 wind 5.0 10 < th dose independent rect. 12 19
345 305.98 temperature 30.0 90 < th dose dependent sin 11 NA
356 306.19 atmosphere 995.0 270 > th dose independent rect. 5 14
358 306.21 atmosphere 1015.0 90 < th dose independent rect. 16 19
397 306.61 temperature 15.0 90 > th dose dependent rect. 16 19
401 306.72 wind 9.0 270 < th dose independent rect. 1 13
406 306.84 wind 9.0 270 < th dose independent rect. 14 11
411 306.87 radiation 40.0 270 < th dose independent rect. 14 11
428 306.97 humidity 50.0 720 > th dose independent rect. 6 19
446 307.12 humidity 50.0 14400 > th dose dependent rect. 4 2
459 307.30 temperature 25.0 270 < th dose dependent rect. 23 1
462 307.31 temperature 10.0 90 > th dose dependent rect. 11 5
473 307.39 temperature 20.0 90 > th dose independent rect. 6 21
487 307.50 temperature 20.0 90 < th dose independent sin 12 NA
491 307.53 temperature 15.0 270 > th dose independent rect. 13 22
500 307.56 radiation 20.0 10 < th dose dependent rect. 12 10
505 307.62 radiation 10.0 270 > th dose independent rect. 11 2
507 307.63 humidity 50.0 720 > th dose independent rect. 5 13
519 307.73 humidity 50.0 720 > th dose independent rect. 22 19
531 307.82 wind 9.0 10 < th dose dependent rect. 12 19
540 307.91 temperature 20.0 10 < th dose independent rect. 20 9
544 307.94 atmosphere 995.0 10 > th dose dependent rect. 22 9
548 307.95 radiation 10.0 10 < th dose independent rect. 7 20
562 308.00 temperature 10.0 90 > th dose dependent rect. 23 12
566 308.03 radiation 1.0 270 < th dose independent sin 11 NA
568 308.04 humidity 50.0 14400 > th dose dependent rect. 2 5
586 308.21 atmosphere 1015.0 270 < th dose independent rect. 16 17
609 308.34 temperature 25.0 30 > th dose dependent rect. 12 4
611 308.35 wind 3.0 720 > th dose independent rect. 15 2
625 308.47 radiation 10.0 10 < th dose independent rect. 13 9
633 308.52 temperature 20.0 10 < th dose independent sin 11 NA
634 308.52 radiation 10.0 10 < th dose independent rect. 22 9
659 308.66 wind 1.0 720 > th dose dependent rect. 15 2
694 308.82 wind 1.0 270 > th dose independent rect. 5 14
712 308.92 temperature 10.0 30 > th dose dependent rect. 16 6
720 308.95 atmosphere 995.0 10 > th dose independent rect. 7 15
721 308.95 atmosphere 995.0 270 > th dose dependent rect. 19 10
738 309.02 humidity 50.0 30 > th dose independent rect. 7 15
751 309.07 humidity 90.0 14400 < th dose dependent rect. 5 1
776 309.22 radiation 10.0 10 < th dose independent rect. 16 11
780 309.26 humidity 50.0 90 > th dose independent rect. 16 19
781 309.26 atmosphere 1015.0 270 < th dose independent rect. 13 22
785 309.29 wind 1.0 10 > th dose dependent rect. 16 19
789 309.31 humidity 70.0 10 > th dose independent rect. 7 15
791 309.32 temperature 20.0 90 > th dose independent rect. 21 14
793 309.33 humidity 50.0 720 > th dose independent rect. 13 4
801 309.37 temperature 20.0 720 > th dose independent rect. 13 5
806 309.39 precipitation 0.1 720 < th dose independent rect. 3 10
807 309.39 precipitation 0.1 720 < th dose dependent rect. 3 10
809 309.40 humidity 50.0 10 > th dose independent rect. 16 11
815 309.43 radiation 1.0 270 > th dose independent rect. 9 7
820 309.45 temperature 20.0 10 < th dose dependent sin 10 NA
822 309.47 precipitation 0.1 10 < th dose independent rect. 22 9
824 309.47 precipitation 0.1 10 < th dose dependent rect. 22 9
832 309.52 temperature 30.0 10 < th dose independent rect. 7 15
886 309.71 radiation 10.0 10 < th dose independent rect. 14 13
894 309.75 radiation 40.0 10 < th dose dependent rect. 16 11
897 309.78 temperature 25.0 10 > th dose independent rect. 12 4
902 309.79 atmosphere 995.0 90 > th dose independent rect. 16 19
911 309.86 atmosphere 995.0 10 > th dose independent rect. 16 11
937 309.97 temperature 20.0 10 > th dose independent rect. 23 12
938 309.98 humidity 50.0 720 > th dose independent rect. 13 21
954 310.06 temperature 20.0 10 < th dose dependent rect. 12 17
982 310.20 humidity 90.0 14400 < th dose dependent rect. 2 5
987 310.22 temperature 20.0 10 < th dose dependent rect. 15 14