Os12g0223300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Outer membrane cytochrome b(5) (Fragment).
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Os12g0223300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Outer membrane cytochrome b(5) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.03 | 0.225 | 13.4 | -0.638 | 0.078 | -0.499 | 0.431 | 1 | -0.259 | 10.3 | 0.384 | 1448 | -- | -- |
| 23.57 | 0.226 | 13.4 | -0.582 | 0.0554 | -0.764 | 0.483 | -- | -0.267 | 9.11 | 0.2581 | 1456 | -- | -- |
| 23.66 | 0.227 | 13.4 | -0.615 | 0.0881 | -0.46 | -- | 1.11 | -0.254 | 11.1 | 0.4293 | 1409 | -- | -- |
| 24.17 | 0.229 | 13.4 | -0.543 | 0.0558 | -0.777 | -- | -- | -0.269 | 10.3 | 0.2972 | 1460 | -- | -- |
| 24.06 | 0.228 | 13.4 | -0.637 | -- | -0.507 | -- | 0.981 | -0.254 | -- | 0.007168 | 1462 | -- | -- |
| 29.42 | 0.254 | 13.4 | -0.348 | 0.0932 | -- | 0.361 | -- | -0.156 | 10.3 | -- | -- | -- | -- |
| 29.94 | 0.256 | 13.4 | -0.334 | 0.0912 | -- | -- | -- | -0.155 | 10.7 | -- | -- | -- | -- |
| 24.19 | 0.229 | 13.4 | -0.509 | -- | -0.733 | -- | -- | -0.227 | -- | 0.2992 | 1473 | -- | -- |
| 30.43 | 0.257 | 13.4 | -- | 0.0256 | -0.485 | -- | -- | -0.158 | 8.36 | 0.482 | 1517 | -- | -- |
| 30.45 | 0.258 | 13.4 | -0.335 | -- | -- | -- | -- | -0.155 | -- | -- | -- | -- | -- |
| 32.87 | 0.268 | 13.3 | -- | 0.0938 | -- | -- | -- | -0.118 | 10.9 | -- | -- | -- | -- |
| 30.4 | 0.257 | 13.4 | -- | -- | -0.497 | -- | -- | -0.159 | -- | 0.46 | 1534 | -- | -- |
| 33.42 | 0.27 | 13.3 | -- | -- | -- | -- | -- | -0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.40 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 8 | 11 |
| 2 | 22.43 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 15 | 4 |
| 5 | 22.52 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 8 | 22.58 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 19 | 22.63 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 22 | 22.65 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 9 |
| 34 | 22.68 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 36 | 22.69 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 38 | 22.73 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 19 | NA |
| 45 | 22.75 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 16 |
| 72 | 22.81 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 73 | 22.81 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 11 |
| 116 | 22.84 | radiation | 1.0 | 720 | < th | dose independent | rect. | 14 | 5 |
| 208 | 23.04 | radiation | 1.0 | 1440 | < th | dose independent | sin | 19 | NA |
| 233 | 23.07 | radiation | 1.0 | 1440 | > th | dose independent | sin | 19 | NA |
| 280 | 23.11 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 296 | 23.13 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 410 | 23.35 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 4 | 18 |
| 411 | 23.35 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 2 | 20 |
| 412 | 23.35 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 4 | 20 |
| 415 | 23.35 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 2 | 22 |
| 417 | 23.36 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 462 | 23.37 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 525 | 23.49 | radiation | 1.0 | 720 | < th | dose independent | rect. | 5 | 14 |
| 647 | 23.84 | radiation | 1.0 | 720 | < th | dose independent | rect. | 1 | 18 |
| 689 | 23.92 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 691 | 23.92 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 695 | 23.93 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 8 | 16 |
| 702 | 23.95 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 704 | 23.95 | radiation | 1.0 | 720 | < th | dose independent | rect. | 22 | 21 |
| 730 | 24.00 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 743 | 24.02 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 13 | 18 |
| 752 | 24.06 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 774 | 24.08 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 13 | 16 |
| 779 | 24.09 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 792 | 24.09 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 2 | 6 |
| 816 | 24.14 | radiation | 1.0 | 720 | < th | dose independent | rect. | 3 | 16 |
| 819 | 24.15 | wind | 1.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 835 | 24.17 | wind | 7.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 862 | 24.20 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 864 | 24.20 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 865 | 24.20 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 2 | 6 |
| 883 | 24.22 | wind | 7.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 887 | 24.22 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 926 | 24.25 | humidity | 90.0 | 720 | > th | dose dependent | sin | 19 | NA |
| 950 | 24.28 | wind | 1.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 981 | 24.29 | radiation | 1.0 | 1440 | < th | dose independent | no | NA | NA |