BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0223300 Os12g0223300|AK060133
(150 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0223300 Similar to Outer membrane cytochrome b(5) (Fra... 270 3e-73
Os05g0108800 Cytochrome b5 102 1e-22
Os01g0971500 Similar to Cytochrome b5 100 3e-22
Os10g0518200 Similar to Cytochome b5 (Fragment) 97 3e-21
Os02g0649800 Similar to Cytochrome B5 homolog (Fragment) 87 5e-18
Os08g0468100 Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1) 71 4e-13
Os08g0468700 Similar to Nitrate reductase [NADH] 1 (EC 1.7.... 70 4e-13
Os09g0338500 Similar to Desaturase/cytochrome b5 protein 69 1e-12
Os08g0386300 Cytochrome b5 domain containing protein 69 2e-12
D10954 68 2e-12
Os02g0770800 Similar to Nitrate reductase [NAD(P)H] (EC 1.7... 67 4e-12
>Os12g0223300 Similar to Outer membrane cytochrome b(5) (Fragment)
Length = 150
Score = 270 bits (690), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 133/150 (88%), Positives = 133/150 (88%)
Query: 1 MAEDEAASAKKLFSASDVVGHASRKDCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGD 60
MAEDEAASAKKLFSASDVVGHASRKDCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGD
Sbjct: 1 MAEDEAASAKKLFSASDVVGHASRKDCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGD 60
Query: 61 ATEAFEDVGHSTSAISMMNNYLIGSIKDYVPPSASEATTIGGNDVPPNFRRMPQKKGPPA 120
ATEAFEDVGHSTSAISMMNNYLIGSIKDYVPPSASEATTIGGNDVPPNFRRMPQKKGPPA
Sbjct: 61 ATEAFEDVGHSTSAISMMNNYLIGSIKDYVPPSASEATTIGGNDVPPNFRRMPQKKGPPA 120
Query: 121 PNTXXXXXXXXXXXXXXXXXWYYLTFIAKA 150
PNT WYYLTFIAKA
Sbjct: 121 PNTFLDFLLPLFVLGLAFAAWYYLTFIAKA 150
>Os05g0108800 Cytochrome b5
Length = 137
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 71/109 (65%), Gaps = 8/109 (7%)
Query: 10 KKLFSASDVVGHASRKDCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGDATEAFEDVG 69
KK+++ +V H S+ DCW++I GKVY+V+KFLEDHPGG+DVLL +S DAT+ FEDVG
Sbjct: 6 KKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLL-SSTGKDATDDFEDVG 64
Query: 70 HSTSAISMMNNYLIGSIKDYVPPSASEATTIGGNDVPPNFRRMPQKKGP 118
HST+A +MM+ Y +G I P+ ++ VPP Q K P
Sbjct: 65 HSTTARAMMDEYYVGDIDTSTIPARTKY-------VPPKQPHYNQDKTP 106
>Os01g0971500 Similar to Cytochrome b5
Length = 135
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 70/111 (63%), Gaps = 8/111 (7%)
Query: 8 SAKKLFSASDVVGHASRKDCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGDATEAFED 67
S K+ + +V H ++ DCW++I GKVY+VTKFLEDHPGG+DVLL ++A DAT+ FED
Sbjct: 2 SNNKVLTLEEVSKHNTKDDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAK-DATDDFED 60
Query: 68 VGHSTSAISMMNNYLIGSIKDYVPPSASEATTIGGNDVPPNFRRMPQKKGP 118
VGHST+A +MM+ Y +G I P+ + T PP Q K P
Sbjct: 61 VGHSTTARAMMDEYYVGDIDATTIPTKVKYT-------PPKQPHYNQDKTP 104
>Os10g0518200 Similar to Cytochome b5 (Fragment)
Length = 134
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 7 ASAKKLFSASDVVGHASRKDCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGDATEAFE 66
A KK+F +V GH KDCW++I GKVYDVT F+++HPGG++VLL A DAT FE
Sbjct: 2 AGEKKVFGFEEVAGHNVTKDCWLIIAGKVYDVTSFMDEHPGGDEVLL-AVTGKDATNDFE 60
Query: 67 DVGHSTSAISMMNNYLIGSI 86
D+GHS SA MM YLIG I
Sbjct: 61 DIGHSESAREMMEKYLIGEI 80
>Os02g0649800 Similar to Cytochrome B5 homolog (Fragment)
Length = 138
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 7 ASAKKLFSASDVVGHASRKDCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGDATEAFE 66
A K ++S +V H RKDCW++I GKVYDV+ F+E+HPGG++VLL A DAT F
Sbjct: 2 AGGKAVYSFQEVSKHNDRKDCWLIIAGKVYDVSPFMEEHPGGDEVLL-ACTGKDATADFN 60
Query: 67 DVGHSTSAISMMNNYLIGSIKDYVPPS 93
D+GH+ +A +M Y IG + P+
Sbjct: 61 DIGHTATAKELMPQYCIGEVDASTVPA 87
>Os08g0468100 Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1)
Length = 916
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 11 KLFSASDVVGHASRKDCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGDATEAFEDVGH 70
K F+ S+V H+S+ W+V+HG VYD T FL+DHPGG D +L +A D TE F+ + H
Sbjct: 542 KQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSIL-INAGTDCTEEFDAI-H 599
Query: 71 STSAISMMNNYLIGSI 86
S A ++++ Y IG +
Sbjct: 600 SDKAKALLDTYRIGEL 615
>Os08g0468700 Similar to Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1)
Length = 916
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 11 KLFSASDVVGHASRKDCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGDATEAFEDVGH 70
K F+ S+V H+S+ W+V+HG VYD T FL+DHPGG D +L +A D TE F+ + H
Sbjct: 542 KQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSIL-INAGTDCTEEFDAI-H 599
Query: 71 STSAISMMNNYLIGSI 86
S A ++++ Y IG +
Sbjct: 600 SDKAKALLDTYRIGEL 615
>Os09g0338500 Similar to Desaturase/cytochrome b5 protein
Length = 466
Score = 69.3 bits (168), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
Query: 2 AEDEAASAKKLFSASDVVGHASRKDCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGDA 61
A+ A + ++ S+ ++ HASR D W+ I G VYDVT ++ HPGG D+ L A DA
Sbjct: 17 AQSRAGAGVRMISSEELRAHASRDDLWISISGDVYDVTAWVPHHPGG-DIPLLTLAGQDA 75
Query: 62 TEAFEDVGHSTSAISMMNNYLIGSIKDYVPPSAS 95
T+AF H SA ++ +L+G ++DY AS
Sbjct: 76 TDAFAAY-HPPSARPLLGRFLVGRLEDYTVSPAS 108
>Os08g0386300 Cytochrome b5 domain containing protein
Length = 119
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 6/90 (6%)
Query: 2 AEDEAASAKKL----FSASDVVGHASRKDCWVVIHGKVYDVTKFLEDHPGGEDVLLHASA 57
A++ +++AK + ++ ++ H +R DCWV+I KVYDVT ++E+HPGG+ +L +A
Sbjct: 30 AKEASSNAKSVTFRSYTKEEISAHNTRTDCWVIIKDKVYDVTSYVEEHPGGDAIL--NNA 87
Query: 58 SGDATEAFEDVGHSTSAISMMNNYLIGSIK 87
GD+TE F H ++ ++ IG +K
Sbjct: 88 GGDSTEGFFGPQHGFRVFEIIEDFCIGELK 117
>D10954
Length = 65
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 7 ASAKKLFSASDVVGHASRKDCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGDATEAFE 66
A KK+F +V GH +DCW++I GKVYD T F+++HPGG++VLL A DAT F
Sbjct: 2 AGEKKVFGFEEVAGHNVXRDCWLIIAGKVYDXTSFMDEHPGGDEVLL-AVTGKDATNDFX 60
Query: 67 DV 68
D+
Sbjct: 61 DI 62
>Os02g0770800 Similar to Nitrate reductase [NAD(P)H] (EC 1.7.1.2)
Length = 889
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 8 SAKKLFSASDVVGHASRKDCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGDATEAFED 67
+A ++ S+V H + + W+++HG VYD T FL+DHPGG D ++ +A D TE F+
Sbjct: 511 TATTQYTMSEVRRHTTPESAWIIVHGHVYDCTGFLKDHPGGADSIM-INAGTDCTEEFDA 569
Query: 68 VGHSTSAISMMNNYLIGSI----KDYVPPSASEATT 99
+ HS A ++ Y IG + DY P S+S T
Sbjct: 570 I-HSDKARGLLEMYRIGELIVTGSDYSPQSSSADLT 604
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.130 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,201,652
Number of extensions: 205359
Number of successful extensions: 570
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 563
Number of HSP's successfully gapped: 11
Length of query: 150
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 58
Effective length of database: 12,232,113
Effective search space: 709462554
Effective search space used: 709462554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 151 (62.8 bits)